Wall clock time and date at job start Tue Mar 31 2020 02:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53002 * 109.47428 * 2 1 4 4 C 1.50697 * 109.47225 * 239.99959 * 2 1 3 5 5 H 1.08000 * 120.00059 * 237.01221 * 4 2 1 6 6 C 1.37877 * 120.00228 * 57.00431 * 4 2 1 7 7 N 1.31517 * 119.99437 * 5.54985 * 6 4 2 8 8 Si 1.86794 * 120.00275 * 185.54227 * 6 4 2 9 9 H 1.48500 * 109.47178 * 85.00527 * 8 6 4 10 10 H 1.48497 * 109.47222 * 205.00401 * 8 6 4 11 11 H 1.48506 * 109.47392 * 325.00494 * 8 6 4 12 12 C 1.53008 * 109.47182 * 119.99949 * 2 1 3 13 13 N 1.46500 * 109.46719 * 300.00057 * 12 2 1 14 14 C 1.34784 * 119.99683 * 179.97438 * 13 12 2 15 15 O 1.21592 * 119.99613 * 0.02562 * 14 13 12 16 16 N 1.34765 * 120.00017 * 179.97438 * 14 13 12 17 17 C 1.47374 * 125.58019 * 0.02562 * 16 14 13 18 18 C 1.54873 * 104.81878 * 155.30489 * 17 16 14 19 19 C 1.54912 * 101.79765 * 37.05598 * 18 17 16 20 20 H 1.09003 * 112.32624 * 86.24166 * 19 18 17 21 21 C 1.53486 * 109.14381 * 211.89190 * 19 18 17 22 22 C 1.54218 * 106.68147 * 113.08917 * 21 19 18 23 23 C 1.54750 * 104.15633 * 335.06380 * 22 21 19 24 24 C 1.46975 * 125.58113 * 180.02562 * 16 14 13 25 25 H 1.09006 * 111.81173 * 58.11909 * 24 16 14 26 26 H 1.09003 * 109.47292 * 293.93895 * 1 2 3 27 27 H 1.09001 * 109.47023 * 53.93299 * 1 2 3 28 28 H 1.08999 * 109.47448 * 173.93187 * 1 2 3 29 29 H 1.08997 * 109.47025 * 179.97438 * 3 2 1 30 30 H 1.08994 * 109.46950 * 299.99785 * 3 2 1 31 31 H 1.08996 * 109.46882 * 59.99866 * 3 2 1 32 32 H 0.97002 * 119.99602 * 179.97438 * 7 6 4 33 33 H 1.08996 * 109.46913 * 179.97438 * 12 2 1 34 34 H 1.09004 * 109.46336 * 59.99785 * 12 2 1 35 35 H 0.96991 * 120.00457 * 0.02562 * 13 12 2 36 36 H 1.09004 * 110.36884 * 36.47409 * 17 16 14 37 37 H 1.08996 * 110.46677 * 274.18795 * 17 16 14 38 38 H 1.08998 * 110.96755 * 155.19726 * 18 17 16 39 39 H 1.09003 * 110.96372 * 278.91927 * 18 17 16 40 40 H 1.09000 * 110.00629 * 353.78726 * 21 19 18 41 41 H 1.08996 * 110.06110 * 232.42238 * 21 19 18 42 42 H 1.09004 * 110.49741 * 216.39437 * 22 21 19 43 43 H 1.09005 * 110.60928 * 93.79058 * 22 21 19 44 44 H 1.09004 * 110.67165 * 279.37855 * 23 22 21 45 45 H 1.09005 * 110.66914 * 156.23910 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6924 -1.5595 -1.1321 6 6 1.6490 -0.2765 -2.4818 7 7 0.9351 0.8209 -2.6071 8 14 2.1441 -1.2471 -3.9991 9 1 1.1618 -2.3361 -4.2323 10 1 2.1708 -0.3439 -5.1775 11 1 3.4931 -1.8329 -3.7937 12 6 2.0400 -0.7213 1.2493 13 7 1.5516 -0.0306 2.4454 14 6 1.8768 -0.4914 3.6696 15 8 2.5758 -1.4800 3.7811 16 7 1.4280 0.1442 4.7699 17 6 0.5776 1.3479 4.7780 18 6 -0.1573 1.3045 6.1406 19 6 0.9421 0.7417 7.0757 20 1 1.5889 1.5243 7.4722 21 6 0.2831 -0.0958 8.1803 22 6 0.7122 -1.5579 7.9429 23 6 1.0347 -1.6169 6.4305 24 6 1.7064 -0.2495 6.1583 25 1 2.7764 -0.2745 6.3654 26 1 -0.3634 0.4170 0.9393 27 1 -0.3633 0.6050 -0.8307 28 1 -0.3634 -1.0219 -0.1086 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 0.6658 1.1263 -3.4874 33 1 3.1299 -0.7216 1.2490 34 1 1.6765 -1.7489 1.2492 35 1 0.9936 0.7578 2.3564 36 1 -0.1402 1.3108 3.9585 37 1 1.1892 2.2471 4.7054 38 1 -0.4605 2.3040 6.4523 39 1 -1.0156 0.6337 6.0996 40 1 -0.8016 -0.0102 8.1162 41 1 0.6264 0.2396 9.1589 42 1 -0.1031 -2.2393 8.1861 43 1 1.5976 -1.7984 8.5316 44 1 0.1205 -1.7196 5.8458 45 1 1.7239 -2.4336 6.2156 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335591783.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:11:46 Heat of formation + Delta-G solvation = -57.279419 kcal Electronic energy + Delta-G solvation = -23037.979581 eV Core-core repulsion = 19860.973123 eV Total energy + Delta-G solvation = -3177.006459 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.66689 -39.79497 -38.03905 -35.71542 -34.80992 -32.74761 -32.26197 -28.81453 -28.10496 -27.59037 -27.40155 -26.37794 -23.85734 -21.64718 -21.32635 -20.59788 -20.19628 -19.25294 -17.82166 -17.33748 -16.91236 -16.62444 -16.34551 -15.68877 -15.20054 -14.97538 -14.73364 -14.68268 -14.24501 -14.02721 -13.76478 -13.71882 -13.26056 -13.10689 -12.91290 -12.79314 -12.69170 -12.59748 -12.25608 -12.14967 -11.99746 -11.72085 -11.66176 -11.54332 -11.50093 -11.33761 -11.21980 -11.11738 -10.73056 -10.40218 -10.10524 -9.41096 -8.03666 -6.18048 1.42899 1.45040 1.52792 1.68883 2.17433 2.45758 3.10441 3.20327 3.43916 3.59071 3.76033 4.17867 4.21202 4.31243 4.38464 4.44478 4.50187 4.54145 4.58275 4.68835 4.71483 4.77066 4.80237 4.96188 5.02778 5.05199 5.06860 5.08362 5.16077 5.16986 5.20077 5.30852 5.34082 5.36024 5.45220 5.57122 5.61720 5.65301 5.67204 6.11416 6.12608 6.19834 6.42216 6.85170 7.05425 7.49096 7.61573 8.96174 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.038292 B = 0.003696 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.048407 B = 7573.548456 C = 7936.254619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.052 3.948 3 C -0.116 4.116 4 C -0.532 4.532 5 H 0.043 0.957 6 C 0.030 3.970 7 N -0.898 5.898 8 Si 0.946 3.054 9 H -0.278 1.278 10 H -0.282 1.282 11 H -0.277 1.277 12 C 0.168 3.832 13 N -0.725 5.725 14 C 0.709 3.291 15 O -0.640 6.640 16 N -0.634 5.634 17 C 0.087 3.913 18 C -0.114 4.114 19 C -0.090 4.090 20 H 0.109 0.891 21 C -0.108 4.108 22 C -0.118 4.118 23 C -0.130 4.130 24 C 0.143 3.857 25 H 0.067 0.933 26 H 0.034 0.966 27 H 0.062 0.938 28 H 0.017 0.983 29 H 0.016 0.984 30 H 0.064 0.936 31 H 0.033 0.967 32 H 0.261 0.739 33 H 0.033 0.967 34 H 0.033 0.967 35 H 0.403 0.597 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.113 0.887 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.086 0.914 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.053 0.947 45 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.097 4.654 21.129 22.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.052 3.948 3 C -0.174 4.174 4 C -0.570 4.570 5 H 0.062 0.938 6 C -0.170 4.170 7 N -0.536 5.536 8 Si 0.772 3.228 9 H -0.204 1.204 10 H -0.207 1.207 11 H -0.202 1.202 12 C 0.044 3.956 13 N -0.381 5.381 14 C 0.411 3.589 15 O -0.522 6.522 16 N -0.372 5.372 17 C -0.035 4.035 18 C -0.152 4.152 19 C -0.109 4.109 20 H 0.127 0.873 21 C -0.145 4.145 22 C -0.156 4.156 23 C -0.169 4.169 24 C 0.039 3.961 25 H 0.086 0.914 26 H 0.053 0.947 27 H 0.081 0.919 28 H 0.036 0.964 29 H 0.035 0.965 30 H 0.083 0.917 31 H 0.052 0.948 32 H 0.070 0.930 33 H 0.051 0.949 34 H 0.051 0.949 35 H 0.240 0.760 36 H 0.091 0.909 37 H 0.097 0.903 38 H 0.131 0.869 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.104 0.896 42 H 0.093 0.907 43 H 0.090 0.910 44 H 0.072 0.928 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -4.654 4.032 20.960 21.846 hybrid contribution 0.359 -0.568 -1.552 1.691 sum -4.294 3.464 19.408 20.177 Atomic orbital electron populations 1.21610 0.96991 0.99127 0.99508 1.18360 0.93293 0.93072 0.90125 1.21650 0.97832 0.97753 1.00187 1.21238 1.29692 1.14494 0.91607 0.93826 1.25442 0.95113 0.95563 1.00854 1.69925 1.38090 1.21891 1.23713 0.85767 0.78514 0.78821 0.79665 1.20395 1.20709 1.20183 1.21117 0.96560 0.94644 0.83310 1.45239 1.55849 1.33245 1.03784 1.15771 0.80085 0.82362 0.80695 1.90838 1.45259 1.29736 1.86390 1.47696 1.54198 1.30860 1.04430 1.22585 0.93371 0.87121 1.00399 1.22892 0.96862 1.03628 0.91822 1.22717 0.96538 0.97013 0.94599 0.87296 1.22081 1.01003 0.93169 0.98266 1.22312 1.01778 0.97924 0.93542 1.22721 0.99402 0.96799 0.97948 1.22478 0.98809 0.95413 0.79355 0.91447 0.94728 0.91938 0.96412 0.96460 0.91692 0.94834 0.92965 0.94869 0.94851 0.76007 0.90912 0.90313 0.86900 0.90512 0.90181 0.89574 0.90742 0.90962 0.92807 0.93973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.22 8.03 71.98 0.58 -4.64 16 2 C 0.05 2.50 0.50 -52.93 -0.03 2.47 16 3 C -0.12 -5.32 8.11 71.98 0.58 -4.73 16 4 C -0.53 -28.86 8.01 25.60 0.20 -28.65 16 5 H 0.04 2.43 7.75 -2.91 -0.02 2.40 16 6 C 0.03 1.62 5.13 84.65 0.43 2.06 16 7 N -0.90 -48.24 9.45 21.45 0.20 -48.04 16 8 Si 0.95 43.18 29.54 68.60 2.03 45.21 16 9 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 10 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 11 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 12 C 0.17 7.67 4.50 86.38 0.39 8.06 16 13 N -0.73 -27.74 4.86 -478.51 -2.33 -30.07 16 14 C 0.71 27.54 8.28 179.06 1.48 29.02 16 15 O -0.64 -30.32 16.33 -4.00 -0.07 -30.38 16 16 N -0.63 -18.23 2.97 -801.22 -2.38 -20.60 16 17 C 0.09 1.73 6.58 86.85 0.57 2.30 16 18 C -0.11 -1.51 6.32 31.89 0.20 -1.30 16 19 C -0.09 -1.28 3.84 -9.23 -0.04 -1.32 16 20 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 21 C -0.11 -1.23 6.35 31.17 0.20 -1.03 16 22 C -0.12 -1.87 6.84 31.60 0.22 -1.66 16 23 C -0.13 -3.23 5.88 31.79 0.19 -3.04 16 24 C 0.14 3.46 3.67 46.25 0.17 3.63 16 25 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 26 H 0.03 1.32 6.71 -2.39 -0.02 1.31 16 27 H 0.06 3.10 6.25 -2.39 -0.01 3.08 16 28 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.06 3.26 6.10 -2.39 -0.01 3.24 16 31 H 0.03 1.29 6.86 -2.39 -0.02 1.27 16 32 H 0.26 13.46 8.31 -92.71 -0.77 12.69 16 33 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.40 13.51 4.61 -92.71 -0.43 13.08 16 36 H 0.07 1.45 7.26 -2.38 -0.02 1.43 16 37 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.08 1.06 7.62 -2.39 -0.02 1.05 16 40 H 0.08 0.79 7.37 -2.39 -0.02 0.77 16 41 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 43 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 44 H 0.05 1.47 8.09 -2.39 -0.02 1.45 16 45 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 Total: -1.00 -65.68 341.17 3.15 -62.54 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: 0.53 Total: 20.19 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: 5.15 Total: 1.16 kcal Atomic # 7 Polarization: -94.21 SS G_CDS: -4.50 Total: -98.71 kcal Atomic # 8 Polarization: -30.32 SS G_CDS: -0.07 Total: -30.38 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -65.68 3.15 -62.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335591783.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.257 kcal (2) G-P(sol) polarization free energy of solvation -65.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds