Wall clock time and date at job start Tue Mar 31 2020 02:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47431 * 2 1 4 4 C 1.50700 * 109.47092 * 239.99574 * 2 1 3 5 5 H 1.08002 * 119.99770 * 239.99893 * 4 2 1 6 6 C 1.37876 * 119.99720 * 60.00211 * 4 2 1 7 7 N 1.31514 * 120.00513 * 0.02562 * 6 4 2 8 8 Si 1.86809 * 119.99651 * 179.97438 * 6 4 2 9 9 H 1.48491 * 109.47115 * 89.99974 * 8 6 4 10 10 H 1.48509 * 109.46780 * 210.00159 * 8 6 4 11 11 H 1.48497 * 109.46888 * 329.99916 * 8 6 4 12 12 C 1.53004 * 109.46876 * 119.99637 * 2 1 3 13 13 N 1.46499 * 109.47198 * 299.99984 * 12 2 1 14 14 C 1.34777 * 119.99665 * 180.27868 * 13 12 2 15 15 O 1.21583 * 120.00270 * 359.72083 * 14 13 12 16 16 N 1.34775 * 119.99585 * 179.72218 * 14 13 12 17 17 C 1.47246 * 135.94676 * 359.63072 * 16 14 13 18 18 C 1.52766 * 87.63852 * 153.79877 * 17 16 14 19 19 C 1.47259 * 135.94200 * 179.97438 * 16 14 13 20 20 C 1.53358 * 115.68478 * 141.55210 * 18 17 16 21 21 C 1.55116 * 103.91548 * 108.95537 * 20 18 17 22 22 C 1.54971 * 102.89754 * 37.09044 * 21 20 18 23 23 C 1.52957 * 116.24748 * 269.29864 * 18 17 16 24 24 H 1.08996 * 109.47009 * 300.00615 * 1 2 3 25 25 H 1.09004 * 109.46783 * 60.00030 * 1 2 3 26 26 H 1.08998 * 109.47156 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47011 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.46658 * 300.00048 * 3 2 1 29 29 H 1.08996 * 109.47069 * 59.99427 * 3 2 1 30 30 H 0.96999 * 120.00239 * 180.02562 * 7 6 4 31 31 H 1.09009 * 109.46730 * 179.97438 * 12 2 1 32 32 H 1.08998 * 109.46846 * 60.00315 * 12 2 1 33 33 H 0.97001 * 119.99790 * 359.97438 * 13 12 2 34 34 H 1.08992 * 113.51090 * 268.47114 * 17 16 14 35 35 H 1.08998 * 113.50951 * 39.04114 * 17 16 14 36 36 H 1.08994 * 113.50831 * 320.96882 * 19 16 14 37 37 H 1.09003 * 113.50149 * 91.47007 * 19 16 14 38 38 H 1.09006 * 110.53364 * 227.55504 * 20 18 17 39 39 H 1.08994 * 110.54100 * 350.34380 * 20 18 17 40 40 H 1.09006 * 110.72528 * 278.74270 * 21 20 18 41 41 H 1.08997 * 110.73083 * 155.44641 * 21 20 18 42 42 H 1.08994 * 110.48218 * 203.88073 * 22 21 20 43 43 H 1.09010 * 110.47788 * 81.25682 * 22 21 20 44 44 H 1.09003 * 110.11202 * 347.27374 * 23 18 17 45 45 H 1.09002 * 110.11151 * 108.85868 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6992 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6035 8 14 2.3225 -1.1198 -4.0079 9 1 1.3449 -2.1618 -4.4122 10 1 2.4874 -0.1404 -5.1120 11 1 3.6308 -1.7568 -3.7118 12 6 2.0399 -0.7212 1.2493 13 7 1.5516 -0.0305 2.4454 14 6 1.8818 -0.4877 3.6695 15 8 2.5808 -1.4763 3.7812 16 7 1.4372 0.1510 4.7699 17 6 0.6088 1.3374 5.0427 18 6 0.2382 0.6936 6.3776 19 6 1.5724 -0.0290 6.2252 20 6 0.1295 1.6517 7.5701 21 6 -1.3924 1.7091 7.8649 22 6 -1.8522 0.2541 7.5948 23 6 -1.0093 -0.1915 6.3786 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.1301 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 0.7090 1.1613 -3.4845 31 1 3.1300 -0.7216 1.2491 32 1 1.6766 -1.7488 1.2493 33 1 0.9942 0.7584 2.3564 34 1 1.1860 2.2558 5.1483 35 1 -0.2350 1.4446 4.3611 36 1 1.5401 -1.0722 6.5391 37 1 2.4140 0.5149 6.6541 38 1 0.6706 1.2555 8.4294 39 1 0.5048 2.6394 7.3026 40 1 -1.8905 2.4031 7.1877 41 1 -1.5740 1.9846 8.9037 42 1 -2.9145 0.2286 7.3523 43 1 -1.6416 -0.3787 8.4571 44 1 -1.5735 -0.0450 5.4576 45 1 -0.7256 -1.2389 6.4815 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335589486.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:10 Heat of formation + Delta-G solvation = -9.460959 kcal Electronic energy + Delta-G solvation = -22674.811728 eV Core-core repulsion = 19499.878833 eV Total energy + Delta-G solvation = -3174.932895 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.93907 -38.67284 -36.37622 -35.54532 -33.16272 -30.93739 -29.32507 -28.90346 -26.24668 -25.69996 -25.66328 -25.16424 -23.77961 -21.02275 -19.85459 -18.75061 -18.57673 -17.68026 -16.22997 -15.86767 -15.64542 -15.24243 -15.01234 -14.62488 -14.10781 -13.76377 -13.62017 -13.39318 -12.91383 -12.71623 -12.69554 -12.15469 -11.77422 -11.59764 -11.35834 -11.33836 -11.31256 -11.17355 -11.04064 -10.84240 -10.77394 -10.67142 -10.36962 -10.35808 -10.18193 -9.67593 -9.60417 -9.27733 -8.76718 -8.66497 -8.38080 -8.08090 -6.00079 -4.09915 2.80931 3.29935 3.36672 3.41292 3.65430 4.00279 4.23966 4.34583 4.42024 4.57481 4.86552 4.91090 5.12507 5.20936 5.26654 5.34480 5.40076 5.42116 5.52294 5.55367 5.65489 5.68608 5.76262 5.80489 5.89203 5.95632 6.09182 6.14403 6.29018 6.39632 6.54102 6.83505 6.85545 6.97186 7.05801 7.14759 7.39615 7.58317 7.63954 7.72344 8.03295 8.15096 8.41096 8.51586 8.90019 9.10882 9.55694 11.01376 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.034090 B = 0.003480 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.169232 B = 8044.725428 C = 8337.460423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.056 3.944 3 C -0.129 4.129 4 C -0.505 4.505 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.151 3.849 13 N -0.730 5.730 14 C 0.728 3.272 15 O -0.598 6.598 16 N -0.668 5.668 17 C 0.111 3.889 18 C -0.100 4.100 19 C 0.137 3.863 20 C -0.107 4.107 21 C -0.124 4.124 22 C -0.124 4.124 23 C -0.097 4.097 24 H 0.004 0.996 25 H 0.085 0.915 26 H 0.026 0.974 27 H 0.026 0.974 28 H 0.085 0.915 29 H 0.005 0.995 30 H 0.259 0.741 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.393 0.607 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.070 0.930 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.568 4.719 19.498 20.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.056 3.944 3 C -0.187 4.187 4 C -0.544 4.544 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.722 3.278 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 C 0.028 3.972 13 N -0.383 5.383 14 C 0.431 3.569 15 O -0.477 6.477 16 N -0.409 5.409 17 C -0.012 4.012 18 C -0.100 4.100 19 C 0.013 3.987 20 C -0.146 4.146 21 C -0.161 4.161 22 C -0.162 4.162 23 C -0.134 4.134 24 H 0.023 0.977 25 H 0.103 0.897 26 H 0.045 0.955 27 H 0.045 0.955 28 H 0.104 0.896 29 H 0.023 0.977 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.227 0.773 34 H 0.099 0.901 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.088 0.912 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.024 3.949 19.150 20.188 hybrid contribution 0.153 -0.025 -0.993 1.005 sum -4.871 3.924 18.157 19.204 Atomic orbital electron populations 1.21807 0.97783 0.99122 0.99914 1.18363 0.92796 0.92775 0.90514 1.21810 0.98556 0.98363 0.99926 1.20996 1.31422 1.12079 0.89869 0.92393 1.24878 0.94892 0.94915 0.98827 1.69806 1.36797 1.22741 1.23169 0.86567 0.79348 0.79371 0.82563 1.20717 1.21286 1.19889 1.21597 0.97843 0.95426 0.82356 1.45439 1.55577 1.33079 1.04240 1.15421 0.79585 0.82422 0.79474 1.90880 1.43279 1.28053 1.85456 1.48715 1.56340 1.30643 1.05219 1.23016 0.93918 0.89720 0.94588 1.22231 0.95554 0.97001 0.95263 1.22718 0.95757 1.01023 0.79196 1.22163 0.96831 0.98708 0.96849 1.22526 0.95505 0.96926 1.01186 1.22427 0.99459 0.96342 0.97946 1.21785 0.94008 0.98907 0.98719 0.97663 0.89651 0.95472 0.95472 0.89638 0.97652 0.93044 0.93003 0.93000 0.77262 0.90137 0.90682 0.90698 0.90448 0.90885 0.91064 0.91334 0.91624 0.91634 0.91648 0.91178 0.91243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.97 8.08 37.16 0.30 -2.67 16 2 C 0.06 1.34 0.50 -155.66 -0.08 1.26 16 3 C -0.13 -2.98 8.08 37.16 0.30 -2.68 16 4 C -0.51 -13.50 8.01 -34.44 -0.28 -13.78 16 5 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 6 C 0.07 1.76 5.15 -17.82 -0.09 1.67 16 7 N -0.89 -23.85 9.35 55.43 0.52 -23.33 16 8 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 12 C 0.15 3.39 4.50 -4.04 -0.02 3.37 16 13 N -0.73 -14.23 4.96 -65.22 -0.32 -14.55 16 14 C 0.73 14.33 8.79 -86.92 -0.76 13.57 16 15 O -0.60 -14.15 17.12 5.29 0.09 -14.06 16 16 N -0.67 -9.94 3.67 -190.83 -0.70 -10.64 16 17 C 0.11 1.20 7.53 -7.78 -0.06 1.14 16 18 C -0.10 -0.90 1.24 -154.74 -0.19 -1.10 16 19 C 0.14 1.58 7.88 -7.92 -0.06 1.51 16 20 C -0.11 -0.73 6.24 -25.43 -0.16 -0.89 16 21 C -0.12 -0.79 6.92 -24.57 -0.17 -0.96 16 22 C -0.12 -0.89 6.85 -24.89 -0.17 -1.06 16 23 C -0.10 -0.89 6.33 -25.95 -0.16 -1.06 16 24 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 25 H 0.08 2.16 6.07 -51.93 -0.32 1.85 16 26 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.08 2.17 6.07 -51.93 -0.32 1.85 16 29 H 0.00 0.09 6.86 -51.93 -0.36 -0.26 16 30 H 0.26 6.74 8.31 -40.82 -0.34 6.40 16 31 H 0.05 1.23 8.14 -51.92 -0.42 0.81 16 32 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 33 H 0.39 7.01 5.87 -40.82 -0.24 6.77 16 34 H 0.08 0.76 7.96 -51.93 -0.41 0.34 16 35 H 0.07 0.80 7.93 -51.93 -0.41 0.38 16 36 H 0.07 0.91 7.91 -51.93 -0.41 0.50 16 37 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.07 0.45 8.13 -51.93 -0.42 0.03 16 39 H 0.07 0.44 7.83 -51.93 -0.41 0.03 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 44 H 0.07 0.70 7.82 -51.93 -0.41 0.30 16 45 H 0.07 0.70 7.79 -51.93 -0.40 0.30 16 LS Contribution 348.49 15.07 5.25 5.25 Total: -1.00 -30.24 348.49 -9.59 -39.83 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -7.80 Total: 3.22 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: -1.61 Total: -1.67 kcal Atomic # 7 Polarization: -48.02 SS G_CDS: -0.50 Total: -48.53 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: 0.09 Total: -14.06 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.24 -9.59 -39.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335589486.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.372 kcal (2) G-P(sol) polarization free energy of solvation -30.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds