Wall clock time and date at job start Tue Mar 31 2020 02:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47148 * 2 1 4 4 H 1.08999 * 110.01242 * 306.38790 * 3 2 1 5 5 C 1.54266 * 110.07507 * 67.80729 * 3 2 1 6 6 C 1.54892 * 104.19551 * 142.91537 * 5 3 2 7 7 C 1.54894 * 102.74557 * 322.05746 * 6 5 3 8 8 C 1.53881 * 110.02930 * 184.99889 * 3 2 1 9 9 H 1.09000 * 110.03354 * 359.97438 * 8 3 2 10 10 C 1.50700 * 110.02945 * 121.38052 * 8 3 2 11 11 O 1.21277 * 120.00332 * 359.97438 * 10 8 3 12 12 N 1.34772 * 119.99753 * 179.97438 * 10 8 3 13 13 C 1.46966 * 120.59289 * 179.97438 * 12 10 8 14 14 C 1.53371 * 108.77348 * 124.83770 * 13 12 10 15 15 N 1.46962 * 108.63810 * 49.33901 * 14 13 12 16 16 C 1.36941 * 120.59459 * 124.79615 * 15 14 13 17 17 H 1.07997 * 119.99598 * 208.15842 * 16 15 14 18 18 C 1.38815 * 119.99989 * 28.15611 * 16 15 14 19 19 N 1.31619 * 119.99979 * 17.56419 * 18 16 15 20 20 Si 1.86805 * 119.99768 * 197.56497 * 18 16 15 21 21 H 1.48503 * 109.46961 * 59.99970 * 20 18 16 22 22 H 1.48501 * 109.46934 * 179.97438 * 20 18 16 23 23 H 1.48492 * 109.46893 * 300.00010 * 20 18 16 24 24 C 1.46964 * 118.81269 * 304.76977 * 15 14 13 25 25 C 1.46996 * 120.61789 * 359.75349 * 12 10 8 26 26 H 1.09001 * 109.46989 * 300.00278 * 1 2 3 27 27 H 1.08995 * 109.46988 * 60.00608 * 1 2 3 28 28 H 1.09004 * 109.47111 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47565 * 239.99337 * 2 1 3 30 30 H 1.09006 * 109.46893 * 119.99853 * 2 1 3 31 31 H 1.08992 * 110.48454 * 261.59855 * 5 3 2 32 32 H 1.09003 * 110.48369 * 24.10295 * 5 3 2 33 33 H 1.09002 * 110.75170 * 80.36894 * 6 5 3 34 34 H 1.08994 * 110.75175 * 203.55950 * 6 5 3 35 35 H 1.09001 * 110.48539 * 279.25963 * 7 6 5 36 36 H 1.09000 * 110.47660 * 156.62118 * 7 6 5 37 37 H 1.08991 * 109.60902 * 5.00345 * 13 12 10 38 38 H 1.08998 * 109.60808 * 244.66556 * 13 12 10 39 39 H 1.09009 * 109.60728 * 169.08248 * 14 13 12 40 40 H 1.09005 * 109.60974 * 289.41621 * 14 13 12 41 41 H 0.96998 * 119.99864 * 180.02562 * 19 18 16 42 42 H 1.08991 * 109.61001 * 174.97399 * 24 15 14 43 43 H 1.08998 * 109.60793 * 295.48876 * 24 15 14 44 44 H 1.09002 * 109.46641 * 115.41854 * 25 12 10 45 45 H 1.09010 * 109.75608 * 355.07856 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5915 1.9967 -0.8245 5 6 1.7005 2.1242 1.3416 6 6 2.9289 3.0216 1.6332 7 6 4.1124 2.1506 1.1435 8 6 3.5736 1.4593 -0.1260 9 1 3.9545 0.4399 -0.1867 10 6 3.9824 2.2370 -1.3504 11 8 3.1367 2.7349 -2.0629 12 7 5.2879 2.3791 -1.6536 13 6 5.7012 3.1343 -2.8447 14 6 6.6772 4.2370 -2.4159 15 7 7.7132 3.6408 -1.5609 16 6 9.0395 3.7835 -1.8705 17 1 9.7496 3.0297 -1.5641 18 6 9.4711 4.8971 -2.5780 19 7 8.7064 5.9657 -2.6538 20 14 11.1373 4.8790 -3.4224 21 1 11.1733 3.7821 -4.4229 22 1 11.3603 6.1787 -4.1053 23 1 12.2025 4.6615 -2.4110 24 6 7.3004 2.8891 -0.3674 25 6 6.3244 1.7859 -0.7965 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 0.7998 2.7301 1.2444 32 1 1.5749 1.3789 2.1271 33 1 2.8720 3.9505 1.0657 34 1 3.0124 3.2270 2.7004 35 1 4.3786 1.4099 1.8975 36 1 4.9717 2.7761 0.9017 37 1 4.8263 3.5828 -3.3152 38 1 6.1929 2.4645 -3.5500 39 1 7.1406 4.6787 -3.2982 40 1 6.1395 5.0061 -1.8613 41 1 9.0079 6.7437 -3.1485 42 1 8.1753 2.4406 0.1031 43 1 6.8076 3.5607 0.3355 44 1 6.8614 1.0185 -1.3541 45 1 5.8632 1.3418 0.0858 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336226543.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:40:35 Heat of formation + Delta-G solvation = -27.199122 kcal Electronic energy + Delta-G solvation = -23406.598824 eV Core-core repulsion = 20230.896745 eV Total energy + Delta-G solvation = -3175.702079 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.32743 -37.80797 -36.55449 -34.01081 -33.10117 -31.18896 -30.70575 -28.92471 -27.53618 -26.85257 -23.91274 -23.12485 -22.54867 -21.26659 -20.54403 -19.59164 -18.30489 -16.88477 -16.29409 -15.83764 -15.41518 -14.85757 -14.71965 -14.46449 -14.14067 -13.72470 -13.49817 -13.40125 -13.14331 -13.05046 -12.78738 -12.33064 -12.04076 -11.80653 -11.52640 -11.25239 -11.13015 -10.96094 -10.83360 -10.76749 -10.71465 -10.64674 -10.55495 -10.45553 -10.39006 -10.20424 -9.94648 -9.84038 -9.19589 -8.58705 -8.20412 -6.71826 -5.85373 -3.30484 3.04764 3.34698 3.41122 3.41418 3.49916 4.43108 4.50599 4.61951 4.67046 5.03274 5.13065 5.13650 5.25836 5.29920 5.32632 5.44496 5.61027 5.63086 5.64963 5.69418 5.74887 5.79630 5.81151 5.87024 5.92429 5.94914 6.03260 6.09261 6.14184 6.18564 6.27123 6.30759 6.37236 6.39853 6.51509 6.56120 6.71814 6.90337 7.26928 7.54748 7.71463 7.97757 8.35571 8.64077 9.11351 9.74309 10.31019 11.22005 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.037355 B = 0.004075 C = 0.003987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.392210 B = 6870.215161 C = 7020.816096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.115 4.115 3 C -0.087 4.087 4 H 0.098 0.902 5 C -0.115 4.115 6 C -0.125 4.125 7 C -0.122 4.122 8 C -0.108 4.108 9 H 0.093 0.907 10 C 0.515 3.485 11 O -0.555 6.555 12 N -0.596 5.596 13 C 0.086 3.914 14 C 0.159 3.841 15 N -0.590 5.590 16 C -0.259 4.259 17 H 0.067 0.933 18 C 0.005 3.995 19 N -0.900 5.900 20 Si 0.905 3.095 21 H -0.283 1.283 22 H -0.290 1.290 23 H -0.282 1.282 24 C 0.131 3.869 25 C 0.083 3.917 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.050 0.950 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.058 0.942 39 H 0.099 0.901 40 H 0.022 0.978 41 H 0.256 0.744 42 H 0.066 0.934 43 H 0.024 0.976 44 H 0.063 0.937 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.598 -10.709 7.730 17.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.152 4.152 3 C -0.106 4.106 4 H 0.116 0.884 5 C -0.152 4.152 6 C -0.162 4.162 7 C -0.160 4.160 8 C -0.129 4.129 9 H 0.111 0.889 10 C 0.303 3.697 11 O -0.435 6.435 12 N -0.327 5.327 13 C -0.037 4.037 14 C 0.033 3.967 15 N -0.313 5.313 16 C -0.389 4.389 17 H 0.085 0.915 18 C -0.194 4.194 19 N -0.544 5.544 20 Si 0.734 3.266 21 H -0.209 1.209 22 H -0.216 1.216 23 H -0.208 1.208 24 C 0.004 3.996 25 C -0.042 4.042 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.100 0.900 37 H 0.097 0.903 38 H 0.076 0.924 39 H 0.117 0.883 40 H 0.041 0.959 41 H 0.066 0.934 42 H 0.085 0.915 43 H 0.041 0.959 44 H 0.081 0.919 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.963 -10.268 7.254 17.354 hybrid contribution 1.037 0.025 -0.460 1.135 sum -10.926 -10.243 6.794 16.445 Atomic orbital electron populations 1.21767 0.95917 1.01164 1.01961 1.21620 0.95924 0.96125 1.01558 1.21856 0.92984 0.96427 0.99327 0.88435 1.22416 0.97960 0.98328 0.96542 1.22495 0.94483 0.98570 1.00693 1.22569 0.98933 0.99136 0.95349 1.21938 0.97274 0.99807 0.93892 0.88906 1.20484 0.82177 0.80647 0.86426 1.90595 1.50145 1.50251 1.52493 1.48019 1.05024 1.52832 1.26869 1.22481 0.99336 0.95588 0.86311 1.21172 0.87884 0.90857 0.96800 1.43975 1.02663 1.61675 1.22986 1.19145 0.83911 1.02393 1.33426 0.91530 1.25074 0.97907 0.94517 1.01937 1.70016 1.37957 1.02956 1.43453 0.86344 0.83707 0.76835 0.79712 1.20944 1.21582 1.20826 1.21292 0.95667 0.92433 0.90226 1.22516 0.90296 0.97329 0.94041 0.92698 0.92661 0.93123 0.92213 0.92178 0.91857 0.91737 0.91385 0.91505 0.90779 0.90047 0.90256 0.92361 0.88323 0.95946 0.93389 0.91544 0.95864 0.91861 0.90259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.77 37.16 0.36 -1.01 16 2 C -0.11 -1.17 5.06 -26.73 -0.14 -1.30 16 3 C -0.09 -1.07 2.52 -89.50 -0.23 -1.30 16 4 H 0.10 1.48 6.39 -51.93 -0.33 1.15 16 5 C -0.11 -1.23 5.54 -25.07 -0.14 -1.37 16 6 C -0.12 -1.46 6.91 -24.73 -0.17 -1.64 16 7 C -0.12 -1.48 4.88 -25.07 -0.12 -1.60 16 8 C -0.11 -1.43 2.07 -90.65 -0.19 -1.62 16 9 H 0.09 1.09 7.40 -51.93 -0.38 0.71 16 10 C 0.51 9.08 7.01 -10.99 -0.08 9.01 16 11 O -0.56 -11.52 14.61 5.56 0.08 -11.44 16 12 N -0.60 -10.92 2.92 -172.43 -0.50 -11.43 16 13 C 0.09 1.77 6.59 -3.60 -0.02 1.75 16 14 C 0.16 3.82 5.52 -3.60 -0.02 3.80 16 15 N -0.59 -14.35 2.97 -172.01 -0.51 -14.86 16 16 C -0.26 -6.89 9.58 -15.06 -0.14 -7.03 16 17 H 0.07 1.72 7.89 -52.49 -0.41 1.30 16 18 C 0.00 0.13 4.90 -17.43 -0.09 0.04 16 19 N -0.90 -25.71 11.20 55.49 0.62 -25.09 16 20 Si 0.90 21.20 29.59 -169.99 -5.03 16.17 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 C 0.13 2.57 6.54 -3.57 -0.02 2.54 16 25 C 0.08 1.35 5.54 -3.56 -0.02 1.33 16 26 H 0.05 0.46 7.51 -51.93 -0.39 0.07 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.54 8.01 -51.93 -0.42 0.13 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.60 7.76 -51.93 -0.40 0.19 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.08 1.14 5.10 -51.93 -0.27 0.88 16 37 H 0.08 1.65 6.99 -51.93 -0.36 1.28 16 38 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.10 2.61 5.99 -51.92 -0.31 2.30 16 40 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 42 H 0.07 1.23 7.93 -51.93 -0.41 0.82 16 43 H 0.02 0.47 7.19 -51.93 -0.37 0.10 16 44 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 45 H 0.08 1.03 4.63 -51.92 -0.24 0.79 16 LS Contribution 337.56 15.07 5.09 5.09 Total: -1.00 -30.18 337.56 -8.93 -39.11 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -7.67 Total: 0.84 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: -1.01 Total: 1.61 kcal Atomic # 7 Polarization: -50.99 SS G_CDS: -0.39 Total: -51.38 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.08 Total: -11.44 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.17 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.18 -8.93 -39.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336226543.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.916 kcal (2) G-P(sol) polarization free energy of solvation -30.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds