Wall clock time and date at job start Tue Mar 31 2020 02:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47148 * 2 1 4 4 H 1.08999 * 110.01242 * 306.38790 * 3 2 1 5 5 C 1.54266 * 110.07507 * 67.80729 * 3 2 1 6 6 C 1.54892 * 104.19551 * 142.91537 * 5 3 2 7 7 C 1.54894 * 102.74557 * 322.05746 * 6 5 3 8 8 C 1.53881 * 110.02930 * 184.99889 * 3 2 1 9 9 H 1.09000 * 110.03354 * 359.97438 * 8 3 2 10 10 C 1.50700 * 110.02945 * 121.38052 * 8 3 2 11 11 O 1.21277 * 120.00332 * 359.97438 * 10 8 3 12 12 N 1.34772 * 119.99753 * 179.97438 * 10 8 3 13 13 C 1.46966 * 120.59289 * 179.97438 * 12 10 8 14 14 C 1.53371 * 108.77348 * 124.83770 * 13 12 10 15 15 N 1.46962 * 108.63810 * 49.33901 * 14 13 12 16 16 C 1.36941 * 120.59459 * 124.79615 * 15 14 13 17 17 H 1.07997 * 119.99598 * 208.15842 * 16 15 14 18 18 C 1.38815 * 119.99989 * 28.15611 * 16 15 14 19 19 N 1.31619 * 119.99979 * 17.56419 * 18 16 15 20 20 Si 1.86805 * 119.99768 * 197.56497 * 18 16 15 21 21 H 1.48503 * 109.46961 * 59.99970 * 20 18 16 22 22 H 1.48501 * 109.46934 * 179.97438 * 20 18 16 23 23 H 1.48492 * 109.46893 * 300.00010 * 20 18 16 24 24 C 1.46964 * 118.81269 * 304.76977 * 15 14 13 25 25 C 1.46996 * 120.61789 * 359.75349 * 12 10 8 26 26 H 1.09001 * 109.46989 * 300.00278 * 1 2 3 27 27 H 1.08995 * 109.46988 * 60.00608 * 1 2 3 28 28 H 1.09004 * 109.47111 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47565 * 239.99337 * 2 1 3 30 30 H 1.09006 * 109.46893 * 119.99853 * 2 1 3 31 31 H 1.08992 * 110.48454 * 261.59855 * 5 3 2 32 32 H 1.09003 * 110.48369 * 24.10295 * 5 3 2 33 33 H 1.09002 * 110.75170 * 80.36894 * 6 5 3 34 34 H 1.08994 * 110.75175 * 203.55950 * 6 5 3 35 35 H 1.09001 * 110.48539 * 279.25963 * 7 6 5 36 36 H 1.09000 * 110.47660 * 156.62118 * 7 6 5 37 37 H 1.08991 * 109.60902 * 5.00345 * 13 12 10 38 38 H 1.08998 * 109.60808 * 244.66556 * 13 12 10 39 39 H 1.09009 * 109.60728 * 169.08248 * 14 13 12 40 40 H 1.09005 * 109.60974 * 289.41621 * 14 13 12 41 41 H 0.96998 * 119.99864 * 180.02562 * 19 18 16 42 42 H 1.08991 * 109.61001 * 174.97399 * 24 15 14 43 43 H 1.08998 * 109.60793 * 295.48876 * 24 15 14 44 44 H 1.09002 * 109.46641 * 115.41854 * 25 12 10 45 45 H 1.09010 * 109.75608 * 355.07856 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5915 1.9967 -0.8245 5 6 1.7005 2.1242 1.3416 6 6 2.9289 3.0216 1.6332 7 6 4.1124 2.1506 1.1435 8 6 3.5736 1.4593 -0.1260 9 1 3.9545 0.4399 -0.1867 10 6 3.9824 2.2370 -1.3504 11 8 3.1367 2.7349 -2.0629 12 7 5.2879 2.3791 -1.6536 13 6 5.7012 3.1343 -2.8447 14 6 6.6772 4.2370 -2.4159 15 7 7.7132 3.6408 -1.5609 16 6 9.0395 3.7835 -1.8705 17 1 9.7496 3.0297 -1.5641 18 6 9.4711 4.8971 -2.5780 19 7 8.7064 5.9657 -2.6538 20 14 11.1373 4.8790 -3.4224 21 1 11.1733 3.7821 -4.4229 22 1 11.3603 6.1787 -4.1053 23 1 12.2025 4.6615 -2.4110 24 6 7.3004 2.8891 -0.3674 25 6 6.3244 1.7859 -0.7965 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 0.7998 2.7301 1.2444 32 1 1.5749 1.3789 2.1271 33 1 2.8720 3.9505 1.0657 34 1 3.0124 3.2270 2.7004 35 1 4.3786 1.4099 1.8975 36 1 4.9717 2.7761 0.9017 37 1 4.8263 3.5828 -3.3152 38 1 6.1929 2.4645 -3.5500 39 1 7.1406 4.6787 -3.2982 40 1 6.1395 5.0061 -1.8613 41 1 9.0079 6.7437 -3.1485 42 1 8.1753 2.4406 0.1031 43 1 6.8076 3.5607 0.3355 44 1 6.8614 1.0185 -1.3541 45 1 5.8632 1.3418 0.0858 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336226543.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:40:34 Heat of formation + Delta-G solvation = -44.137526 kcal Electronic energy + Delta-G solvation = -23407.333328 eV Core-core repulsion = 20230.896745 eV Total energy + Delta-G solvation = -3176.436583 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.63344 -39.10625 -38.07153 -35.72237 -34.01916 -33.06748 -32.25499 -30.14352 -28.59356 -28.40148 -25.64163 -24.57633 -23.76704 -22.52067 -21.80755 -20.78029 -19.75077 -18.53964 -17.74620 -17.24260 -16.72496 -16.58326 -15.96252 -15.61350 -15.51453 -15.23143 -15.16375 -14.97637 -14.50499 -14.13372 -13.82501 -13.65957 -13.39885 -13.17539 -12.79789 -12.62896 -12.58646 -12.43974 -12.33519 -12.04394 -12.01605 -11.92141 -11.78884 -11.74134 -11.64779 -11.57898 -11.30250 -11.24158 -10.63128 -10.59148 -9.82159 -8.67492 -7.89456 -5.38110 1.47746 1.50741 1.57165 1.65726 2.06560 2.50668 3.25416 3.48032 3.55737 3.62309 3.68139 4.06936 4.22667 4.25378 4.27424 4.33183 4.39270 4.45818 4.48715 4.55818 4.62223 4.72813 4.76814 4.77863 4.79246 4.85505 4.89861 4.94532 5.01641 5.06759 5.14499 5.22689 5.23969 5.27334 5.35337 5.41782 5.43407 5.48452 5.59139 5.63567 5.69811 6.33796 6.55071 7.07787 7.21411 7.77869 8.31377 9.15825 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.037355 B = 0.004075 C = 0.003987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.392210 B = 6870.215161 C = 7020.816096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.110 4.110 3 C -0.088 4.088 4 H 0.061 0.939 5 C -0.108 4.108 6 C -0.128 4.128 7 C -0.120 4.120 8 C -0.102 4.102 9 H 0.120 0.880 10 C 0.508 3.492 11 O -0.593 6.593 12 N -0.602 5.602 13 C 0.101 3.899 14 C 0.172 3.828 15 N -0.608 5.608 16 C -0.265 4.265 17 H 0.077 0.923 18 C -0.050 4.050 19 N -0.937 5.937 20 Si 0.970 3.030 21 H -0.277 1.277 22 H -0.298 1.298 23 H -0.272 1.272 24 C 0.126 3.874 25 C 0.094 3.906 26 H 0.062 0.938 27 H 0.039 0.961 28 H 0.064 0.936 29 H 0.052 0.948 30 H 0.083 0.917 31 H 0.060 0.940 32 H 0.092 0.908 33 H 0.034 0.966 34 H 0.088 0.912 35 H 0.112 0.888 36 H 0.059 0.941 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.068 0.932 40 H -0.011 1.011 41 H 0.250 0.750 42 H 0.081 0.919 43 H 0.017 0.983 44 H 0.072 0.928 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.543 -13.713 9.841 20.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.148 4.148 3 C -0.106 4.106 4 H 0.079 0.921 5 C -0.145 4.145 6 C -0.165 4.165 7 C -0.157 4.157 8 C -0.123 4.123 9 H 0.138 0.862 10 C 0.299 3.701 11 O -0.475 6.475 12 N -0.333 5.333 13 C -0.024 4.024 14 C 0.046 3.954 15 N -0.331 5.331 16 C -0.395 4.395 17 H 0.094 0.906 18 C -0.246 4.246 19 N -0.583 5.583 20 Si 0.798 3.202 21 H -0.203 1.203 22 H -0.225 1.225 23 H -0.198 1.198 24 C 0.000 4.000 25 C -0.029 4.029 26 H 0.081 0.919 27 H 0.058 0.942 28 H 0.083 0.917 29 H 0.071 0.929 30 H 0.102 0.898 31 H 0.079 0.921 32 H 0.111 0.889 33 H 0.053 0.947 34 H 0.106 0.894 35 H 0.131 0.869 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.007 0.993 41 H 0.059 0.941 42 H 0.100 0.900 43 H 0.035 0.965 44 H 0.090 0.910 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -11.910 -13.315 9.400 20.187 hybrid contribution 0.965 0.987 -1.080 1.753 sum -10.945 -12.328 8.320 18.466 Atomic orbital electron populations 1.21764 0.95362 1.01997 1.01657 1.21602 0.96428 0.94410 1.02338 1.21827 0.92077 0.97775 0.98968 0.92097 1.22401 0.97263 0.98533 0.96287 1.22506 0.95133 0.97416 1.01482 1.22613 0.98022 0.99620 0.95452 1.22053 0.98137 1.00261 0.91843 0.86199 1.21401 0.81272 0.80184 0.87269 1.90583 1.51089 1.51788 1.54051 1.48120 1.06070 1.52701 1.26412 1.22066 0.97962 0.94854 0.87527 1.20831 0.88130 0.91263 0.95219 1.44224 1.02112 1.62047 1.24739 1.19553 0.85018 1.02214 1.32721 0.90556 1.25862 1.01390 0.94307 1.03026 1.70185 1.39856 1.03562 1.44657 0.85303 0.79905 0.76303 0.78691 1.20317 1.22463 1.19769 1.21503 0.97104 0.92775 0.88576 1.22527 0.89246 0.95895 0.95267 0.91860 0.94204 0.91696 0.92915 0.89798 0.92115 0.88937 0.94666 0.89363 0.86943 0.92195 0.91198 0.91844 0.91342 0.99254 0.94076 0.90047 0.96463 0.90975 0.86120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 9.77 71.98 0.70 -1.68 16 2 C -0.11 -1.90 5.06 30.60 0.15 -1.74 16 3 C -0.09 -1.98 2.52 -10.07 -0.03 -2.01 16 4 H 0.06 1.86 6.39 -2.39 -0.02 1.85 16 5 C -0.11 -2.01 5.54 31.67 0.18 -1.83 16 6 C -0.13 -2.73 6.91 31.89 0.22 -2.51 16 7 C -0.12 -2.50 4.88 31.67 0.15 -2.34 16 8 C -0.10 -2.44 2.07 -10.82 -0.02 -2.46 16 9 H 0.12 2.27 7.40 -2.39 -0.02 2.25 16 10 C 0.51 17.71 7.01 87.66 0.61 18.32 16 11 O -0.59 -25.33 14.61 -3.02 -0.04 -25.38 16 12 N -0.60 -21.71 2.92 -817.85 -2.39 -24.10 16 13 C 0.10 4.25 6.59 86.42 0.57 4.81 16 14 C 0.17 8.65 5.52 86.42 0.48 9.12 16 15 N -0.61 -29.82 2.97 -698.12 -2.07 -31.89 16 16 C -0.27 -14.09 9.58 84.03 0.80 -13.28 16 17 H 0.08 3.84 7.89 -2.91 -0.02 3.81 16 18 C -0.05 -2.77 4.90 84.86 0.42 -2.35 16 19 N -0.94 -55.49 11.20 21.65 0.24 -55.24 16 20 Si 0.97 44.01 29.59 68.60 2.03 46.04 16 21 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 22 H -0.30 -13.80 7.11 99.48 0.71 -13.10 16 23 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 24 C 0.13 4.79 6.54 86.43 0.57 5.36 16 25 C 0.09 2.83 5.54 86.42 0.48 3.31 16 26 H 0.06 0.89 7.51 -2.39 -0.02 0.87 16 27 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 29 H 0.05 0.98 8.14 -2.39 -0.02 0.97 16 30 H 0.08 1.08 8.01 -2.38 -0.02 1.06 16 31 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.09 1.26 7.76 -2.39 -0.02 1.24 16 33 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.06 1.55 5.10 -2.39 -0.01 1.53 16 37 H 0.07 3.06 6.99 -2.39 -0.02 3.04 16 38 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 39 H 0.07 3.83 5.99 -2.38 -0.01 3.82 16 40 H -0.01 -0.59 8.14 -2.38 -0.02 -0.61 16 41 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 42 H 0.08 2.83 7.93 -2.39 -0.02 2.81 16 43 H 0.02 0.69 7.19 -2.39 -0.02 0.67 16 44 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 45 H 0.12 2.64 4.63 -2.38 -0.01 2.63 16 Total: -1.00 -68.60 337.56 4.01 -64.60 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: 0.95 Total: 15.27 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: 5.29 Total: 10.71 kcal Atomic # 7 Polarization: -107.02 SS G_CDS: -4.22 Total: -111.24 kcal Atomic # 8 Polarization: -25.33 SS G_CDS: -0.04 Total: -25.38 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -68.60 4.01 -64.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336226543.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.458 kcal (2) G-P(sol) polarization free energy of solvation -68.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds