Wall clock time and date at job start Tue Mar 31 2020 01:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.47002 * 2 1 4 4 C 1.52998 * 109.46857 * 119.99709 * 2 1 3 5 5 H 1.08994 * 108.98286 * 58.85733 * 4 2 1 6 6 C 1.50743 * 108.93184 * 177.66673 * 4 2 1 7 7 N 1.47600 * 108.45590 * 213.95049 * 6 4 2 8 8 C 1.46894 * 111.00172 * 152.98942 * 7 6 4 9 9 C 1.53001 * 109.46887 * 292.28363 * 8 7 6 10 10 H 1.09004 * 109.47130 * 56.39905 * 9 8 7 11 11 C 1.47196 * 109.47162 * 296.39840 * 9 8 7 12 12 N 5.32363 * 112.34871 * 184.16117 * 2 1 3 13 13 C 1.53004 * 109.46842 * 176.39623 * 9 8 7 14 14 C 1.50700 * 109.47053 * 184.99898 * 13 9 8 15 15 H 1.07998 * 120.00078 * 0.02562 * 14 13 9 16 16 C 1.37881 * 120.00042 * 179.72797 * 14 13 9 17 17 N 1.31508 * 119.99890 * 0.27346 * 16 14 13 18 18 Si 1.86799 * 119.99891 * 180.27480 * 16 14 13 19 19 H 1.48507 * 109.46859 * 90.00065 * 18 16 14 20 20 H 1.48497 * 109.47201 * 209.99952 * 18 16 14 21 21 H 1.48499 * 109.47265 * 330.00113 * 18 16 14 22 22 C 1.40464 * 114.42600 * 279.57323 * 7 6 4 23 23 C 1.54384 * 111.45675 * 61.24147 * 22 7 6 24 24 C 1.50724 * 109.13530 * 284.57195 * 23 22 7 25 25 O 1.43930 * 109.00177 * 300.00021 * 4 2 1 26 26 H 1.09001 * 109.46970 * 60.00394 * 1 2 3 27 27 H 1.09001 * 109.46801 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47678 * 300.00150 * 1 2 3 29 29 H 1.09000 * 109.47291 * 239.99999 * 2 1 3 30 30 H 1.08996 * 109.46950 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.46936 * 299.99627 * 3 2 1 32 32 H 1.09000 * 109.47099 * 59.99881 * 3 2 1 33 33 H 1.09000 * 109.63431 * 94.26075 * 6 4 2 34 34 H 1.09001 * 109.64085 * 333.64282 * 6 4 2 35 35 H 1.08994 * 109.47457 * 172.28055 * 8 7 6 36 36 H 1.08998 * 109.47271 * 52.28067 * 8 7 6 37 37 H 1.09001 * 109.46620 * 65.00389 * 13 9 8 38 38 H 1.08992 * 109.47578 * 305.00351 * 13 9 8 39 39 H 0.96996 * 120.00064 * 179.97438 * 17 16 14 40 40 H 1.08998 * 109.08430 * 181.75691 * 22 7 6 41 41 H 1.09002 * 109.07900 * 300.73230 * 22 7 6 42 42 H 1.09005 * 109.52617 * 44.46716 * 23 22 7 43 43 H 1.08996 * 109.52894 * 164.66670 * 23 22 7 44 44 H 1.09005 * 108.80572 * 212.39308 * 24 23 22 45 45 H 1.08997 * 108.80582 * 330.76438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6555 -1.7411 1.2516 6 6 3.5462 -0.7646 1.2084 7 7 3.9942 -2.0273 1.8276 8 6 5.2941 -2.4466 1.2870 9 6 5.1319 -2.8414 -0.1823 10 1 4.7009 -2.0080 -0.7370 11 6 4.2415 -4.0094 -0.2810 12 7 3.5543 -4.9108 -0.3573 13 6 6.5003 -3.1921 -0.7701 14 6 6.3588 -3.4619 -2.2460 15 1 5.3899 -3.3900 -2.7176 16 6 7.4673 -3.7945 -2.9954 17 7 8.6472 -3.8816 -2.4212 18 14 7.2931 -4.1214 -4.8263 19 1 7.4755 -2.8520 -5.5753 20 1 8.3235 -5.1011 -5.2545 21 1 5.9418 -4.6706 -5.1048 22 6 4.0150 -2.0101 3.2320 23 6 2.6071 -1.7612 3.8146 24 6 2.2544 -0.3051 3.6493 25 8 1.5546 -0.0348 2.4176 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 3.1300 1.4426 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 3.9522 0.0805 1.7644 34 1 3.8859 -0.7233 0.1735 35 1 5.6651 -3.3004 1.8539 36 1 6.0032 -1.6225 1.3656 37 1 6.8918 -4.0804 -0.2743 38 1 7.1859 -2.3587 -0.6172 39 1 9.4270 -4.1160 -2.9484 40 1 4.3865 -2.9685 3.5947 41 1 4.6851 -1.2191 3.5688 42 1 1.8794 -2.3749 3.2837 43 1 2.6000 -2.0199 4.8734 44 1 1.6255 0.0012 4.4853 45 1 3.1720 0.2829 3.6666 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339824665.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:48:04 Heat of formation + Delta-G solvation = -49.760700 kcal Electronic energy + Delta-G solvation = -23080.086201 eV Core-core repulsion = 19903.405779 eV Total energy + Delta-G solvation = -3176.680422 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.13555 -38.63878 -37.14351 -36.15136 -35.46138 -33.79139 -32.30769 -29.96073 -28.45755 -27.87881 -26.65580 -24.75625 -23.53774 -22.46438 -21.88229 -20.43436 -18.58089 -18.20458 -17.98166 -17.24790 -16.60572 -16.38402 -15.92673 -15.68737 -15.09366 -14.92803 -14.70191 -14.57583 -14.26422 -14.08075 -13.84501 -13.77215 -13.40220 -13.21526 -13.09804 -13.00704 -12.83284 -12.67489 -12.49269 -12.45437 -12.35118 -12.15887 -11.82702 -11.77834 -11.71088 -11.51808 -11.31475 -11.22786 -11.06710 -10.54155 -10.33617 -9.16900 -8.19023 -6.26976 1.40486 1.42876 1.51778 2.07042 2.14792 2.41925 2.81012 2.86159 3.16761 3.35454 3.78692 3.85746 3.94217 4.00005 4.17243 4.22720 4.27951 4.31977 4.36012 4.48614 4.57869 4.65428 4.68899 4.77540 4.78937 4.86647 4.90996 4.96457 4.97202 5.00765 5.07473 5.11499 5.17940 5.29554 5.31615 5.46626 5.47377 5.56292 5.61801 5.79412 6.02077 6.19655 6.28431 6.53347 6.83735 6.94139 7.41711 8.91867 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.019247 B = 0.004603 C = 0.004146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.399245 B = 6081.361362 C = 6751.548811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.095 4.095 3 C -0.139 4.139 4 C 0.108 3.892 5 H 0.047 0.953 6 C 0.033 3.967 7 N -0.570 5.570 8 C 0.078 3.922 9 C 0.021 3.979 10 H 0.114 0.886 11 C 0.267 3.733 12 N -0.514 5.514 13 C 0.038 3.962 14 C -0.538 4.538 15 H 0.053 0.947 16 C 0.014 3.986 17 N -0.923 5.923 18 Si 0.947 3.053 19 H -0.266 1.266 20 H -0.285 1.285 21 H -0.277 1.277 22 C 0.067 3.933 23 C -0.148 4.148 24 C 0.059 3.941 25 O -0.396 6.396 26 H 0.062 0.938 27 H 0.043 0.957 28 H 0.058 0.942 29 H 0.077 0.923 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.002 0.998 38 H 0.036 0.964 39 H 0.264 0.736 40 H 0.074 0.926 41 H 0.036 0.964 42 H 0.061 0.939 43 H 0.102 0.898 44 H 0.101 0.899 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.760 12.073 11.844 20.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.114 4.114 3 C -0.196 4.196 4 C 0.050 3.950 5 H 0.065 0.935 6 C -0.094 4.094 7 N -0.294 5.294 8 C -0.051 4.051 9 C -0.001 4.001 10 H 0.132 0.868 11 C -0.049 4.049 12 N -0.191 5.191 13 C 0.000 4.000 14 C -0.576 4.576 15 H 0.071 0.929 16 C -0.185 4.185 17 N -0.563 5.563 18 Si 0.772 3.228 19 H -0.191 1.191 20 H -0.211 1.211 21 H -0.202 1.202 22 C -0.062 4.062 23 C -0.186 4.186 24 C -0.017 4.017 25 O -0.316 6.316 26 H 0.081 0.919 27 H 0.062 0.938 28 H 0.077 0.923 29 H 0.096 0.904 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.110 0.890 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.020 0.980 38 H 0.054 0.946 39 H 0.073 0.927 40 H 0.092 0.908 41 H 0.054 0.946 42 H 0.080 0.920 43 H 0.120 0.880 44 H 0.119 0.881 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.096 10.481 11.599 19.766 hybrid contribution 1.267 0.025 -0.827 1.513 sum -10.829 10.507 10.772 18.539 Atomic orbital electron populations 1.21702 0.94469 1.01216 1.02087 1.21313 0.96959 0.97525 0.95590 1.21740 1.00930 0.94845 1.02097 1.21787 0.92608 0.95007 0.85614 0.93484 1.22553 0.95840 0.89823 1.01166 1.59075 1.29558 1.32654 1.08148 1.22033 0.89562 1.01106 0.92356 1.19234 0.93288 0.89733 0.97833 0.86808 1.29310 0.91685 0.93819 0.90120 1.80982 1.13428 1.13008 1.11719 1.18987 0.89965 0.96934 0.94152 1.21527 0.93942 1.47098 0.95031 0.92886 1.25675 0.95168 0.95226 1.02472 1.70022 0.99494 1.49299 1.37462 0.85722 0.77550 0.78424 0.81056 1.19108 1.21061 1.20157 1.21187 0.96909 1.01576 0.86485 1.22054 0.96608 0.97252 1.02679 1.22460 0.97610 0.95192 0.86420 1.88215 1.58270 1.69171 1.15990 0.91905 0.93818 0.92278 0.90436 0.92558 0.92079 0.92303 0.92240 0.88982 0.90266 0.90941 0.98003 0.94592 0.92725 0.90769 0.94602 0.92006 0.87983 0.88123 0.93086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 9.04 71.98 0.65 -2.19 16 2 C -0.09 -2.06 2.57 -10.79 -0.03 -2.09 16 3 C -0.14 -2.63 8.82 71.98 0.64 -2.00 16 4 C 0.11 2.54 1.96 29.86 0.06 2.60 16 5 H 0.05 1.34 7.26 -2.39 -0.02 1.33 16 6 C 0.03 0.75 3.53 85.44 0.30 1.05 16 7 N -0.57 -14.19 3.67 -912.00 -3.35 -17.54 16 8 C 0.08 2.14 4.32 86.30 0.37 2.51 16 9 C 0.02 0.74 2.17 -12.60 -0.03 0.71 16 10 H 0.11 3.72 6.23 -2.39 -0.01 3.70 16 11 C 0.27 10.97 13.63 89.44 1.22 12.19 16 12 N -0.51 -23.21 18.54 20.01 0.37 -22.84 16 13 C 0.04 1.74 4.42 29.85 0.13 1.87 16 14 C -0.54 -28.18 8.60 25.60 0.22 -27.96 16 15 H 0.05 2.76 7.59 -2.91 -0.02 2.74 16 16 C 0.01 0.74 5.46 84.66 0.46 1.20 16 17 N -0.92 -52.46 13.29 21.45 0.28 -52.17 16 18 Si 0.95 43.11 29.54 68.60 2.03 45.14 16 19 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 20 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 21 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 22 C 0.07 1.38 4.96 87.94 0.44 1.82 16 23 C -0.15 -2.71 5.67 30.33 0.17 -2.53 16 24 C 0.06 1.05 6.26 71.24 0.45 1.50 16 25 O -0.40 -8.98 9.14 -148.98 -1.36 -10.34 16 26 H 0.06 1.13 8.14 -2.39 -0.02 1.12 16 27 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.06 1.24 7.66 -2.39 -0.02 1.22 16 29 H 0.08 1.77 8.03 -2.39 -0.02 1.75 16 30 H 0.06 1.04 7.18 -2.39 -0.02 1.02 16 31 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.06 1.14 7.66 -2.39 -0.02 1.12 16 33 H 0.06 1.25 6.85 -2.39 -0.02 1.24 16 34 H 0.09 2.17 5.33 -2.39 -0.01 2.16 16 35 H 0.08 2.22 7.74 -2.39 -0.02 2.20 16 36 H 0.07 1.78 8.11 -2.39 -0.02 1.76 16 37 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 38 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 40 H 0.07 1.54 7.78 -2.39 -0.02 1.52 16 41 H 0.04 0.66 7.63 -2.39 -0.02 0.64 16 42 H 0.06 1.42 7.25 -2.38 -0.02 1.41 16 43 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.10 1.44 8.14 -2.38 -0.02 1.42 16 45 H 0.05 0.86 6.60 -2.39 -0.02 0.85 16 Total: -1.00 -62.20 351.11 3.97 -58.23 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: 0.95 Total: 10.83 kcal Atomic # 6 Polarization: -16.36 SS G_CDS: 5.05 Total: -11.31 kcal Atomic # 7 Polarization: -89.85 SS G_CDS: -2.69 Total: -92.55 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: -1.36 Total: -10.34 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -62.20 3.97 -58.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339824665.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.466 kcal (2) G-P(sol) polarization free energy of solvation -62.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds