Wall clock time and date at job start Tue Mar 31 2020 03:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46816 * 2 1 4 4 H 1.08998 * 109.50974 * 305.08648 * 3 2 1 5 5 C 1.53097 * 109.50567 * 184.99575 * 3 2 1 6 6 N 1.47013 * 109.25870 * 183.21899 * 5 3 2 7 7 C 1.46894 * 111.00185 * 182.39568 * 6 5 3 8 8 C 1.52997 * 109.47206 * 66.13644 * 7 6 5 9 9 H 1.09002 * 109.47116 * 303.72156 * 8 7 6 10 10 C 1.47198 * 109.47461 * 63.72176 * 8 7 6 11 11 N 6.28940 * 122.05230 * 321.08180 * 2 1 3 12 12 C 1.53001 * 109.47470 * 183.72636 * 8 7 6 13 13 C 1.50698 * 109.47254 * 174.99855 * 12 8 7 14 14 H 1.07994 * 120.00127 * 0.02562 * 13 12 8 15 15 C 1.37884 * 119.99870 * 179.97438 * 13 12 8 16 16 N 1.31520 * 119.99785 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99743 * 180.02562 * 15 13 12 18 18 H 1.48491 * 109.47385 * 0.02562 * 17 15 13 19 19 H 1.48509 * 109.46746 * 120.00345 * 17 15 13 20 20 H 1.48498 * 109.46727 * 239.99765 * 17 15 13 21 21 C 1.47018 * 110.75511 * 58.61696 * 6 5 3 22 22 C 1.53101 * 109.25771 * 301.38898 * 21 6 5 23 23 H 1.09002 * 109.50442 * 296.90711 * 22 21 6 24 24 C 1.52996 * 109.50679 * 176.82128 * 22 21 6 25 25 C 1.53001 * 109.47150 * 174.99695 * 24 22 21 26 26 O 1.43016 * 109.25974 * 56.84311 * 22 21 6 27 27 H 1.08999 * 109.47073 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47544 * 299.99947 * 1 2 3 29 29 H 1.08996 * 109.47014 * 59.99733 * 1 2 3 30 30 H 1.08997 * 109.46971 * 119.99716 * 2 1 3 31 31 H 1.08999 * 109.47448 * 240.00572 * 2 1 3 32 32 H 1.08999 * 109.50940 * 303.15521 * 5 3 2 33 33 H 1.08995 * 109.50213 * 63.28777 * 5 3 2 34 34 H 1.09004 * 109.47188 * 186.13654 * 7 6 5 35 35 H 1.09001 * 109.47404 * 306.13714 * 7 6 5 36 36 H 1.09010 * 109.46746 * 294.99814 * 12 8 7 37 37 H 1.09000 * 109.47131 * 54.99562 * 12 8 7 38 38 H 0.96995 * 119.99413 * 179.97438 * 16 15 13 39 39 H 1.09000 * 109.50252 * 61.31841 * 21 6 5 40 40 H 1.08988 * 109.51104 * 181.44987 * 21 6 5 41 41 H 1.08999 * 109.47577 * 295.00176 * 24 22 21 42 42 H 1.09004 * 109.46873 * 54.99731 * 24 22 21 43 43 H 1.08997 * 109.46824 * 300.00054 * 25 24 22 44 44 H 1.09000 * 109.46734 * 60.00232 * 25 24 22 45 45 H 1.09007 * 109.47008 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6045 1.9826 -0.8407 5 6 3.5658 1.4454 -0.1257 6 7 4.0562 2.8291 -0.0475 7 6 5.5139 2.8816 -0.2211 8 6 5.8740 2.4497 -1.6439 9 1 5.4669 1.4570 -1.8363 10 6 5.3061 3.4079 -2.6062 11 7 4.8678 4.1475 -3.3488 12 6 7.3960 2.4149 -1.7967 13 6 7.7521 1.8726 -3.1568 14 1 6.9711 1.5822 -3.8438 15 6 9.0752 1.7482 -3.5246 16 7 10.0263 2.1033 -2.6885 17 14 9.5166 1.0766 -5.2109 18 1 8.2734 0.7546 -5.9564 19 1 10.2936 2.0956 -5.9616 20 1 10.3339 -0.1534 -5.0553 21 6 3.6538 3.4536 1.2211 22 6 2.1271 3.4306 1.3334 23 1 1.6941 4.0291 0.5318 24 6 1.7055 4.0072 2.6864 25 6 0.1796 4.0996 2.7483 26 8 1.6663 2.0811 1.2240 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.8934 -0.5137 -0.8900 32 1 3.9989 0.8594 0.6850 33 1 3.8528 1.0111 -1.0832 34 1 5.8636 3.8999 -0.0510 35 1 5.9894 2.2100 0.4938 36 1 7.7948 3.4241 -1.6920 37 1 7.8239 1.7735 -1.0263 38 1 10.9570 2.0154 -2.9471 39 1 4.0883 2.8997 2.0533 40 1 4.0051 4.4850 1.2466 41 1 2.0629 3.3577 3.4855 42 1 2.1350 5.0018 2.8071 43 1 -0.1777 4.7492 1.9493 44 1 -0.2498 3.1050 2.6275 45 1 -0.1207 4.5109 3.7121 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000420940906.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:06 Heat of formation + Delta-G solvation = -44.403635 kcal Electronic energy + Delta-G solvation = -22510.682387 eV Core-core repulsion = 19334.234264 eV Total energy + Delta-G solvation = -3176.448123 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.98010 -37.17628 -35.20100 -35.11796 -33.54181 -32.62860 -31.66682 -29.34771 -28.04399 -25.90594 -24.32056 -23.44314 -21.78391 -21.30092 -21.22598 -20.42510 -16.95070 -16.64800 -16.56814 -16.03812 -15.12100 -14.97187 -14.77452 -14.52732 -14.06690 -13.94288 -13.68522 -13.50909 -13.27601 -12.89287 -12.49281 -12.28402 -12.19959 -11.97444 -11.85373 -11.73964 -11.63867 -11.27738 -11.21348 -11.17551 -11.07468 -10.94269 -10.91207 -10.64791 -10.55643 -10.34745 -10.15157 -9.66762 -9.46750 -9.18961 -8.48087 -8.28085 -6.11692 -4.14838 3.27037 3.35405 3.39927 3.59616 3.69471 3.78932 3.86670 4.39552 4.57541 4.82157 4.83177 4.89417 4.96876 5.00996 5.13447 5.17394 5.24626 5.26584 5.28060 5.38800 5.42972 5.58539 5.62496 5.66939 5.71652 5.77896 5.79548 5.82499 5.87097 5.87665 5.96550 5.99627 6.15057 6.15569 6.22005 6.32909 6.46535 7.02948 7.06389 7.23764 7.39980 7.50078 7.83679 8.20864 8.56820 8.90069 9.50809 10.99267 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.023230 B = 0.003802 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.045379 B = 7362.214013 C = 7906.470368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.115 4.115 3 C 0.095 3.905 4 H 0.064 0.936 5 C 0.019 3.981 6 N -0.541 5.541 7 C 0.063 3.937 8 C 0.010 3.990 9 H 0.099 0.901 10 C 0.256 3.744 11 N -0.479 5.479 12 C 0.031 3.969 13 C -0.525 4.525 14 H 0.057 0.943 15 C 0.062 3.938 16 N -0.891 5.891 17 Si 0.891 3.109 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.282 1.282 21 C 0.025 3.975 22 C 0.095 3.905 23 H 0.064 0.936 24 C -0.114 4.114 25 C -0.147 4.147 26 O -0.376 6.376 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.051 0.949 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.045 0.955 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.055 0.945 36 H 0.026 0.974 37 H 0.037 0.963 38 H 0.262 0.738 39 H 0.043 0.957 40 H 0.083 0.917 41 H 0.069 0.931 42 H 0.075 0.925 43 H 0.051 0.949 44 H 0.061 0.939 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.516 -1.598 12.242 20.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.153 4.153 3 C 0.037 3.963 4 H 0.082 0.918 5 C -0.109 4.109 6 N -0.265 5.265 7 C -0.065 4.065 8 C -0.012 4.012 9 H 0.117 0.883 10 C -0.061 4.061 11 N -0.156 5.156 12 C -0.007 4.007 13 C -0.564 4.564 14 H 0.076 0.924 15 C -0.140 4.140 16 N -0.530 5.530 17 Si 0.719 3.281 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.208 1.208 21 C -0.104 4.104 22 C 0.037 3.963 23 H 0.082 0.918 24 C -0.152 4.152 25 C -0.205 4.205 26 O -0.296 6.296 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.096 0.904 32 H 0.064 0.936 33 H 0.109 0.891 34 H 0.099 0.901 35 H 0.073 0.927 36 H 0.045 0.955 37 H 0.055 0.945 38 H 0.072 0.928 39 H 0.061 0.939 40 H 0.102 0.898 41 H 0.088 0.912 42 H 0.094 0.906 43 H 0.071 0.929 44 H 0.080 0.920 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -17.308 -0.291 10.897 20.455 hybrid contribution 1.262 -0.940 -0.262 1.595 sum -16.046 -1.231 10.635 19.290 Atomic orbital electron populations 1.21688 0.95262 1.01316 1.02184 1.21521 0.96663 0.94258 1.02880 1.22178 0.93035 0.93842 0.87227 0.91772 1.22890 0.95628 0.89738 1.02671 1.62238 1.13509 1.17381 1.33362 1.22257 0.85770 1.02391 0.96130 1.19244 1.00090 0.94145 0.87691 0.88320 1.28825 0.90991 0.93312 0.92949 1.80979 1.11996 1.11371 1.11221 1.19178 0.84632 0.98657 0.98269 1.21168 0.92085 1.43111 0.99998 0.92449 1.24959 0.96511 0.95277 0.97237 1.69950 0.99923 1.47631 1.35496 0.86535 0.78590 0.78686 0.84283 1.19653 1.20949 1.20840 1.22778 0.96268 1.00501 0.90828 1.22156 0.92414 0.83903 0.97853 0.91796 1.21509 0.97070 1.00730 0.95919 1.21691 0.95346 1.02290 1.01160 1.87930 1.76793 1.25984 1.38846 0.92901 0.92091 0.92948 0.91179 0.90352 0.93646 0.89087 0.90069 0.92720 0.95540 0.94468 0.92838 0.93888 0.89841 0.91224 0.90614 0.92938 0.91972 0.92932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.81 37.16 0.36 -0.97 16 2 C -0.12 -1.13 5.64 -26.73 -0.15 -1.28 16 3 C 0.10 1.12 2.80 -26.68 -0.07 1.04 16 4 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 5 C 0.02 0.24 4.72 -3.71 -0.02 0.22 16 6 N -0.54 -7.49 4.39 -234.32 -1.03 -8.52 16 7 C 0.06 0.95 4.33 -3.83 -0.02 0.93 16 8 C 0.01 0.19 2.12 -93.41 -0.20 -0.01 16 9 H 0.10 1.71 6.35 -51.93 -0.33 1.38 16 10 C 0.26 5.37 13.64 -20.76 -0.28 5.09 16 11 N -0.48 -10.90 18.54 42.15 0.78 -10.11 16 12 C 0.03 0.72 4.42 -27.88 -0.12 0.60 16 13 C -0.53 -13.94 8.60 -34.44 -0.30 -14.24 16 14 H 0.06 1.52 7.59 -52.49 -0.40 1.12 16 15 C 0.06 1.71 5.46 -17.81 -0.10 1.61 16 16 N -0.89 -25.43 13.29 55.43 0.74 -24.69 16 17 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 18 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 C 0.02 0.29 4.93 -3.71 -0.02 0.27 16 22 C 0.09 1.06 2.80 -26.68 -0.07 0.99 16 23 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 24 C -0.11 -1.03 5.65 -26.73 -0.15 -1.18 16 25 C -0.15 -1.25 9.81 37.16 0.36 -0.88 16 26 O -0.38 -4.54 9.21 -35.23 -0.32 -4.86 16 27 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.59 7.83 -51.93 -0.41 0.18 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.09 1.17 6.30 -51.93 -0.33 0.85 16 34 H 0.08 1.22 8.04 -51.93 -0.42 0.81 16 35 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 36 H 0.03 0.66 8.14 -51.92 -0.42 0.24 16 37 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 39 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.08 0.94 8.09 -51.94 -0.42 0.52 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.06 0.58 7.83 -51.93 -0.41 0.17 16 45 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 363.47 15.07 5.48 5.48 Total: -1.00 -29.86 363.47 -8.33 -38.19 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -8.18 Total: -3.89 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: -0.77 Total: -7.81 kcal Atomic # 7 Polarization: -43.82 SS G_CDS: 0.49 Total: -43.33 kcal Atomic # 8 Polarization: -4.54 SS G_CDS: -0.32 Total: -4.86 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.86 -8.33 -38.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420940906.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.214 kcal (2) G-P(sol) polarization free energy of solvation -29.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds