Wall clock time and date at job start Tue Mar 31 2020 02:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47428 * 2 1 4 4 C 1.50697 * 109.47225 * 239.99959 * 2 1 3 5 5 H 1.08000 * 120.00059 * 237.01221 * 4 2 1 6 6 C 1.37877 * 120.00228 * 57.00431 * 4 2 1 7 7 N 1.31517 * 119.99437 * 5.54985 * 6 4 2 8 8 Si 1.86794 * 120.00275 * 185.54227 * 6 4 2 9 9 H 1.48500 * 109.47178 * 85.00527 * 8 6 4 10 10 H 1.48497 * 109.47222 * 205.00401 * 8 6 4 11 11 H 1.48506 * 109.47392 * 325.00494 * 8 6 4 12 12 C 1.53008 * 109.47182 * 119.99949 * 2 1 3 13 13 N 1.46500 * 109.46719 * 300.00057 * 12 2 1 14 14 C 1.34784 * 119.99683 * 179.97438 * 13 12 2 15 15 O 1.21592 * 119.99613 * 0.02562 * 14 13 12 16 16 N 1.34765 * 120.00017 * 179.97438 * 14 13 12 17 17 C 1.47374 * 125.58019 * 0.02562 * 16 14 13 18 18 C 1.54873 * 104.81878 * 155.30489 * 17 16 14 19 19 C 1.54912 * 101.79765 * 37.05598 * 18 17 16 20 20 H 1.09003 * 112.32624 * 86.24166 * 19 18 17 21 21 C 1.53486 * 109.14381 * 211.89190 * 19 18 17 22 22 C 1.54218 * 106.68147 * 113.08917 * 21 19 18 23 23 C 1.54750 * 104.15633 * 335.06380 * 22 21 19 24 24 C 1.46975 * 125.58113 * 180.02562 * 16 14 13 25 25 H 1.09006 * 111.81173 * 58.11909 * 24 16 14 26 26 H 1.09003 * 109.47292 * 293.93895 * 1 2 3 27 27 H 1.09001 * 109.47023 * 53.93299 * 1 2 3 28 28 H 1.08999 * 109.47448 * 173.93187 * 1 2 3 29 29 H 1.08997 * 109.47025 * 179.97438 * 3 2 1 30 30 H 1.08994 * 109.46950 * 299.99785 * 3 2 1 31 31 H 1.08996 * 109.46882 * 59.99866 * 3 2 1 32 32 H 0.97002 * 119.99602 * 179.97438 * 7 6 4 33 33 H 1.08996 * 109.46913 * 179.97438 * 12 2 1 34 34 H 1.09004 * 109.46336 * 59.99785 * 12 2 1 35 35 H 0.96991 * 120.00457 * 0.02562 * 13 12 2 36 36 H 1.09004 * 110.36884 * 36.47409 * 17 16 14 37 37 H 1.08996 * 110.46677 * 274.18795 * 17 16 14 38 38 H 1.08998 * 110.96755 * 155.19726 * 18 17 16 39 39 H 1.09003 * 110.96372 * 278.91927 * 18 17 16 40 40 H 1.09000 * 110.00629 * 353.78726 * 21 19 18 41 41 H 1.08996 * 110.06110 * 232.42238 * 21 19 18 42 42 H 1.09004 * 110.49741 * 216.39437 * 22 21 19 43 43 H 1.09005 * 110.60928 * 93.79058 * 22 21 19 44 44 H 1.09004 * 110.67165 * 279.37855 * 23 22 21 45 45 H 1.09005 * 110.66914 * 156.23910 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6924 -1.5595 -1.1321 6 6 1.6490 -0.2765 -2.4818 7 7 0.9351 0.8209 -2.6071 8 14 2.1441 -1.2471 -3.9991 9 1 1.1618 -2.3361 -4.2323 10 1 2.1708 -0.3439 -5.1775 11 1 3.4931 -1.8329 -3.7937 12 6 2.0400 -0.7213 1.2493 13 7 1.5516 -0.0306 2.4454 14 6 1.8768 -0.4914 3.6696 15 8 2.5758 -1.4800 3.7811 16 7 1.4280 0.1442 4.7699 17 6 0.5776 1.3479 4.7780 18 6 -0.1573 1.3045 6.1406 19 6 0.9421 0.7417 7.0757 20 1 1.5889 1.5243 7.4722 21 6 0.2831 -0.0958 8.1803 22 6 0.7122 -1.5579 7.9429 23 6 1.0347 -1.6169 6.4305 24 6 1.7064 -0.2495 6.1583 25 1 2.7764 -0.2745 6.3654 26 1 -0.3634 0.4170 0.9393 27 1 -0.3633 0.6050 -0.8307 28 1 -0.3634 -1.0219 -0.1086 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 0.6658 1.1263 -3.4874 33 1 3.1299 -0.7216 1.2490 34 1 1.6765 -1.7489 1.2492 35 1 0.9936 0.7578 2.3564 36 1 -0.1402 1.3108 3.9585 37 1 1.1892 2.2471 4.7054 38 1 -0.4605 2.3040 6.4523 39 1 -1.0156 0.6337 6.0996 40 1 -0.8016 -0.0102 8.1162 41 1 0.6264 0.2396 9.1589 42 1 -0.1031 -2.2393 8.1861 43 1 1.5976 -1.7984 8.5316 44 1 0.1205 -1.7196 5.8458 45 1 1.7239 -2.4336 6.2156 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335591783.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:11:47 Heat of formation + Delta-G solvation = -41.095022 kcal Electronic energy + Delta-G solvation = -23037.277773 eV Core-core repulsion = 19860.973123 eV Total energy + Delta-G solvation = -3176.304650 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.52172 -38.46282 -36.24878 -34.62197 -33.07466 -31.49322 -30.71626 -27.77877 -27.24594 -25.70221 -25.48124 -24.65174 -22.77092 -20.76901 -20.22286 -19.16391 -18.72296 -17.94034 -16.35096 -15.88674 -15.44772 -15.17369 -14.69711 -14.44932 -13.90396 -13.76771 -13.50232 -13.06226 -12.89139 -12.77609 -12.60807 -12.15055 -12.01037 -11.89666 -11.38042 -11.23955 -11.16345 -10.99171 -10.84867 -10.81730 -10.74790 -10.66825 -10.51405 -10.34694 -10.18844 -9.67133 -9.59180 -9.27513 -8.76815 -8.58505 -8.36550 -8.05003 -6.00266 -4.08716 2.98360 3.30856 3.37098 3.41250 3.68047 4.13573 4.36297 4.40842 4.50395 4.62055 4.93224 5.00996 5.13283 5.20995 5.26932 5.34551 5.39407 5.51022 5.57097 5.58959 5.71106 5.75353 5.86310 5.96898 6.12777 6.16672 6.24862 6.26910 6.40597 6.51342 6.57393 6.84570 6.85110 6.97031 7.06204 7.15571 7.38994 7.49784 7.58690 7.72924 8.02225 8.14707 8.40899 8.51006 8.90883 9.11970 9.56462 11.01858 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.038292 B = 0.003696 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.048407 B = 7573.548456 C = 7936.254619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.056 3.944 3 C -0.128 4.128 4 C -0.506 4.506 5 H 0.058 0.942 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.275 1.275 12 C 0.150 3.850 13 N -0.732 5.732 14 C 0.715 3.285 15 O -0.595 6.595 16 N -0.639 5.639 17 C 0.099 3.901 18 C -0.125 4.125 19 C -0.102 4.102 20 H 0.090 0.910 21 C -0.114 4.114 22 C -0.124 4.124 23 C -0.129 4.129 24 C 0.157 3.843 25 H 0.082 0.918 26 H 0.005 0.995 27 H 0.081 0.919 28 H 0.029 0.971 29 H 0.026 0.974 30 H 0.085 0.915 31 H 0.004 0.996 32 H 0.259 0.741 33 H 0.051 0.949 34 H 0.052 0.948 35 H 0.393 0.607 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.066 0.934 44 H 0.068 0.932 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.861 3.060 19.173 19.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.055 3.945 3 C -0.186 4.186 4 C -0.545 4.545 5 H 0.076 0.924 6 C -0.134 4.134 7 N -0.524 5.524 8 Si 0.721 3.279 9 H -0.206 1.206 10 H -0.214 1.214 11 H -0.200 1.200 12 C 0.027 3.973 13 N -0.387 5.387 14 C 0.417 3.583 15 O -0.474 6.474 16 N -0.378 5.378 17 C -0.025 4.025 18 C -0.163 4.163 19 C -0.121 4.121 20 H 0.108 0.892 21 C -0.152 4.152 22 C -0.162 4.162 23 C -0.168 4.168 24 C 0.053 3.947 25 H 0.100 0.900 26 H 0.024 0.976 27 H 0.099 0.901 28 H 0.048 0.952 29 H 0.045 0.955 30 H 0.104 0.896 31 H 0.023 0.977 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.228 0.772 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.099 0.901 39 H 0.096 0.904 40 H 0.087 0.913 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.087 0.913 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.382 2.392 18.964 19.412 hybrid contribution -0.043 -0.061 -0.977 0.979 sum -3.426 2.331 17.988 18.459 Atomic orbital electron populations 1.21782 0.97776 1.00090 0.98791 1.18363 0.92749 0.92781 0.90600 1.21825 0.98575 0.98339 0.99851 1.20974 1.29280 1.14309 0.89917 0.92406 1.24874 0.95008 0.94782 0.98778 1.69833 1.37947 1.21418 1.23225 0.86595 0.79055 0.79905 0.82356 1.20641 1.21366 1.19954 1.21567 0.97846 0.95424 0.82416 1.45538 1.55597 1.33108 1.04431 1.15601 0.80251 0.82537 0.79896 1.90875 1.43262 1.27650 1.85629 1.47643 1.54912 1.30387 1.04839 1.22241 0.93408 0.88430 0.98390 1.22866 0.97541 1.01831 0.94016 1.22688 0.96738 0.97510 0.95132 0.89195 1.22081 1.00377 0.94948 0.97793 1.22335 1.01108 0.96220 0.96557 1.22793 1.00984 0.97756 0.95237 1.22177 0.98849 0.93887 0.79785 0.90008 0.97639 0.90076 0.95218 0.95484 0.89647 0.97723 0.93058 0.93011 0.93001 0.77208 0.90925 0.91685 0.90079 0.90449 0.91350 0.91740 0.91628 0.91544 0.91299 0.90802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.90 8.03 37.15 0.30 -2.60 16 2 C 0.06 1.32 0.50 -155.66 -0.08 1.24 16 3 C -0.13 -2.95 8.11 37.16 0.30 -2.64 16 4 C -0.51 -13.48 8.01 -34.44 -0.28 -13.75 16 5 H 0.06 1.56 7.75 -52.49 -0.41 1.15 16 6 C 0.07 1.78 5.13 -17.82 -0.09 1.69 16 7 N -0.89 -23.79 9.45 55.43 0.52 -23.26 16 8 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 12 C 0.15 3.35 4.50 -4.04 -0.02 3.33 16 13 N -0.73 -14.01 4.86 -65.22 -0.32 -14.33 16 14 C 0.72 13.70 8.28 -86.92 -0.72 12.98 16 15 O -0.60 -13.53 16.33 5.28 0.09 -13.45 16 16 N -0.64 -9.40 2.97 -167.22 -0.50 -9.90 16 17 C 0.10 1.11 6.58 -2.58 -0.02 1.09 16 18 C -0.12 -1.06 6.32 -24.73 -0.16 -1.22 16 19 C -0.10 -0.90 3.84 -88.21 -0.34 -1.24 16 20 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 21 C -0.11 -0.87 6.35 -25.84 -0.16 -1.04 16 22 C -0.12 -1.11 6.84 -25.17 -0.17 -1.28 16 23 C -0.13 -1.59 5.88 -24.88 -0.15 -1.74 16 24 C 0.16 1.97 3.67 -65.59 -0.24 1.73 16 25 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 26 H 0.00 0.09 6.71 -51.93 -0.35 -0.25 16 27 H 0.08 2.02 6.25 -51.93 -0.32 1.70 16 28 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.08 2.15 6.10 -51.93 -0.32 1.84 16 31 H 0.00 0.08 6.86 -51.93 -0.36 -0.28 16 32 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 33 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.39 6.85 4.61 -40.82 -0.19 6.66 16 36 H 0.07 0.82 7.26 -51.93 -0.38 0.44 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.08 0.68 7.62 -51.93 -0.40 0.28 16 40 H 0.07 0.49 7.37 -51.93 -0.38 0.11 16 41 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.07 0.93 8.09 -51.93 -0.42 0.51 16 45 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 341.17 15.07 5.14 5.14 Total: -1.00 -29.46 341.17 -9.63 -39.09 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -7.72 Total: 4.25 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: -1.82 Total: -3.46 kcal Atomic # 7 Polarization: -47.20 SS G_CDS: -0.29 Total: -47.49 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: 0.09 Total: -13.45 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.46 -9.63 -39.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335591783.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.003 kcal (2) G-P(sol) polarization free energy of solvation -29.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds