Wall clock time and date at job start Tue Mar 31 2020 02:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47431 * 2 1 4 4 C 1.50700 * 109.47092 * 239.99574 * 2 1 3 5 5 H 1.08002 * 119.99770 * 239.99893 * 4 2 1 6 6 C 1.37876 * 119.99720 * 60.00211 * 4 2 1 7 7 N 1.31514 * 120.00513 * 0.02562 * 6 4 2 8 8 Si 1.86809 * 119.99651 * 179.97438 * 6 4 2 9 9 H 1.48491 * 109.47115 * 89.99974 * 8 6 4 10 10 H 1.48509 * 109.46780 * 210.00159 * 8 6 4 11 11 H 1.48497 * 109.46888 * 329.99916 * 8 6 4 12 12 C 1.53004 * 109.46876 * 119.99637 * 2 1 3 13 13 N 1.46499 * 109.47198 * 299.99984 * 12 2 1 14 14 C 1.34777 * 119.99665 * 180.27868 * 13 12 2 15 15 O 1.21583 * 120.00270 * 359.72083 * 14 13 12 16 16 N 1.34775 * 119.99585 * 179.72218 * 14 13 12 17 17 C 1.47246 * 135.94676 * 359.63072 * 16 14 13 18 18 C 1.52766 * 87.63852 * 153.79877 * 17 16 14 19 19 C 1.47259 * 135.94200 * 179.97438 * 16 14 13 20 20 C 1.53358 * 115.68478 * 141.55210 * 18 17 16 21 21 C 1.55116 * 103.91548 * 108.95537 * 20 18 17 22 22 C 1.54971 * 102.89754 * 37.09044 * 21 20 18 23 23 C 1.52957 * 116.24748 * 269.29864 * 18 17 16 24 24 H 1.08996 * 109.47009 * 300.00615 * 1 2 3 25 25 H 1.09004 * 109.46783 * 60.00030 * 1 2 3 26 26 H 1.08998 * 109.47156 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47011 * 180.02562 * 3 2 1 28 28 H 1.09004 * 109.46658 * 300.00048 * 3 2 1 29 29 H 1.08996 * 109.47069 * 59.99427 * 3 2 1 30 30 H 0.96999 * 120.00239 * 180.02562 * 7 6 4 31 31 H 1.09009 * 109.46730 * 179.97438 * 12 2 1 32 32 H 1.08998 * 109.46846 * 60.00315 * 12 2 1 33 33 H 0.97001 * 119.99790 * 359.97438 * 13 12 2 34 34 H 1.08992 * 113.51090 * 268.47114 * 17 16 14 35 35 H 1.08998 * 113.50951 * 39.04114 * 17 16 14 36 36 H 1.08994 * 113.50831 * 320.96882 * 19 16 14 37 37 H 1.09003 * 113.50149 * 91.47007 * 19 16 14 38 38 H 1.09006 * 110.53364 * 227.55504 * 20 18 17 39 39 H 1.08994 * 110.54100 * 350.34380 * 20 18 17 40 40 H 1.09006 * 110.72528 * 278.74270 * 21 20 18 41 41 H 1.08997 * 110.73083 * 155.44641 * 21 20 18 42 42 H 1.08994 * 110.48218 * 203.88073 * 22 21 20 43 43 H 1.09010 * 110.47788 * 81.25682 * 22 21 20 44 44 H 1.09003 * 110.11202 * 347.27374 * 23 18 17 45 45 H 1.09002 * 110.11151 * 108.85868 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6992 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6035 8 14 2.3225 -1.1198 -4.0079 9 1 1.3449 -2.1618 -4.4122 10 1 2.4874 -0.1404 -5.1120 11 1 3.6308 -1.7568 -3.7118 12 6 2.0399 -0.7212 1.2493 13 7 1.5516 -0.0305 2.4454 14 6 1.8818 -0.4877 3.6695 15 8 2.5808 -1.4763 3.7812 16 7 1.4372 0.1510 4.7699 17 6 0.6088 1.3374 5.0427 18 6 0.2382 0.6936 6.3776 19 6 1.5724 -0.0290 6.2252 20 6 0.1295 1.6517 7.5701 21 6 -1.3924 1.7091 7.8649 22 6 -1.8522 0.2541 7.5948 23 6 -1.0093 -0.1915 6.3786 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.1301 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 0.7090 1.1613 -3.4845 31 1 3.1300 -0.7216 1.2491 32 1 1.6766 -1.7488 1.2493 33 1 0.9942 0.7584 2.3564 34 1 1.1860 2.2558 5.1483 35 1 -0.2350 1.4446 4.3611 36 1 1.5401 -1.0722 6.5391 37 1 2.4140 0.5149 6.6541 38 1 0.6706 1.2555 8.4294 39 1 0.5048 2.6394 7.3026 40 1 -1.8905 2.4031 7.1877 41 1 -1.5740 1.9846 8.9037 42 1 -2.9145 0.2286 7.3523 43 1 -1.6416 -0.3787 8.4571 44 1 -1.5735 -0.0450 5.4576 45 1 -0.7256 -1.2389 6.4815 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335589486.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:09 Heat of formation + Delta-G solvation = -26.598831 kcal Electronic energy + Delta-G solvation = -22675.554882 eV Core-core repulsion = 19499.878833 eV Total energy + Delta-G solvation = -3175.676048 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.95525 -40.10327 -38.10740 -36.48711 -34.97400 -32.79478 -30.39338 -29.58014 -27.59476 -27.51107 -27.15726 -26.69860 -25.07367 -21.63337 -21.24265 -20.62030 -19.38491 -18.99827 -17.81215 -17.28020 -16.93424 -16.66399 -16.30486 -15.78764 -15.42875 -15.16345 -14.93857 -14.51374 -14.44874 -14.13487 -14.03795 -13.53313 -13.22936 -13.12156 -12.71390 -12.62421 -12.57230 -12.43274 -12.27429 -12.14485 -11.97863 -11.88538 -11.76497 -11.51455 -11.33843 -11.30765 -11.18257 -11.03907 -10.73007 -10.41619 -10.16740 -9.46468 -8.03399 -6.19311 1.42405 1.44481 1.51298 1.56160 2.15240 2.45102 3.01895 3.20052 3.23334 3.61974 3.79239 4.08322 4.30817 4.36378 4.44127 4.47982 4.49422 4.56887 4.59946 4.63287 4.68111 4.79405 4.81924 4.91714 4.97349 5.02388 5.05568 5.08003 5.11768 5.16527 5.17140 5.30669 5.34476 5.35279 5.46648 5.56845 5.59431 5.64361 5.65775 6.11844 6.18366 6.30160 6.42134 6.84217 7.06147 7.48345 7.59413 8.95810 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.034090 B = 0.003480 C = 0.003358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.169232 B = 8044.725428 C = 8337.460423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.053 3.947 3 C -0.117 4.117 4 C -0.531 4.531 5 H 0.044 0.956 6 C 0.029 3.971 7 N -0.898 5.898 8 Si 0.947 3.053 9 H -0.278 1.278 10 H -0.281 1.281 11 H -0.276 1.276 12 C 0.168 3.832 13 N -0.723 5.723 14 C 0.722 3.278 15 O -0.647 6.647 16 N -0.673 5.673 17 C 0.108 3.892 18 C -0.082 4.082 19 C 0.129 3.871 20 C -0.101 4.101 21 C -0.120 4.120 22 C -0.121 4.121 23 C -0.102 4.102 24 H 0.032 0.968 25 H 0.064 0.936 26 H 0.016 0.984 27 H 0.017 0.983 28 H 0.065 0.935 29 H 0.033 0.967 30 H 0.261 0.739 31 H 0.034 0.966 32 H 0.033 0.967 33 H 0.403 0.597 34 H 0.104 0.896 35 H 0.078 0.922 36 H 0.063 0.937 37 H 0.098 0.902 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.070 0.930 41 H 0.080 0.920 42 H 0.068 0.932 43 H 0.070 0.930 44 H 0.059 0.941 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.345 6.346 21.139 22.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.052 3.948 3 C -0.175 4.175 4 C -0.570 4.570 5 H 0.062 0.938 6 C -0.171 4.171 7 N -0.537 5.537 8 Si 0.773 3.227 9 H -0.204 1.204 10 H -0.206 1.206 11 H -0.202 1.202 12 C 0.044 3.956 13 N -0.378 5.378 14 C 0.425 3.575 15 O -0.530 6.530 16 N -0.412 5.412 17 C -0.014 4.014 18 C -0.083 4.083 19 C 0.006 3.994 20 C -0.139 4.139 21 C -0.158 4.158 22 C -0.158 4.158 23 C -0.140 4.140 24 H 0.051 0.949 25 H 0.083 0.917 26 H 0.036 0.964 27 H 0.036 0.964 28 H 0.083 0.917 29 H 0.052 0.948 30 H 0.071 0.929 31 H 0.052 0.948 32 H 0.051 0.949 33 H 0.239 0.761 34 H 0.122 0.878 35 H 0.097 0.903 36 H 0.081 0.919 37 H 0.116 0.884 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.089 0.911 41 H 0.098 0.902 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.078 0.922 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.841 5.629 20.839 22.362 hybrid contribution 0.366 -0.531 -1.428 1.567 sum -5.475 5.098 19.411 20.803 Atomic orbital electron populations 1.21636 0.97072 0.98551 1.00207 1.18355 0.93279 0.93079 0.90057 1.21639 0.97863 0.97758 1.00238 1.21261 1.31909 1.12250 0.91556 0.93780 1.25452 0.95087 0.95576 1.00937 1.69900 1.36936 1.23185 1.23678 0.85734 0.78644 0.78502 0.79776 1.20428 1.20632 1.20150 1.21148 0.96585 0.94630 0.83255 1.45135 1.55803 1.33179 1.03651 1.15580 0.79352 0.82287 0.80322 1.90835 1.45481 1.30327 1.86329 1.48828 1.55564 1.31571 1.05264 1.23368 0.93629 0.89110 0.95287 1.22123 0.93884 0.96744 0.95587 1.23064 0.98094 1.01190 0.77028 1.22174 0.97407 0.98563 0.95753 1.22529 0.95006 0.96068 1.02178 1.22413 0.99242 0.97186 0.96986 1.21822 0.94492 0.98223 0.99419 0.94877 0.91670 0.96434 0.96372 0.91668 0.94823 0.92936 0.94803 0.94875 0.76111 0.87774 0.90328 0.91873 0.88426 0.89810 0.89661 0.91135 0.90165 0.91328 0.91122 0.92212 0.92793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.37 8.08 71.98 0.58 -4.78 16 2 C 0.05 2.55 0.50 -52.93 -0.03 2.52 16 3 C -0.12 -5.37 8.08 71.98 0.58 -4.78 16 4 C -0.53 -28.88 8.01 25.60 0.21 -28.67 16 5 H 0.04 2.45 7.74 -2.91 -0.02 2.43 16 6 C 0.03 1.57 5.15 84.65 0.44 2.00 16 7 N -0.90 -48.29 9.35 21.45 0.20 -48.09 16 8 Si 0.95 43.17 29.54 68.60 2.03 45.19 16 9 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 10 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 11 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 12 C 0.17 7.72 4.50 86.38 0.39 8.11 16 13 N -0.72 -27.98 4.96 -478.53 -2.37 -30.35 16 14 C 0.72 28.45 8.79 179.05 1.57 30.03 16 15 O -0.65 -31.40 17.12 -3.98 -0.07 -31.47 16 16 N -0.67 -19.26 3.67 -875.91 -3.21 -22.47 16 17 C 0.11 2.04 7.53 83.55 0.63 2.67 16 18 C -0.08 -1.30 1.24 -52.32 -0.07 -1.36 16 19 C 0.13 2.76 7.88 83.45 0.66 3.42 16 20 C -0.10 -0.99 6.24 31.44 0.20 -0.79 16 21 C -0.12 -1.12 6.92 31.99 0.22 -0.89 16 22 C -0.12 -1.45 6.85 31.79 0.22 -1.23 16 23 C -0.10 -1.74 6.33 31.10 0.20 -1.54 16 24 H 0.03 1.29 6.86 -2.39 -0.02 1.27 16 25 H 0.06 3.28 6.07 -2.38 -0.01 3.26 16 26 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.06 3.27 6.07 -2.38 -0.01 3.26 16 29 H 0.03 1.30 6.86 -2.39 -0.02 1.29 16 30 H 0.26 13.46 8.31 -92.71 -0.77 12.69 16 31 H 0.03 1.65 8.14 -2.38 -0.02 1.64 16 32 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.40 13.74 5.87 -92.71 -0.54 13.20 16 34 H 0.10 1.55 7.96 -2.39 -0.02 1.53 16 35 H 0.08 1.46 7.93 -2.39 -0.02 1.44 16 36 H 0.06 1.51 7.91 -2.39 -0.02 1.49 16 37 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.08 0.70 8.13 -2.38 -0.02 0.68 16 39 H 0.08 0.66 7.83 -2.39 -0.02 0.64 16 40 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 41 H 0.08 0.56 8.14 -2.39 -0.02 0.55 16 42 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 44 H 0.06 1.14 7.82 -2.39 -0.02 1.12 16 45 H 0.05 1.08 7.79 -2.39 -0.02 1.06 16 Total: -1.00 -66.18 348.49 2.78 -63.40 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: 0.41 Total: 19.11 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: 5.79 Total: 4.69 kcal Atomic # 7 Polarization: -95.53 SS G_CDS: -5.39 Total: -100.91 kcal Atomic # 8 Polarization: -31.40 SS G_CDS: -0.07 Total: -31.47 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.19 kcal Total: -66.18 2.78 -63.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335589486.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.798 kcal (2) G-P(sol) polarization free energy of solvation -66.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds