Wall clock time and date at job start Tue Mar 31 2020 03:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46816 * 2 1 4 4 H 1.08998 * 109.50974 * 305.08648 * 3 2 1 5 5 C 1.53097 * 109.50567 * 184.99575 * 3 2 1 6 6 N 1.47013 * 109.25870 * 183.21899 * 5 3 2 7 7 C 1.46894 * 111.00185 * 182.39568 * 6 5 3 8 8 C 1.52997 * 109.47206 * 66.13644 * 7 6 5 9 9 H 1.09002 * 109.47116 * 303.72156 * 8 7 6 10 10 C 1.47198 * 109.47461 * 63.72176 * 8 7 6 11 11 N 6.28940 * 122.05230 * 321.08180 * 2 1 3 12 12 C 1.53001 * 109.47470 * 183.72636 * 8 7 6 13 13 C 1.50698 * 109.47254 * 174.99855 * 12 8 7 14 14 H 1.07994 * 120.00127 * 0.02562 * 13 12 8 15 15 C 1.37884 * 119.99870 * 179.97438 * 13 12 8 16 16 N 1.31520 * 119.99785 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99743 * 180.02562 * 15 13 12 18 18 H 1.48491 * 109.47385 * 0.02562 * 17 15 13 19 19 H 1.48509 * 109.46746 * 120.00345 * 17 15 13 20 20 H 1.48498 * 109.46727 * 239.99765 * 17 15 13 21 21 C 1.47018 * 110.75511 * 58.61696 * 6 5 3 22 22 C 1.53101 * 109.25771 * 301.38898 * 21 6 5 23 23 H 1.09002 * 109.50442 * 296.90711 * 22 21 6 24 24 C 1.52996 * 109.50679 * 176.82128 * 22 21 6 25 25 C 1.53001 * 109.47150 * 174.99695 * 24 22 21 26 26 O 1.43016 * 109.25974 * 56.84311 * 22 21 6 27 27 H 1.08999 * 109.47073 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47544 * 299.99947 * 1 2 3 29 29 H 1.08996 * 109.47014 * 59.99733 * 1 2 3 30 30 H 1.08997 * 109.46971 * 119.99716 * 2 1 3 31 31 H 1.08999 * 109.47448 * 240.00572 * 2 1 3 32 32 H 1.08999 * 109.50940 * 303.15521 * 5 3 2 33 33 H 1.08995 * 109.50213 * 63.28777 * 5 3 2 34 34 H 1.09004 * 109.47188 * 186.13654 * 7 6 5 35 35 H 1.09001 * 109.47404 * 306.13714 * 7 6 5 36 36 H 1.09010 * 109.46746 * 294.99814 * 12 8 7 37 37 H 1.09000 * 109.47131 * 54.99562 * 12 8 7 38 38 H 0.96995 * 119.99413 * 179.97438 * 16 15 13 39 39 H 1.09000 * 109.50252 * 61.31841 * 21 6 5 40 40 H 1.08988 * 109.51104 * 181.44987 * 21 6 5 41 41 H 1.08999 * 109.47577 * 295.00176 * 24 22 21 42 42 H 1.09004 * 109.46873 * 54.99731 * 24 22 21 43 43 H 1.08997 * 109.46824 * 300.00054 * 25 24 22 44 44 H 1.09000 * 109.46734 * 60.00232 * 25 24 22 45 45 H 1.09007 * 109.47008 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6045 1.9826 -0.8407 5 6 3.5658 1.4454 -0.1257 6 7 4.0562 2.8291 -0.0475 7 6 5.5139 2.8816 -0.2211 8 6 5.8740 2.4497 -1.6439 9 1 5.4669 1.4570 -1.8363 10 6 5.3061 3.4079 -2.6062 11 7 4.8678 4.1475 -3.3488 12 6 7.3960 2.4149 -1.7967 13 6 7.7521 1.8726 -3.1568 14 1 6.9711 1.5822 -3.8438 15 6 9.0752 1.7482 -3.5246 16 7 10.0263 2.1033 -2.6885 17 14 9.5166 1.0766 -5.2109 18 1 8.2734 0.7546 -5.9564 19 1 10.2936 2.0956 -5.9616 20 1 10.3339 -0.1534 -5.0553 21 6 3.6538 3.4536 1.2211 22 6 2.1271 3.4306 1.3334 23 1 1.6941 4.0291 0.5318 24 6 1.7055 4.0072 2.6864 25 6 0.1796 4.0996 2.7483 26 8 1.6663 2.0811 1.2240 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.8934 -0.5137 -0.8900 32 1 3.9989 0.8594 0.6850 33 1 3.8528 1.0111 -1.0832 34 1 5.8636 3.8999 -0.0510 35 1 5.9894 2.2100 0.4938 36 1 7.7948 3.4241 -1.6920 37 1 7.8239 1.7735 -1.0263 38 1 10.9570 2.0154 -2.9471 39 1 4.0883 2.8997 2.0533 40 1 4.0051 4.4850 1.2466 41 1 2.0629 3.3577 3.4855 42 1 2.1350 5.0018 2.8071 43 1 -0.1777 4.7492 1.9493 44 1 -0.2498 3.1050 2.6275 45 1 -0.1207 4.5109 3.7121 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000420940906.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:06 Heat of formation + Delta-G solvation = -61.199428 kcal Electronic energy + Delta-G solvation = -22511.410707 eV Core-core repulsion = 19334.234264 eV Total energy + Delta-G solvation = -3177.176443 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.96150 -38.58898 -36.60202 -35.92951 -35.40578 -33.46696 -33.33556 -30.20745 -29.45028 -27.34943 -25.21686 -24.74412 -23.50885 -22.29019 -22.04355 -21.39211 -18.54363 -18.29127 -17.62786 -17.22060 -16.58570 -16.06343 -16.00046 -15.68669 -15.30674 -14.83043 -14.62049 -14.50233 -14.46090 -14.24142 -14.19232 -13.77144 -13.37161 -13.17298 -13.04081 -12.98718 -12.75650 -12.65788 -12.56967 -12.52899 -12.38710 -12.09832 -11.96050 -11.84197 -11.70340 -11.57686 -11.45056 -11.27254 -11.08574 -10.56774 -10.43646 -9.34325 -8.20582 -6.28790 1.38582 1.41894 1.52169 2.03474 2.11246 2.40544 2.70070 2.79764 3.14945 3.31199 3.69662 3.92107 3.95005 4.09018 4.15050 4.21624 4.26942 4.32437 4.42670 4.45196 4.47411 4.53237 4.67557 4.72033 4.75308 4.83035 4.87302 4.91157 4.96695 4.98645 5.08923 5.12781 5.14520 5.22137 5.35052 5.44851 5.46543 5.47451 5.58957 5.77403 5.94257 6.00740 6.19611 6.32454 6.81574 6.90904 7.39952 8.90555 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.023230 B = 0.003802 C = 0.003541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.045379 B = 7362.214013 C = 7906.470368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.113 4.113 3 C 0.097 3.903 4 H 0.050 0.950 5 C 0.018 3.982 6 N -0.554 5.554 7 C 0.073 3.927 8 C 0.021 3.979 9 H 0.115 0.885 10 C 0.266 3.734 11 N -0.512 5.512 12 C 0.038 3.962 13 C -0.538 4.538 14 H 0.054 0.946 15 C 0.012 3.988 16 N -0.923 5.923 17 Si 0.948 3.052 18 H -0.269 1.269 19 H -0.285 1.285 20 H -0.272 1.272 21 C 0.026 3.974 22 C 0.094 3.906 23 H 0.051 0.949 24 C -0.110 4.110 25 C -0.145 4.145 26 O -0.381 6.381 27 H 0.066 0.934 28 H 0.052 0.948 29 H 0.049 0.951 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.051 0.949 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.002 0.998 37 H 0.035 0.965 38 H 0.264 0.736 39 H 0.049 0.951 40 H 0.089 0.911 41 H 0.071 0.929 42 H 0.089 0.911 43 H 0.050 0.950 44 H 0.051 0.949 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.280 -2.341 12.898 21.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.150 4.150 3 C 0.039 3.961 4 H 0.068 0.932 5 C -0.110 4.110 6 N -0.278 5.278 7 C -0.055 4.055 8 C 0.000 4.000 9 H 0.133 0.867 10 C -0.050 4.050 11 N -0.189 5.189 12 C 0.000 4.000 13 C -0.576 4.576 14 H 0.072 0.928 15 C -0.187 4.187 16 N -0.563 5.563 17 Si 0.774 3.226 18 H -0.194 1.194 19 H -0.211 1.211 20 H -0.198 1.198 21 C -0.102 4.102 22 C 0.036 3.964 23 H 0.069 0.931 24 C -0.148 4.148 25 C -0.202 4.202 26 O -0.300 6.300 27 H 0.085 0.915 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.091 0.909 31 H 0.105 0.895 32 H 0.069 0.931 33 H 0.105 0.895 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.021 0.979 37 H 0.053 0.947 38 H 0.073 0.927 39 H 0.067 0.933 40 H 0.108 0.892 41 H 0.090 0.910 42 H 0.108 0.892 43 H 0.069 0.931 44 H 0.070 0.930 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -18.088 -1.039 11.560 21.492 hybrid contribution 1.478 -0.690 -0.454 1.693 sum -16.611 -1.729 11.106 20.056 Atomic orbital electron populations 1.21656 0.94708 1.02072 1.01678 1.21533 0.97118 0.92965 1.03430 1.22185 0.92378 0.94813 0.86741 0.93201 1.22928 0.96235 0.89140 1.02650 1.62187 1.12437 1.18329 1.34872 1.22076 0.87018 1.02600 0.93843 1.19184 0.96935 0.94578 0.89342 0.86729 1.29288 0.90284 0.92914 0.92510 1.80976 1.13080 1.12551 1.12337 1.18991 0.87604 0.96774 0.96664 1.21557 0.92080 1.42609 1.01360 0.92813 1.25709 0.96729 0.95794 1.00480 1.70038 1.00243 1.48863 1.37139 0.85642 0.78326 0.78269 0.80337 1.19351 1.21149 1.19753 1.22831 0.96710 1.00731 0.89953 1.22230 0.91873 0.83501 0.98758 0.93087 1.21517 0.97455 1.01328 0.94489 1.21666 0.94905 1.01722 1.01942 1.87939 1.76888 1.26372 1.38841 0.91514 0.92839 0.93197 0.90874 0.89502 0.93051 0.89468 0.90154 0.91264 0.97944 0.94678 0.92694 0.93251 0.89242 0.90994 0.89206 0.93115 0.93033 0.91462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.41 9.81 71.98 0.71 -1.70 16 2 C -0.11 -2.04 5.64 30.60 0.17 -1.87 16 3 C 0.10 2.17 2.80 30.63 0.09 2.26 16 4 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 5 C 0.02 0.44 4.72 86.31 0.41 0.85 16 6 N -0.55 -14.61 4.39 -895.24 -3.93 -18.54 16 7 C 0.07 2.11 4.33 86.30 0.37 2.48 16 8 C 0.02 0.77 2.12 -12.60 -0.03 0.74 16 9 H 0.12 3.81 6.35 -2.39 -0.02 3.80 16 10 C 0.27 11.05 13.64 89.44 1.22 12.27 16 11 N -0.51 -23.23 18.54 20.01 0.37 -22.86 16 12 C 0.04 1.77 4.42 29.85 0.13 1.90 16 13 C -0.54 -28.40 8.60 25.60 0.22 -28.18 16 14 H 0.05 2.82 7.59 -2.91 -0.02 2.80 16 15 C 0.01 0.65 5.46 84.66 0.46 1.11 16 16 N -0.92 -52.74 13.29 21.45 0.28 -52.45 16 17 Si 0.95 43.28 29.54 68.60 2.03 45.30 16 18 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 19 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 20 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 21 C 0.03 0.57 4.93 86.31 0.43 0.99 16 22 C 0.09 2.00 2.80 30.63 0.09 2.08 16 23 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 24 C -0.11 -1.78 5.65 30.59 0.17 -1.61 16 25 C -0.14 -2.23 9.81 71.98 0.71 -1.52 16 26 O -0.38 -8.73 9.21 -148.98 -1.37 -10.11 16 27 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.05 0.97 7.83 -2.39 -0.02 0.95 16 29 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.09 2.13 6.30 -2.39 -0.02 2.11 16 34 H 0.08 2.33 8.04 -2.39 -0.02 2.31 16 35 H 0.07 1.81 8.12 -2.39 -0.02 1.79 16 36 H 0.00 0.11 8.14 -2.38 -0.02 0.09 16 37 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 39 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.09 1.86 8.09 -2.39 -0.02 1.84 16 41 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 43 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.05 0.90 7.83 -2.39 -0.02 0.88 16 45 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 Total: -1.00 -62.53 363.47 3.45 -59.08 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: 0.93 Total: 9.76 kcal Atomic # 6 Polarization: -15.34 SS G_CDS: 5.14 Total: -10.19 kcal Atomic # 7 Polarization: -90.57 SS G_CDS: -3.28 Total: -93.85 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: -1.37 Total: -10.11 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.30 kcal Total: -62.53 3.45 -59.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420940906.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.115 kcal (2) G-P(sol) polarization free energy of solvation -62.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds