Wall clock time and date at job start Tue Mar 31 2020 02:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.46949 * 2 1 4 4 C 1.50701 * 109.47028 * 240.00096 * 2 1 3 5 5 H 1.07995 * 119.99979 * 239.99513 * 4 2 1 6 6 C 1.37880 * 119.99832 * 59.99979 * 4 2 1 7 7 N 1.31512 * 120.00279 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99796 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47385 * 59.99647 * 8 6 4 10 10 H 1.48498 * 109.46762 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.46911 * 299.99538 * 8 6 4 12 12 C 1.53000 * 109.47284 * 119.99899 * 2 1 3 13 13 N 1.46493 * 109.47299 * 300.00121 * 12 2 1 14 14 C 1.34782 * 120.00369 * 179.97438 * 13 12 2 15 15 O 1.21586 * 119.99482 * 0.02562 * 14 13 12 16 16 N 1.34770 * 120.00179 * 180.02562 * 14 13 12 17 17 C 1.48331 * 128.20133 * 0.02702 * 16 14 13 18 18 C 1.54447 * 104.32707 * 138.16641 * 17 16 14 19 19 H 1.08998 * 112.00394 * 263.59465 * 18 17 16 20 20 C 1.54286 * 108.73041 * 138.30239 * 18 17 16 21 21 C 1.55176 * 104.07559 * 223.08439 * 20 18 17 22 22 C 1.55046 * 102.03931 * 39.96526 * 21 20 18 23 23 C 1.54282 * 104.10582 * 320.02886 * 22 21 20 24 24 H 1.09007 * 111.97358 * 261.24007 * 23 22 21 25 25 C 1.48341 * 128.19498 * 180.02562 * 16 14 13 26 26 H 1.08998 * 109.46959 * 299.99449 * 1 2 3 27 27 H 1.08999 * 109.47054 * 60.00015 * 1 2 3 28 28 H 1.09003 * 109.46984 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47422 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.47544 * 300.00324 * 3 2 1 31 31 H 1.09004 * 109.47407 * 60.00092 * 3 2 1 32 32 H 0.96993 * 120.00599 * 180.02562 * 7 6 4 33 33 H 1.08996 * 109.47238 * 179.97438 * 12 2 1 34 34 H 1.09003 * 109.46941 * 60.00181 * 12 2 1 35 35 H 0.97001 * 120.00475 * 0.02562 * 13 12 2 36 36 H 1.09001 * 110.45963 * 256.87755 * 17 16 14 37 37 H 1.09000 * 110.46238 * 19.45379 * 17 16 14 38 38 H 1.09002 * 110.52525 * 341.60826 * 20 18 17 39 39 H 1.08995 * 110.52878 * 104.36355 * 20 18 17 40 40 H 1.09003 * 110.84209 * 281.83404 * 21 20 18 41 41 H 1.09000 * 111.03702 * 158.18751 * 21 20 18 42 42 H 1.09002 * 110.52855 * 201.33040 * 22 21 20 43 43 H 1.09005 * 110.52515 * 78.71849 * 22 21 20 44 44 H 1.09000 * 110.46222 * 103.11956 * 25 16 14 45 45 H 1.08999 * 110.56911 * 340.59424 * 25 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3213 -1.1203 -4.0080 9 1 1.8258 -2.5201 -4.0078 10 1 1.8268 -0.4197 -5.2204 11 1 3.8062 -1.1208 -4.0082 12 6 2.0401 -0.7212 1.2492 13 7 1.5518 -0.0307 2.4454 14 6 1.8770 -0.4914 3.6695 15 8 2.5760 -1.4799 3.7810 16 7 1.4273 0.1436 4.7699 17 6 0.5715 1.3527 4.8459 18 6 -0.4309 1.0409 5.9789 19 1 -1.3748 0.6549 5.5942 20 6 -0.6110 2.3063 6.8431 21 6 -0.5890 1.7741 8.3006 22 6 0.5260 0.6987 8.2354 23 6 0.3012 0.0060 6.8753 24 1 -0.2488 -0.9293 6.9799 25 6 1.6711 -0.2012 6.1920 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.1300 1.4426 0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 0.7080 1.1609 -3.4843 33 1 3.1300 -0.7216 1.2490 34 1 1.6767 -1.7489 1.2492 35 1 0.9938 0.7578 2.3565 36 1 1.1703 2.2282 5.0972 37 1 0.0456 1.5072 3.9038 38 1 0.2129 3.0011 6.6799 39 1 -1.5653 2.7855 6.6249 40 1 -1.5468 1.3256 8.5642 41 1 -0.3254 2.5655 9.0022 42 1 0.4161 -0.0159 9.0511 43 1 1.5102 1.1662 8.2681 44 1 2.4171 0.4661 6.6234 45 1 1.9903 -1.2393 6.2850 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335591836.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:12:01 Heat of formation + Delta-G solvation = -55.068321 kcal Electronic energy + Delta-G solvation = -22798.544991 eV Core-core repulsion = 19621.634413 eV Total energy + Delta-G solvation = -3176.910578 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.50104 -39.92025 -38.11764 -35.68106 -34.95190 -32.74405 -31.40870 -30.08415 -27.58585 -27.48141 -26.85684 -26.30037 -24.47496 -21.80159 -20.99042 -20.65707 -20.03476 -19.11608 -17.83755 -17.16352 -16.95123 -16.72475 -16.48021 -15.69896 -15.29512 -15.24698 -14.74900 -14.73266 -14.27677 -14.03539 -13.84581 -13.38862 -13.20389 -13.09439 -12.96547 -12.68590 -12.62655 -12.26604 -12.18976 -12.10843 -11.92725 -11.72198 -11.53434 -11.51212 -11.50562 -11.47994 -11.29440 -11.07478 -10.72919 -10.40807 -10.18364 -9.51222 -8.02619 -6.18546 1.44662 1.45182 1.51865 1.63474 2.13616 2.45883 3.07920 3.20832 3.45619 3.57065 3.80232 4.18638 4.31673 4.35694 4.39678 4.43377 4.49906 4.52827 4.58813 4.67290 4.68556 4.85401 4.92603 4.93259 4.98832 4.99625 5.03139 5.08862 5.17441 5.20160 5.20610 5.30077 5.35851 5.39996 5.49350 5.56330 5.59773 5.65266 5.66415 6.11058 6.12847 6.20206 6.42684 6.84894 7.02133 7.49009 7.57584 8.96430 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.038139 B = 0.003532 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.987083 B = 7925.992814 C = 8376.528896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.053 3.947 3 C -0.118 4.118 4 C -0.532 4.532 5 H 0.044 0.956 6 C 0.030 3.970 7 N -0.899 5.899 8 Si 0.946 3.054 9 H -0.277 1.277 10 H -0.281 1.281 11 H -0.277 1.277 12 C 0.168 3.832 13 N -0.724 5.724 14 C 0.716 3.284 15 O -0.644 6.644 16 N -0.648 5.648 17 C 0.100 3.900 18 C -0.099 4.099 19 H 0.087 0.913 20 C -0.113 4.113 21 C -0.120 4.120 22 C -0.114 4.114 23 C -0.100 4.100 24 H 0.083 0.917 25 C 0.123 3.877 26 H 0.033 0.967 27 H 0.065 0.935 28 H 0.017 0.983 29 H 0.017 0.983 30 H 0.064 0.936 31 H 0.033 0.967 32 H 0.261 0.739 33 H 0.034 0.966 34 H 0.034 0.966 35 H 0.403 0.597 36 H 0.089 0.911 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.075 0.925 44 H 0.083 0.917 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.495 6.402 20.839 22.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.052 3.948 3 C -0.175 4.175 4 C -0.571 4.571 5 H 0.063 0.937 6 C -0.170 4.170 7 N -0.537 5.537 8 Si 0.773 3.227 9 H -0.203 1.203 10 H -0.206 1.206 11 H -0.203 1.203 12 C 0.043 3.957 13 N -0.380 5.380 14 C 0.418 3.582 15 O -0.527 6.527 16 N -0.385 5.385 17 C -0.022 4.022 18 C -0.118 4.118 19 H 0.105 0.895 20 C -0.151 4.151 21 C -0.157 4.157 22 C -0.152 4.152 23 C -0.119 4.119 24 H 0.101 0.899 25 C 0.000 4.000 26 H 0.052 0.948 27 H 0.083 0.917 28 H 0.036 0.964 29 H 0.036 0.964 30 H 0.083 0.917 31 H 0.052 0.948 32 H 0.071 0.929 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.240 0.760 36 H 0.108 0.892 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.098 0.902 42 H 0.093 0.907 43 H 0.093 0.907 44 H 0.102 0.898 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.016 5.754 20.630 21.997 hybrid contribution 0.294 -0.499 -1.352 1.471 sum -4.722 5.255 19.278 20.532 Atomic orbital electron populations 1.21643 0.97070 0.98581 1.00225 1.18350 0.93285 0.93066 0.90069 1.21644 0.97880 0.97773 1.00244 1.21240 1.31967 1.12307 0.91560 0.93734 1.25447 0.95067 0.95583 1.00921 1.69889 1.36820 1.23242 1.23748 0.85799 0.78623 0.78805 0.79478 1.20272 1.20648 1.20272 1.21151 0.96657 0.94648 0.83226 1.45212 1.55792 1.33257 1.03727 1.15659 0.79914 0.82081 0.80574 1.90840 1.45572 1.29943 1.86363 1.48269 1.54362 1.31030 1.04877 1.22897 0.92039 0.87151 1.00128 1.22828 0.97735 0.96552 0.94694 0.89493 1.22527 1.02816 0.95379 0.94389 1.22599 0.98671 0.98100 0.96347 1.22511 0.99819 0.97971 0.94878 1.22853 0.94349 0.99078 0.95651 0.89881 1.22626 0.97998 1.01056 0.78318 0.94845 0.91666 0.96408 0.96368 0.91670 0.94813 0.92930 0.94722 0.94803 0.76006 0.89248 0.90845 0.90513 0.90507 0.91116 0.90210 0.90745 0.90688 0.89847 0.92313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.35 8.08 71.98 0.58 -4.77 16 2 C 0.05 2.53 0.50 -52.93 -0.03 2.51 16 3 C -0.12 -5.36 8.08 71.98 0.58 -4.78 16 4 C -0.53 -28.80 8.01 25.60 0.21 -28.60 16 5 H 0.04 2.46 7.74 -2.91 -0.02 2.44 16 6 C 0.03 1.58 5.15 84.66 0.44 2.02 16 7 N -0.90 -48.18 9.35 21.45 0.20 -47.98 16 8 Si 0.95 43.03 29.54 68.60 2.03 45.06 16 9 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 10 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 11 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 12 C 0.17 7.63 4.50 86.38 0.39 8.01 16 13 N -0.72 -27.74 4.94 -478.55 -2.36 -30.10 16 14 C 0.72 27.89 8.58 179.05 1.54 29.43 16 15 O -0.64 -30.77 16.63 -3.99 -0.07 -30.83 16 16 N -0.65 -18.64 3.31 -824.61 -2.73 -21.37 16 17 C 0.10 2.02 6.46 86.52 0.56 2.58 16 18 C -0.10 -1.56 3.97 -9.09 -0.04 -1.59 16 19 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 20 C -0.11 -1.23 6.35 31.78 0.20 -1.03 16 21 C -0.12 -1.13 6.94 32.04 0.22 -0.91 16 22 C -0.11 -1.31 6.34 31.73 0.20 -1.11 16 23 C -0.10 -1.66 3.97 -9.08 -0.04 -1.70 16 24 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 25 C 0.12 2.84 6.58 86.53 0.57 3.41 16 26 H 0.03 1.28 6.86 -2.39 -0.02 1.27 16 27 H 0.06 3.26 6.07 -2.39 -0.01 3.25 16 28 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.06 3.26 6.07 -2.39 -0.01 3.24 16 31 H 0.03 1.30 6.86 -2.38 -0.02 1.28 16 32 H 0.26 13.48 8.31 -92.71 -0.77 12.70 16 33 H 0.03 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.03 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.40 13.55 4.57 -92.71 -0.42 13.13 16 36 H 0.09 1.52 7.20 -2.39 -0.02 1.50 16 37 H 0.07 1.50 6.84 -2.39 -0.02 1.48 16 38 H 0.08 0.78 7.19 -2.39 -0.02 0.77 16 39 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.07 0.82 7.19 -2.38 -0.02 0.81 16 44 H 0.08 1.65 7.20 -2.39 -0.02 1.64 16 45 H 0.06 1.60 7.88 -2.39 -0.02 1.58 16 Total: -1.00 -64.64 340.01 3.00 -61.65 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: 0.54 Total: 20.11 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: 5.38 Total: 3.46 kcal Atomic # 7 Polarization: -94.55 SS G_CDS: -4.89 Total: -99.44 kcal Atomic # 8 Polarization: -30.77 SS G_CDS: -0.07 Total: -30.83 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -64.64 3.00 -61.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335591836.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.577 kcal (2) G-P(sol) polarization free energy of solvation -64.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds