Wall clock time and date at job start Tue Mar 31 2020 02:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47165 * 2 1 4 4 C 1.50693 * 109.47164 * 120.00741 * 2 1 3 5 5 H 1.08000 * 120.00569 * 118.04702 * 4 2 1 6 6 C 1.37883 * 119.99892 * 298.04102 * 4 2 1 7 7 N 1.31517 * 119.99812 * 2.89962 * 6 4 2 8 8 Si 1.86795 * 120.00033 * 182.89134 * 6 4 2 9 9 H 1.48503 * 109.47152 * 84.99409 * 8 6 4 10 10 H 1.48497 * 109.47596 * 324.99705 * 8 6 4 11 11 H 1.48499 * 109.47345 * 204.99136 * 8 6 4 12 12 C 1.53009 * 109.46769 * 240.00310 * 2 1 3 13 13 N 1.46504 * 109.47047 * 60.00145 * 12 2 1 14 14 C 1.34771 * 119.99846 * 179.97438 * 13 12 2 15 15 O 1.21588 * 119.99967 * 0.02562 * 14 13 12 16 16 N 1.34780 * 119.99803 * 179.97438 * 14 13 12 17 17 C 1.46503 * 119.99790 * 179.97438 * 16 14 13 18 18 H 1.09000 * 115.55034 * 9.42436 * 17 16 14 19 19 C 1.52997 * 117.49948 * 223.75084 * 17 16 14 20 20 C 1.52997 * 117.49527 * 155.09019 * 17 16 14 21 21 H 1.09002 * 117.50171 * 0.02562 * 20 17 16 22 22 C 1.53007 * 117.49919 * 214.98063 * 20 17 16 23 23 C 1.53781 * 113.61500 * 159.13650 * 22 20 17 24 24 C 1.53950 * 87.01714 * 220.04988 * 23 22 20 25 25 C 1.53773 * 87.11469 * 25.36218 * 24 23 22 26 26 H 1.09001 * 109.46690 * 300.00008 * 1 2 3 27 27 H 1.08999 * 109.47466 * 59.99508 * 1 2 3 28 28 H 1.08997 * 109.47625 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46489 * 174.05881 * 3 2 1 30 30 H 1.08992 * 109.47480 * 294.05831 * 3 2 1 31 31 H 1.08993 * 109.46657 * 54.06367 * 3 2 1 32 32 H 0.96997 * 119.99974 * 179.97438 * 7 6 4 33 33 H 1.09001 * 109.46688 * 179.97438 * 12 2 1 34 34 H 1.08997 * 109.46815 * 300.00211 * 12 2 1 35 35 H 0.96994 * 119.99711 * 359.97438 * 13 12 2 36 36 H 0.96999 * 120.00276 * 0.02562 * 16 14 13 37 37 H 1.08998 * 117.50072 * 0.02562 * 19 17 16 38 38 H 1.09002 * 117.49766 * 145.02443 * 19 17 16 39 39 H 1.09003 * 112.84846 * 290.33666 * 22 20 17 40 40 H 1.08999 * 113.61242 * 334.57225 * 23 22 20 41 41 H 1.09005 * 113.61242 * 105.47107 * 23 22 20 42 42 H 1.08998 * 113.53817 * 270.80776 * 24 23 22 43 43 H 1.09005 * 113.66798 * 139.93720 * 24 23 22 44 44 H 1.09000 * 113.61545 * 220.08497 * 25 24 23 45 45 H 1.09004 * 113.68645 * 89.19832 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6269 -1.6067 1.1315 6 6 1.7328 -0.2165 2.4823 7 7 0.9616 0.8418 2.6044 8 14 2.4223 -1.0504 4.0049 9 1 3.7850 -0.5286 4.2810 10 1 2.4903 -2.5165 3.7785 11 1 1.5401 -0.7692 5.1658 12 6 2.0399 -0.7212 -1.2494 13 7 1.5515 -0.0305 -2.4455 14 6 1.8775 -0.4906 -3.6696 15 8 2.5765 -1.4792 -3.7812 16 7 1.4278 0.1446 -4.7700 17 6 1.7826 -0.3553 -6.1006 18 1 2.2744 -1.3277 -6.1218 19 6 2.2046 0.6729 -7.1521 20 6 0.8409 -0.0145 -7.2574 21 1 -0.0423 0.5818 -7.0285 22 6 0.6622 -1.0647 -8.3557 23 6 -0.6273 -0.8865 -9.1744 24 6 -0.7630 -2.4197 -9.1438 25 6 0.0677 -2.3897 -7.8501 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1248 1.4442 0.1064 30 1 1.7662 1.9247 -0.9383 31 1 1.5925 1.9860 0.8320 32 1 0.7507 1.1891 3.4851 33 1 3.1299 -0.7208 -1.2496 34 1 1.6765 -1.7488 -1.2494 35 1 0.9937 0.7579 -2.3564 36 1 0.8699 0.9330 -4.6809 37 1 2.2187 1.7212 -6.8538 38 1 2.9738 0.3767 -7.8653 39 1 1.5546 -1.1922 -8.9686 40 1 -1.4190 -0.3672 -8.6345 41 1 -0.4584 -0.4820 -10.1725 42 1 -0.2613 -2.9178 -9.9734 43 1 -1.7864 -2.7656 -8.9978 44 1 0.7966 -3.1971 -7.7805 45 1 -0.5327 -2.2824 -6.9466 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425558662.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:13:22 Heat of formation + Delta-G solvation = 0.221486 kcal Electronic energy + Delta-G solvation = -21956.214656 eV Core-core repulsion = 18781.701624 eV Total energy + Delta-G solvation = -3174.513032 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.97547 -39.08882 -36.86250 -36.00677 -33.32338 -32.39067 -30.58664 -26.32472 -25.78410 -25.71286 -25.54025 -24.79116 -22.09543 -21.15595 -20.57862 -19.58868 -18.76819 -18.07612 -16.43773 -15.84221 -15.68758 -15.22038 -14.93152 -14.66067 -14.35936 -13.67321 -13.42361 -12.96408 -12.85999 -12.68009 -12.63468 -12.43457 -12.16142 -12.11745 -11.45769 -11.19699 -11.17451 -10.97128 -10.84487 -10.79247 -10.67956 -10.46863 -10.34790 -10.20795 -9.91522 -9.77201 -9.60677 -9.29670 -8.77147 -8.69820 -8.39574 -8.13971 -6.01136 -4.10232 2.99269 3.30041 3.36366 3.40487 3.41649 3.88357 4.32495 4.40367 4.48337 4.51849 4.65280 4.75067 4.87808 4.91328 5.03904 5.22509 5.26154 5.49325 5.56609 5.58569 5.63848 5.69621 5.82513 5.88772 5.96047 6.07767 6.23316 6.31304 6.38412 6.52623 6.69640 6.81821 6.83868 6.92274 7.04736 7.10480 7.31942 7.42823 7.57611 7.71748 8.01522 8.13299 8.39034 8.48906 8.89531 9.04869 9.55285 11.00901 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.035996 B = 0.002911 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.676673 B = 9614.756705 C = 9735.393304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.056 3.944 3 C -0.129 4.129 4 C -0.506 4.506 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.893 3.107 9 H -0.280 1.280 10 H -0.274 1.274 11 H -0.288 1.288 12 C 0.150 3.850 13 N -0.732 5.732 14 C 0.701 3.299 15 O -0.598 6.598 16 N -0.725 5.725 17 C 0.117 3.883 18 H 0.136 0.864 19 C -0.195 4.195 20 C -0.154 4.154 21 H 0.105 0.895 22 C -0.078 4.078 23 C -0.133 4.133 24 C -0.145 4.145 25 C -0.134 4.134 26 H 0.084 0.916 27 H 0.005 0.995 28 H 0.026 0.974 29 H 0.029 0.971 30 H 0.005 0.995 31 H 0.082 0.918 32 H 0.260 0.740 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.393 0.607 36 H 0.394 0.606 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.091 0.909 40 H 0.080 0.920 41 H 0.065 0.935 42 H 0.078 0.922 43 H 0.066 0.934 44 H 0.067 0.933 45 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.483 0.889 -20.485 20.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.056 3.944 3 C -0.186 4.186 4 C -0.545 4.545 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.206 1.206 10 H -0.199 1.199 11 H -0.213 1.213 12 C 0.027 3.973 13 N -0.386 5.386 14 C 0.401 3.599 15 O -0.477 6.477 16 N -0.378 5.378 17 C 0.010 3.990 18 H 0.154 0.846 19 C -0.234 4.234 20 C -0.174 4.174 21 H 0.123 0.877 22 C -0.097 4.097 23 C -0.171 4.171 24 C -0.183 4.183 25 C -0.172 4.172 26 H 0.103 0.897 27 H 0.024 0.976 28 H 0.046 0.954 29 H 0.048 0.952 30 H 0.024 0.976 31 H 0.100 0.900 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.228 0.772 36 H 0.227 0.773 37 H 0.113 0.887 38 H 0.117 0.883 39 H 0.109 0.891 40 H 0.099 0.901 41 H 0.083 0.917 42 H 0.096 0.904 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -2.905 0.063 -20.348 20.555 hybrid contribution -0.173 0.479 0.917 1.049 sum -3.078 0.542 -19.431 19.681 Atomic orbital electron populations 1.21826 0.97817 0.99144 0.99914 1.18359 0.92752 0.92761 0.90567 1.21809 0.99387 0.98519 0.98914 1.20981 1.32896 1.10716 0.89898 0.92397 1.24879 0.94777 0.95000 0.98830 1.69822 1.36211 1.23243 1.23235 0.86585 0.78898 0.79965 0.82408 1.20642 1.19944 1.21338 1.21586 0.97923 0.95411 0.82339 1.45514 1.55533 1.33041 1.04560 1.16015 0.80397 0.82923 0.80581 1.90874 1.43067 1.27716 1.85997 1.44526 1.56559 1.32797 1.03943 1.21374 1.01146 0.98613 0.77906 0.84635 1.23625 0.97748 0.98899 1.03146 1.22861 0.94471 1.01267 0.98752 0.87701 1.22117 0.97817 0.94293 0.95468 1.22976 0.97574 0.96442 1.00059 1.22856 1.00507 0.96545 0.98362 1.22918 0.99417 0.97159 0.97680 0.89709 0.97607 0.95445 0.95204 0.97570 0.89952 0.93037 0.92907 0.92925 0.77197 0.77256 0.88718 0.88257 0.89126 0.90122 0.91664 0.90379 0.91553 0.91462 0.89843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.92 8.10 37.16 0.30 -2.62 16 2 C 0.06 1.31 0.50 -155.66 -0.08 1.24 16 3 C -0.13 -2.91 8.04 37.16 0.30 -2.61 16 4 C -0.51 -13.36 8.01 -34.44 -0.28 -13.63 16 5 H 0.06 1.54 7.75 -52.49 -0.41 1.14 16 6 C 0.07 1.75 5.14 -17.82 -0.09 1.66 16 7 N -0.89 -23.71 9.43 55.43 0.52 -23.19 16 8 Si 0.89 20.84 29.54 -169.99 -5.02 15.81 16 9 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 10 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 12 C 0.15 3.26 4.50 -4.04 -0.02 3.24 16 13 N -0.73 -13.31 4.91 -65.22 -0.32 -13.63 16 14 C 0.70 12.69 8.57 -86.92 -0.74 11.95 16 15 O -0.60 -13.17 15.91 5.29 0.08 -13.08 16 16 N -0.72 -9.75 5.57 -58.68 -0.33 -10.08 16 17 C 0.12 1.40 5.98 -67.93 -0.41 1.00 16 18 H 0.14 1.90 7.40 -51.93 -0.38 1.52 16 19 C -0.20 -1.84 10.15 -26.69 -0.27 -2.11 16 20 C -0.15 -1.40 5.46 -90.58 -0.49 -1.90 16 21 H 0.10 0.91 7.98 -51.93 -0.41 0.50 16 22 C -0.08 -0.65 3.87 -89.80 -0.35 -1.00 16 23 C -0.13 -0.98 7.65 -25.83 -0.20 -1.18 16 24 C -0.15 -1.10 8.09 -25.83 -0.21 -1.31 16 25 C -0.13 -1.22 7.49 -25.92 -0.19 -1.41 16 26 H 0.08 2.12 6.12 -51.93 -0.32 1.80 16 27 H 0.00 0.10 6.86 -51.93 -0.36 -0.26 16 28 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.01 0.11 6.71 -51.93 -0.35 -0.24 16 31 H 0.08 2.04 6.22 -51.93 -0.32 1.72 16 32 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 33 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.39 6.38 6.17 -40.82 -0.25 6.13 16 36 H 0.39 4.25 8.84 -40.82 -0.36 3.89 16 37 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.10 0.85 8.13 -51.93 -0.42 0.43 16 39 H 0.09 0.72 8.07 -51.93 -0.42 0.30 16 40 H 0.08 0.59 7.98 -51.93 -0.41 0.18 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.08 0.85 8.10 -51.93 -0.42 0.43 16 LS Contribution 356.13 15.07 5.37 5.37 Total: -1.00 -28.98 356.13 -10.20 -39.18 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -7.78 Total: 8.31 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: -2.73 Total: -8.68 kcal Atomic # 7 Polarization: -46.78 SS G_CDS: -0.12 Total: -46.90 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: 0.08 Total: -13.08 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -28.98 -10.20 -39.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425558662.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.402 kcal (2) G-P(sol) polarization free energy of solvation -28.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds