Wall clock time and date at job start Tue Mar 31 2020 02:12:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.46949 * 2 1 4 4 C 1.50701 * 109.47028 * 240.00096 * 2 1 3 5 5 H 1.07995 * 119.99979 * 239.99513 * 4 2 1 6 6 C 1.37880 * 119.99832 * 59.99979 * 4 2 1 7 7 N 1.31512 * 120.00279 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99796 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47385 * 59.99647 * 8 6 4 10 10 H 1.48498 * 109.46762 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.46911 * 299.99538 * 8 6 4 12 12 C 1.53000 * 109.47284 * 119.99899 * 2 1 3 13 13 N 1.46493 * 109.47299 * 300.00121 * 12 2 1 14 14 C 1.34782 * 120.00369 * 179.97438 * 13 12 2 15 15 O 1.21586 * 119.99482 * 0.02562 * 14 13 12 16 16 N 1.34770 * 120.00179 * 180.02562 * 14 13 12 17 17 C 1.48331 * 128.20133 * 0.02702 * 16 14 13 18 18 C 1.54447 * 104.32707 * 138.16641 * 17 16 14 19 19 H 1.08998 * 112.00394 * 263.59465 * 18 17 16 20 20 C 1.54286 * 108.73041 * 138.30239 * 18 17 16 21 21 C 1.55176 * 104.07559 * 223.08439 * 20 18 17 22 22 C 1.55046 * 102.03931 * 39.96526 * 21 20 18 23 23 C 1.54282 * 104.10582 * 320.02886 * 22 21 20 24 24 H 1.09007 * 111.97358 * 261.24007 * 23 22 21 25 25 C 1.48341 * 128.19498 * 180.02562 * 16 14 13 26 26 H 1.08998 * 109.46959 * 299.99449 * 1 2 3 27 27 H 1.08999 * 109.47054 * 60.00015 * 1 2 3 28 28 H 1.09003 * 109.46984 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47422 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.47544 * 300.00324 * 3 2 1 31 31 H 1.09004 * 109.47407 * 60.00092 * 3 2 1 32 32 H 0.96993 * 120.00599 * 180.02562 * 7 6 4 33 33 H 1.08996 * 109.47238 * 179.97438 * 12 2 1 34 34 H 1.09003 * 109.46941 * 60.00181 * 12 2 1 35 35 H 0.97001 * 120.00475 * 0.02562 * 13 12 2 36 36 H 1.09001 * 110.45963 * 256.87755 * 17 16 14 37 37 H 1.09000 * 110.46238 * 19.45379 * 17 16 14 38 38 H 1.09002 * 110.52525 * 341.60826 * 20 18 17 39 39 H 1.08995 * 110.52878 * 104.36355 * 20 18 17 40 40 H 1.09003 * 110.84209 * 281.83404 * 21 20 18 41 41 H 1.09000 * 111.03702 * 158.18751 * 21 20 18 42 42 H 1.09002 * 110.52855 * 201.33040 * 22 21 20 43 43 H 1.09005 * 110.52515 * 78.71849 * 22 21 20 44 44 H 1.09000 * 110.46222 * 103.11956 * 25 16 14 45 45 H 1.08999 * 110.56911 * 340.59424 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3213 -1.1203 -4.0080 9 1 1.8258 -2.5201 -4.0078 10 1 1.8268 -0.4197 -5.2204 11 1 3.8062 -1.1208 -4.0082 12 6 2.0401 -0.7212 1.2492 13 7 1.5518 -0.0307 2.4454 14 6 1.8770 -0.4914 3.6695 15 8 2.5760 -1.4799 3.7810 16 7 1.4273 0.1436 4.7699 17 6 0.5715 1.3527 4.8459 18 6 -0.4309 1.0409 5.9789 19 1 -1.3748 0.6549 5.5942 20 6 -0.6110 2.3063 6.8431 21 6 -0.5890 1.7741 8.3006 22 6 0.5260 0.6987 8.2354 23 6 0.3012 0.0060 6.8753 24 1 -0.2488 -0.9293 6.9799 25 6 1.6711 -0.2012 6.1920 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4426 0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 0.7080 1.1609 -3.4843 33 1 3.1300 -0.7216 1.2490 34 1 1.6767 -1.7489 1.2492 35 1 0.9938 0.7578 2.3565 36 1 1.1703 2.2282 5.0972 37 1 0.0456 1.5072 3.9038 38 1 0.2129 3.0011 6.6799 39 1 -1.5653 2.7855 6.6249 40 1 -1.5468 1.3256 8.5642 41 1 -0.3254 2.5655 9.0022 42 1 0.4161 -0.0159 9.0511 43 1 1.5102 1.1662 8.2681 44 1 2.4171 0.4661 6.6234 45 1 1.9903 -1.2393 6.2850 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335591836.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:12:02 Heat of formation + Delta-G solvation = -38.691741 kcal Electronic energy + Delta-G solvation = -22797.834849 eV Core-core repulsion = 19621.634413 eV Total energy + Delta-G solvation = -3176.200436 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.37798 -38.65493 -36.33230 -34.61650 -33.18711 -30.99057 -30.53663 -29.08452 -25.91120 -25.70026 -25.46450 -24.89731 -23.25775 -21.16275 -19.57863 -19.31353 -18.75976 -17.81814 -16.28628 -15.82590 -15.61586 -15.48997 -14.70996 -14.59894 -14.19899 -13.71243 -13.45573 -13.32486 -12.94801 -12.50461 -12.45773 -12.18442 -12.07608 -11.40837 -11.35472 -11.33062 -11.15842 -11.01090 -10.97404 -10.82629 -10.76530 -10.74481 -10.70446 -10.35674 -10.18195 -9.69713 -9.60332 -9.27785 -8.77411 -8.69267 -8.37862 -8.09597 -5.99856 -4.09772 2.94477 3.31997 3.35903 3.40121 3.64323 4.12234 4.23363 4.40411 4.49668 4.60497 4.96830 5.02854 5.07310 5.19451 5.21974 5.26028 5.26783 5.41406 5.55719 5.59865 5.68569 5.74896 5.78040 5.91121 5.93924 6.09468 6.10267 6.23011 6.38807 6.39820 6.53857 6.83331 6.85148 6.96418 7.05870 7.14161 7.38441 7.50360 7.58340 7.71953 8.03397 8.14892 8.40825 8.49033 8.89904 9.09192 9.55770 11.01604 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.038139 B = 0.003532 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.987083 B = 7925.992814 C = 8376.528896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.056 3.944 3 C -0.129 4.129 4 C -0.506 4.506 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.894 3.106 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.150 3.850 13 N -0.731 5.731 14 C 0.721 3.279 15 O -0.598 6.598 16 N -0.649 5.649 17 C 0.106 3.894 18 C -0.103 4.103 19 H 0.088 0.912 20 C -0.118 4.118 21 C -0.124 4.124 22 C -0.119 4.119 23 C -0.105 4.105 24 H 0.087 0.913 25 C 0.129 3.871 26 H 0.004 0.996 27 H 0.085 0.915 28 H 0.026 0.974 29 H 0.026 0.974 30 H 0.085 0.915 31 H 0.004 0.996 32 H 0.260 0.740 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.393 0.607 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.070 0.930 44 H 0.067 0.933 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.596 4.945 19.269 20.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.056 3.944 3 C -0.187 4.187 4 C -0.545 4.545 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.722 3.278 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.203 1.203 12 C 0.027 3.973 13 N -0.386 5.386 14 C 0.423 3.577 15 O -0.477 6.477 16 N -0.388 5.388 17 C -0.018 4.018 18 C -0.122 4.122 19 H 0.106 0.894 20 C -0.156 4.156 21 C -0.162 4.162 22 C -0.156 4.156 23 C -0.125 4.125 24 H 0.105 0.895 25 C 0.005 3.995 26 H 0.023 0.977 27 H 0.104 0.896 28 H 0.045 0.955 29 H 0.045 0.955 30 H 0.104 0.896 31 H 0.023 0.977 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.228 0.772 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.084 0.916 43 H 0.089 0.911 44 H 0.085 0.915 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.080 4.249 19.015 19.907 hybrid contribution 0.020 -0.056 -0.928 0.930 sum -4.061 4.193 18.087 19.005 Atomic orbital electron populations 1.21812 0.97796 0.99139 0.99903 1.18356 0.92783 0.92772 0.90519 1.21812 0.98576 0.98357 0.99916 1.20959 1.31494 1.12118 0.89881 0.92438 1.24875 0.94864 0.94926 0.98815 1.69792 1.36659 1.22788 1.23293 0.86625 0.79242 0.79795 0.82147 1.20275 1.21352 1.20281 1.21593 0.97883 0.95424 0.82375 1.45511 1.55573 1.33127 1.04356 1.15519 0.80084 0.82282 0.79781 1.90879 1.43493 1.27795 1.85574 1.48212 1.55011 1.30475 1.05082 1.22571 0.91847 0.88222 0.99125 1.22823 0.98607 0.95503 0.95281 0.89360 1.22538 1.02060 0.96460 0.94531 1.22605 0.98863 0.98113 0.96580 1.22527 0.99185 0.97695 0.96238 1.22873 0.96274 0.98770 0.94540 0.89470 1.22350 0.95711 1.01818 0.79622 0.97687 0.89635 0.95458 0.95455 0.89636 0.97668 0.92980 0.92967 0.92992 0.77195 0.91086 0.90771 0.91056 0.91440 0.91458 0.91533 0.91584 0.91118 0.91528 0.90205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 2 C 0.06 1.34 0.50 -155.66 -0.08 1.26 16 3 C -0.13 -2.97 8.08 37.16 0.30 -2.67 16 4 C -0.51 -13.49 8.01 -34.44 -0.28 -13.76 16 5 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 6 C 0.07 1.76 5.15 -17.82 -0.09 1.67 16 7 N -0.89 -23.80 9.35 55.43 0.52 -23.28 16 8 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 9 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 C 0.15 3.36 4.50 -4.05 -0.02 3.34 16 13 N -0.73 -14.13 4.94 -65.23 -0.32 -14.45 16 14 C 0.72 14.04 8.58 -86.92 -0.75 13.29 16 15 O -0.60 -13.93 16.63 5.29 0.09 -13.84 16 16 N -0.65 -9.65 3.31 -174.61 -0.58 -10.23 16 17 C 0.11 1.19 6.46 -2.27 -0.01 1.18 16 18 C -0.10 -0.94 3.97 -87.99 -0.35 -1.29 16 19 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 20 C -0.12 -0.85 6.35 -24.91 -0.16 -1.01 16 21 C -0.12 -0.81 6.94 -24.50 -0.17 -0.98 16 22 C -0.12 -0.85 6.34 -24.98 -0.16 -1.01 16 23 C -0.11 -0.98 3.97 -87.97 -0.35 -1.33 16 24 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 25 C 0.13 1.56 6.58 -2.25 -0.01 1.54 16 26 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 27 H 0.08 2.16 6.07 -51.93 -0.32 1.84 16 28 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.08 2.16 6.07 -51.93 -0.32 1.84 16 31 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 32 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 33 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 34 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.39 6.91 4.57 -40.82 -0.19 6.72 16 36 H 0.07 0.72 7.20 -51.93 -0.37 0.34 16 37 H 0.07 0.85 6.84 -51.93 -0.36 0.49 16 38 H 0.07 0.50 7.19 -51.93 -0.37 0.13 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.07 0.50 7.19 -51.93 -0.37 0.13 16 44 H 0.07 0.72 7.20 -51.93 -0.37 0.35 16 45 H 0.08 1.08 7.88 -51.93 -0.41 0.67 16 LS Contribution 340.01 15.07 5.12 5.12 Total: -1.00 -29.75 340.01 -9.57 -39.32 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -7.56 Total: 3.87 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: -1.82 Total: -2.43 kcal Atomic # 7 Polarization: -47.58 SS G_CDS: -0.38 Total: -47.96 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: 0.09 Total: -13.84 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.75 -9.57 -39.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335591836.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.633 kcal (2) G-P(sol) polarization free energy of solvation -29.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds