Wall clock time and date at job start Tue Mar 31 2020 01:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.47002 * 2 1 4 4 C 1.52998 * 109.46857 * 119.99709 * 2 1 3 5 5 H 1.08994 * 108.98286 * 58.85733 * 4 2 1 6 6 C 1.50743 * 108.93184 * 177.66673 * 4 2 1 7 7 N 1.47600 * 108.45590 * 213.95049 * 6 4 2 8 8 C 1.46894 * 111.00172 * 152.98942 * 7 6 4 9 9 C 1.53001 * 109.46887 * 292.28363 * 8 7 6 10 10 H 1.09004 * 109.47130 * 56.39905 * 9 8 7 11 11 C 1.47196 * 109.47162 * 296.39840 * 9 8 7 12 12 N 5.32363 * 112.34871 * 184.16117 * 2 1 3 13 13 C 1.53004 * 109.46842 * 176.39623 * 9 8 7 14 14 C 1.50700 * 109.47053 * 184.99898 * 13 9 8 15 15 H 1.07998 * 120.00078 * 0.02562 * 14 13 9 16 16 C 1.37881 * 120.00042 * 179.72797 * 14 13 9 17 17 N 1.31508 * 119.99890 * 0.27346 * 16 14 13 18 18 Si 1.86799 * 119.99891 * 180.27480 * 16 14 13 19 19 H 1.48507 * 109.46859 * 90.00065 * 18 16 14 20 20 H 1.48497 * 109.47201 * 209.99952 * 18 16 14 21 21 H 1.48499 * 109.47265 * 330.00113 * 18 16 14 22 22 C 1.40464 * 114.42600 * 279.57323 * 7 6 4 23 23 C 1.54384 * 111.45675 * 61.24147 * 22 7 6 24 24 C 1.50724 * 109.13530 * 284.57195 * 23 22 7 25 25 O 1.43930 * 109.00177 * 300.00021 * 4 2 1 26 26 H 1.09001 * 109.46970 * 60.00394 * 1 2 3 27 27 H 1.09001 * 109.46801 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47678 * 300.00150 * 1 2 3 29 29 H 1.09000 * 109.47291 * 239.99999 * 2 1 3 30 30 H 1.08996 * 109.46950 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.46936 * 299.99627 * 3 2 1 32 32 H 1.09000 * 109.47099 * 59.99881 * 3 2 1 33 33 H 1.09000 * 109.63431 * 94.26075 * 6 4 2 34 34 H 1.09001 * 109.64085 * 333.64282 * 6 4 2 35 35 H 1.08994 * 109.47457 * 172.28055 * 8 7 6 36 36 H 1.08998 * 109.47271 * 52.28067 * 8 7 6 37 37 H 1.09001 * 109.46620 * 65.00389 * 13 9 8 38 38 H 1.08992 * 109.47578 * 305.00351 * 13 9 8 39 39 H 0.96996 * 120.00064 * 179.97438 * 17 16 14 40 40 H 1.08998 * 109.08430 * 181.75691 * 22 7 6 41 41 H 1.09002 * 109.07900 * 300.73230 * 22 7 6 42 42 H 1.09005 * 109.52617 * 44.46716 * 23 22 7 43 43 H 1.08996 * 109.52894 * 164.66670 * 23 22 7 44 44 H 1.09005 * 108.80572 * 212.39308 * 24 23 22 45 45 H 1.08997 * 108.80582 * 330.76438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6555 -1.7411 1.2516 6 6 3.5462 -0.7646 1.2084 7 7 3.9942 -2.0273 1.8276 8 6 5.2941 -2.4466 1.2870 9 6 5.1319 -2.8414 -0.1823 10 1 4.7009 -2.0080 -0.7370 11 6 4.2415 -4.0094 -0.2810 12 7 3.5543 -4.9108 -0.3573 13 6 6.5003 -3.1921 -0.7701 14 6 6.3588 -3.4619 -2.2460 15 1 5.3899 -3.3900 -2.7176 16 6 7.4673 -3.7945 -2.9954 17 7 8.6472 -3.8816 -2.4212 18 14 7.2931 -4.1214 -4.8263 19 1 7.4755 -2.8520 -5.5753 20 1 8.3235 -5.1011 -5.2545 21 1 5.9418 -4.6706 -5.1048 22 6 4.0150 -2.0101 3.2320 23 6 2.6071 -1.7612 3.8146 24 6 2.2544 -0.3051 3.6493 25 8 1.5546 -0.0348 2.4176 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 3.1300 1.4426 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 3.9522 0.0805 1.7644 34 1 3.8859 -0.7233 0.1735 35 1 5.6651 -3.3004 1.8539 36 1 6.0032 -1.6225 1.3656 37 1 6.8918 -4.0804 -0.2743 38 1 7.1859 -2.3587 -0.6172 39 1 9.4270 -4.1160 -2.9484 40 1 4.3865 -2.9685 3.5947 41 1 4.6851 -1.2191 3.5688 42 1 1.8794 -2.3749 3.2837 43 1 2.6000 -2.0199 4.8734 44 1 1.6255 0.0012 4.4853 45 1 3.1720 0.2829 3.6666 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339824665.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:48:04 Heat of formation + Delta-G solvation = -33.220061 kcal Electronic energy + Delta-G solvation = -23079.368945 eV Core-core repulsion = 19903.405779 eV Total energy + Delta-G solvation = -3175.963167 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.16645 -37.36827 -35.85884 -35.13362 -33.66404 -32.27367 -31.12134 -28.84970 -27.20555 -26.80990 -25.54288 -23.35459 -21.89466 -21.45405 -20.91340 -19.51634 -17.16277 -16.80353 -16.57029 -16.10635 -15.41576 -14.95007 -14.72419 -14.44325 -14.06509 -13.97121 -13.55810 -13.21695 -13.09515 -12.73538 -12.54121 -12.27694 -12.15945 -12.06797 -11.93384 -11.72694 -11.42879 -11.29911 -11.17118 -11.06731 -10.91161 -10.89037 -10.69295 -10.60212 -10.46005 -10.39529 -10.15571 -9.55079 -9.42728 -9.24297 -8.47286 -8.16505 -6.11322 -4.14505 3.28080 3.35263 3.39951 3.68698 3.72473 3.81073 3.90055 4.39890 4.66749 4.71697 4.83853 4.89712 4.92722 5.06466 5.13435 5.22210 5.27007 5.34236 5.38667 5.49282 5.54147 5.61057 5.68723 5.71242 5.73878 5.80139 5.84229 5.89398 5.93094 5.98473 6.07338 6.15032 6.17842 6.31447 6.36333 6.42019 6.48282 7.05769 7.21057 7.39439 7.46342 7.50918 7.83835 8.21191 8.58178 8.90185 9.51181 10.99596 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.019247 B = 0.004603 C = 0.004146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.399245 B = 6081.361362 C = 6751.548811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.092 4.092 3 C -0.145 4.145 4 C 0.100 3.900 5 H 0.072 0.928 6 C 0.029 3.971 7 N -0.560 5.560 8 C 0.068 3.932 9 C 0.010 3.990 10 H 0.099 0.901 11 C 0.257 3.743 12 N -0.479 5.479 13 C 0.031 3.969 14 C -0.526 4.526 15 H 0.057 0.943 16 C 0.063 3.937 17 N -0.892 5.892 18 Si 0.891 3.109 19 H -0.279 1.279 20 H -0.286 1.286 21 H -0.273 1.273 22 C 0.071 3.929 23 C -0.156 4.156 24 C 0.064 3.936 25 O -0.386 6.386 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.084 0.916 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.060 0.940 33 H 0.049 0.951 34 H 0.096 0.904 35 H 0.080 0.920 36 H 0.055 0.945 37 H 0.026 0.974 38 H 0.037 0.963 39 H 0.262 0.738 40 H 0.075 0.925 41 H 0.023 0.977 42 H 0.083 0.917 43 H 0.078 0.922 44 H 0.083 0.917 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.396 10.691 11.397 18.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.111 4.111 3 C -0.202 4.202 4 C 0.042 3.958 5 H 0.090 0.910 6 C -0.097 4.097 7 N -0.284 5.284 8 C -0.060 4.060 9 C -0.012 4.012 10 H 0.116 0.884 11 C -0.060 4.060 12 N -0.156 5.156 13 C -0.007 4.007 14 C -0.564 4.564 15 H 0.075 0.925 16 C -0.139 4.139 17 N -0.530 5.530 18 Si 0.718 3.282 19 H -0.205 1.205 20 H -0.211 1.211 21 H -0.198 1.198 22 C -0.058 4.058 23 C -0.194 4.194 24 C -0.013 4.013 25 O -0.307 6.307 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.102 0.898 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.114 0.886 35 H 0.098 0.902 36 H 0.073 0.927 37 H 0.044 0.956 38 H 0.055 0.945 39 H 0.072 0.928 40 H 0.093 0.907 41 H 0.041 0.959 42 H 0.101 0.899 43 H 0.097 0.903 44 H 0.101 0.899 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -11.720 9.087 11.143 18.550 hybrid contribution 1.177 0.462 -0.733 1.462 sum -10.543 9.550 10.410 17.627 Atomic orbital electron populations 1.21742 0.94809 1.01645 1.01674 1.21289 0.96606 0.96909 0.96262 1.21795 1.00896 0.95740 1.01782 1.21953 0.92743 0.96110 0.84956 0.91027 1.22568 0.95903 0.89922 1.01356 1.59136 1.30458 1.31887 1.06884 1.22203 0.88341 1.00464 0.95001 1.19276 0.96365 0.90373 0.95173 0.88353 1.28817 0.92103 0.93887 0.91229 1.80985 1.12238 1.11984 1.10384 1.19172 0.87571 0.98133 0.95863 1.21127 0.94253 1.47865 0.93150 0.92503 1.24944 0.95255 0.95081 0.98620 1.69932 0.98902 1.48125 1.36074 0.86601 0.78027 0.78184 0.85348 1.20464 1.21144 1.19816 1.21101 0.95869 1.01099 0.87739 1.22101 0.98057 0.97526 1.01680 1.22289 0.97002 0.95234 0.86753 1.88225 1.57721 1.69245 1.15468 0.93029 0.92965 0.92035 0.89822 0.92710 0.92956 0.92088 0.93253 0.88582 0.90168 0.92652 0.95572 0.94492 0.92793 0.90683 0.95919 0.89877 0.90301 0.89924 0.93689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.04 37.16 0.34 -1.19 16 2 C -0.09 -1.04 2.57 -90.62 -0.23 -1.27 16 3 C -0.14 -1.50 8.82 37.16 0.33 -1.17 16 4 C 0.10 1.22 1.96 -27.86 -0.05 1.17 16 5 H 0.07 1.02 7.26 -51.93 -0.38 0.64 16 6 C 0.03 0.36 3.53 -4.57 -0.02 0.34 16 7 N -0.56 -7.36 3.67 -239.61 -0.88 -8.24 16 8 C 0.07 0.98 4.32 -3.83 -0.02 0.97 16 9 C 0.01 0.18 2.17 -93.41 -0.20 -0.02 16 10 H 0.10 1.67 6.23 -51.93 -0.32 1.35 16 11 C 0.26 5.30 13.63 -20.76 -0.28 5.01 16 12 N -0.48 -10.78 18.54 42.16 0.78 -10.00 16 13 C 0.03 0.71 4.42 -27.88 -0.12 0.59 16 14 C -0.53 -13.83 8.60 -34.44 -0.30 -14.12 16 15 H 0.06 1.49 7.59 -52.49 -0.40 1.09 16 16 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 17 N -0.89 -25.30 13.29 55.43 0.74 -24.56 16 18 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 22 C 0.07 0.80 4.96 -6.43 -0.03 0.77 16 23 C -0.16 -1.57 5.67 -27.15 -0.15 -1.72 16 24 C 0.06 0.64 6.26 36.02 0.23 0.87 16 25 O -0.39 -4.67 9.14 -35.23 -0.32 -4.99 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.68 7.66 -51.93 -0.40 0.28 16 29 H 0.08 0.98 8.03 -51.93 -0.42 0.57 16 30 H 0.05 0.56 7.18 -51.93 -0.37 0.19 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.65 7.66 -51.93 -0.40 0.25 16 33 H 0.05 0.58 6.85 -51.93 -0.36 0.23 16 34 H 0.10 1.21 5.33 -51.93 -0.28 0.93 16 35 H 0.08 1.17 7.74 -51.93 -0.40 0.77 16 36 H 0.06 0.74 8.11 -51.93 -0.42 0.32 16 37 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 40 H 0.07 0.84 7.78 -51.93 -0.40 0.44 16 41 H 0.02 0.24 7.63 -51.93 -0.40 -0.15 16 42 H 0.08 0.99 7.25 -51.93 -0.38 0.61 16 43 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 45 H 0.04 0.45 6.60 -51.93 -0.34 0.10 16 LS Contribution 351.11 15.07 5.29 5.29 Total: -1.00 -29.47 351.11 -7.79 -37.25 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -7.75 Total: -2.72 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: -0.62 Total: -8.15 kcal Atomic # 7 Polarization: -43.44 SS G_CDS: 0.64 Total: -42.80 kcal Atomic # 8 Polarization: -4.67 SS G_CDS: -0.32 Total: -4.99 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.47 -7.79 -37.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339824665.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.035 kcal (2) G-P(sol) polarization free energy of solvation -29.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds