Wall clock time and date at job start Tue Mar 31 2020 02:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47165 * 2 1 4 4 C 1.50693 * 109.47164 * 120.00741 * 2 1 3 5 5 H 1.08000 * 120.00569 * 118.04702 * 4 2 1 6 6 C 1.37883 * 119.99892 * 298.04102 * 4 2 1 7 7 N 1.31517 * 119.99812 * 2.89962 * 6 4 2 8 8 Si 1.86795 * 120.00033 * 182.89134 * 6 4 2 9 9 H 1.48503 * 109.47152 * 84.99409 * 8 6 4 10 10 H 1.48497 * 109.47596 * 324.99705 * 8 6 4 11 11 H 1.48499 * 109.47345 * 204.99136 * 8 6 4 12 12 C 1.53009 * 109.46769 * 240.00310 * 2 1 3 13 13 N 1.46504 * 109.47047 * 60.00145 * 12 2 1 14 14 C 1.34771 * 119.99846 * 179.97438 * 13 12 2 15 15 O 1.21588 * 119.99967 * 0.02562 * 14 13 12 16 16 N 1.34780 * 119.99803 * 179.97438 * 14 13 12 17 17 C 1.46503 * 119.99790 * 179.97438 * 16 14 13 18 18 H 1.09000 * 115.55034 * 9.42436 * 17 16 14 19 19 C 1.52997 * 117.49948 * 223.75084 * 17 16 14 20 20 C 1.52997 * 117.49527 * 155.09019 * 17 16 14 21 21 H 1.09002 * 117.50171 * 0.02562 * 20 17 16 22 22 C 1.53007 * 117.49919 * 214.98063 * 20 17 16 23 23 C 1.53781 * 113.61500 * 159.13650 * 22 20 17 24 24 C 1.53950 * 87.01714 * 220.04988 * 23 22 20 25 25 C 1.53773 * 87.11469 * 25.36218 * 24 23 22 26 26 H 1.09001 * 109.46690 * 300.00008 * 1 2 3 27 27 H 1.08999 * 109.47466 * 59.99508 * 1 2 3 28 28 H 1.08997 * 109.47625 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46489 * 174.05881 * 3 2 1 30 30 H 1.08992 * 109.47480 * 294.05831 * 3 2 1 31 31 H 1.08993 * 109.46657 * 54.06367 * 3 2 1 32 32 H 0.96997 * 119.99974 * 179.97438 * 7 6 4 33 33 H 1.09001 * 109.46688 * 179.97438 * 12 2 1 34 34 H 1.08997 * 109.46815 * 300.00211 * 12 2 1 35 35 H 0.96994 * 119.99711 * 359.97438 * 13 12 2 36 36 H 0.96999 * 120.00276 * 0.02562 * 16 14 13 37 37 H 1.08998 * 117.50072 * 0.02562 * 19 17 16 38 38 H 1.09002 * 117.49766 * 145.02443 * 19 17 16 39 39 H 1.09003 * 112.84846 * 290.33666 * 22 20 17 40 40 H 1.08999 * 113.61242 * 334.57225 * 23 22 20 41 41 H 1.09005 * 113.61242 * 105.47107 * 23 22 20 42 42 H 1.08998 * 113.53817 * 270.80776 * 24 23 22 43 43 H 1.09005 * 113.66798 * 139.93720 * 24 23 22 44 44 H 1.09000 * 113.61545 * 220.08497 * 25 24 23 45 45 H 1.09004 * 113.68645 * 89.19832 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6269 -1.6067 1.1315 6 6 1.7328 -0.2165 2.4823 7 7 0.9616 0.8418 2.6044 8 14 2.4223 -1.0504 4.0049 9 1 3.7850 -0.5286 4.2810 10 1 2.4903 -2.5165 3.7785 11 1 1.5401 -0.7692 5.1658 12 6 2.0399 -0.7212 -1.2494 13 7 1.5515 -0.0305 -2.4455 14 6 1.8775 -0.4906 -3.6696 15 8 2.5765 -1.4792 -3.7812 16 7 1.4278 0.1446 -4.7700 17 6 1.7826 -0.3553 -6.1006 18 1 2.2744 -1.3277 -6.1218 19 6 2.2046 0.6729 -7.1521 20 6 0.8409 -0.0145 -7.2574 21 1 -0.0423 0.5818 -7.0285 22 6 0.6622 -1.0647 -8.3557 23 6 -0.6273 -0.8865 -9.1744 24 6 -0.7630 -2.4197 -9.1438 25 6 0.0677 -2.3897 -7.8501 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1248 1.4442 0.1064 30 1 1.7662 1.9247 -0.9383 31 1 1.5925 1.9860 0.8320 32 1 0.7507 1.1891 3.4851 33 1 3.1299 -0.7208 -1.2496 34 1 1.6765 -1.7488 -1.2494 35 1 0.9937 0.7579 -2.3564 36 1 0.8699 0.9330 -4.6809 37 1 2.2187 1.7212 -6.8538 38 1 2.9738 0.3767 -7.8653 39 1 1.5546 -1.1922 -8.9686 40 1 -1.4190 -0.3672 -8.6345 41 1 -0.4584 -0.4820 -10.1725 42 1 -0.2613 -2.9178 -9.9734 43 1 -1.7864 -2.7656 -8.9978 44 1 0.7966 -3.1971 -7.7805 45 1 -0.5327 -2.2824 -6.9466 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000425558662.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:13:21 Heat of formation + Delta-G solvation = -16.010199 kcal Electronic energy + Delta-G solvation = -21956.918515 eV Core-core repulsion = 18781.701624 eV Total energy + Delta-G solvation = -3175.216891 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.18308 -40.05821 -38.30920 -37.25037 -35.01939 -33.75944 -32.32732 -27.56019 -27.50397 -27.09308 -26.46150 -26.40905 -23.18711 -21.92035 -21.87462 -20.58089 -20.31768 -19.45937 -17.78346 -17.52665 -16.68027 -16.44644 -16.37337 -16.06244 -15.63993 -15.16509 -14.72294 -14.68475 -14.25760 -14.00161 -13.38092 -13.32852 -13.27377 -13.21604 -13.09097 -12.87871 -12.68491 -12.59443 -12.25256 -12.14248 -12.06099 -11.73035 -11.47593 -11.45329 -11.36810 -11.16402 -11.14220 -10.70078 -10.63570 -10.40214 -10.07917 -9.42548 -8.02451 -6.17249 1.43375 1.45643 1.53379 1.73578 2.12056 2.46619 2.93655 3.21657 3.32188 3.66933 3.79512 3.84684 3.98753 4.13427 4.19218 4.28106 4.42116 4.52372 4.53938 4.70811 4.80147 4.90355 4.92257 4.94415 4.98271 5.04413 5.06195 5.11262 5.12293 5.15094 5.20330 5.26971 5.38379 5.41980 5.60659 5.63884 5.67153 5.67918 5.68503 6.07919 6.14877 6.22000 6.43700 6.86917 7.15781 7.50241 7.63435 8.97116 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.035996 B = 0.002911 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.676673 B = 9614.756705 C = 9735.393304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.053 3.947 3 C -0.118 4.118 4 C -0.531 4.531 5 H 0.044 0.956 6 C 0.029 3.971 7 N -0.899 5.899 8 Si 0.945 3.055 9 H -0.278 1.278 10 H -0.276 1.276 11 H -0.282 1.282 12 C 0.168 3.832 13 N -0.725 5.725 14 C 0.699 3.301 15 O -0.641 6.641 16 N -0.705 5.705 17 C 0.082 3.918 18 H 0.109 0.891 19 C -0.177 4.177 20 C -0.131 4.131 21 H 0.117 0.883 22 C -0.080 4.080 23 C -0.126 4.126 24 C -0.141 4.141 25 C -0.144 4.144 26 H 0.062 0.938 27 H 0.036 0.964 28 H 0.017 0.983 29 H 0.017 0.983 30 H 0.037 0.963 31 H 0.061 0.939 32 H 0.260 0.740 33 H 0.035 0.965 34 H 0.034 0.966 35 H 0.405 0.595 36 H 0.410 0.590 37 H 0.106 0.894 38 H 0.109 0.891 39 H 0.097 0.903 40 H 0.083 0.917 41 H 0.077 0.923 42 H 0.086 0.914 43 H 0.068 0.932 44 H 0.057 0.943 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.179 2.120 -22.288 22.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.052 3.948 3 C -0.176 4.176 4 C -0.569 4.569 5 H 0.062 0.938 6 C -0.171 4.171 7 N -0.538 5.538 8 Si 0.772 3.228 9 H -0.204 1.204 10 H -0.201 1.201 11 H -0.208 1.208 12 C 0.043 3.957 13 N -0.380 5.380 14 C 0.399 3.601 15 O -0.523 6.523 16 N -0.359 5.359 17 C -0.025 4.025 18 H 0.127 0.873 19 C -0.215 4.215 20 C -0.151 4.151 21 H 0.135 0.865 22 C -0.099 4.099 23 C -0.163 4.163 24 C -0.179 4.179 25 C -0.181 4.181 26 H 0.081 0.919 27 H 0.055 0.945 28 H 0.036 0.964 29 H 0.036 0.964 30 H 0.056 0.944 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.242 0.758 36 H 0.247 0.753 37 H 0.124 0.876 38 H 0.128 0.872 39 H 0.116 0.884 40 H 0.101 0.899 41 H 0.096 0.904 42 H 0.105 0.895 43 H 0.087 0.913 44 H 0.076 0.924 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.634 1.340 -22.193 22.529 hybrid contribution 0.043 0.075 1.411 1.414 sum -3.590 1.415 -20.782 21.138 Atomic orbital electron populations 1.21664 0.97101 0.98614 1.00307 1.18347 0.93246 0.93028 0.90151 1.21652 0.98319 0.97911 0.99720 1.21273 1.33230 1.10792 0.91627 0.93751 1.25448 0.95097 0.95618 1.00924 1.69920 1.36487 1.23741 1.23646 0.85776 0.78351 0.78938 0.79759 1.20429 1.20129 1.20794 1.21118 0.96697 0.94635 0.83207 1.45191 1.55785 1.33232 1.03823 1.16139 0.80096 0.82615 0.81259 1.90847 1.45073 1.29792 1.86635 1.44302 1.55715 1.32607 1.03260 1.21433 1.04317 0.98840 0.77871 0.87274 1.23698 0.98099 0.98637 1.01113 1.22909 0.94712 1.00808 0.96662 0.86509 1.22190 0.98758 0.93479 0.95445 1.22950 0.96717 0.96156 1.00495 1.22865 1.00387 0.97083 0.97545 1.22925 0.99599 0.97570 0.98034 0.91924 0.94469 0.96388 0.96392 0.94377 0.91995 0.93023 0.94665 0.94732 0.75772 0.75327 0.87570 0.87227 0.88439 0.89859 0.90382 0.89494 0.91338 0.92424 0.91305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.31 8.10 71.98 0.58 -4.73 16 2 C 0.05 2.47 0.50 -52.93 -0.03 2.45 16 3 C -0.12 -5.27 8.04 71.98 0.58 -4.70 16 4 C -0.53 -28.40 8.01 25.60 0.21 -28.19 16 5 H 0.04 2.43 7.75 -2.91 -0.02 2.41 16 6 C 0.03 1.54 5.14 84.66 0.44 1.97 16 7 N -0.90 -48.13 9.43 21.45 0.20 -47.93 16 8 Si 0.95 42.90 29.54 68.60 2.03 44.93 16 9 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 10 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 11 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 12 C 0.17 7.35 4.50 86.38 0.39 7.74 16 13 N -0.73 -25.71 4.91 -478.52 -2.35 -28.06 16 14 C 0.70 25.02 8.57 179.06 1.53 26.55 16 15 O -0.64 -28.82 15.91 -3.99 -0.06 -28.88 16 16 N -0.70 -17.94 5.57 -457.82 -2.55 -20.49 16 17 C 0.08 1.87 5.98 44.99 0.27 2.14 16 18 H 0.11 3.13 7.40 -2.39 -0.02 3.11 16 19 C -0.18 -2.85 10.15 30.62 0.31 -2.54 16 20 C -0.13 -2.09 5.46 -10.77 -0.06 -2.14 16 21 H 0.12 1.63 7.98 -2.39 -0.02 1.61 16 22 C -0.08 -1.18 3.87 -10.27 -0.04 -1.22 16 23 C -0.13 -1.52 7.65 31.18 0.24 -1.28 16 24 C -0.14 -1.89 8.09 31.18 0.25 -1.63 16 25 C -0.14 -2.50 7.49 31.12 0.23 -2.27 16 26 H 0.06 3.10 6.12 -2.39 -0.01 3.08 16 27 H 0.04 1.38 6.86 -2.39 -0.02 1.36 16 28 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 30 H 0.04 1.41 6.71 -2.39 -0.02 1.39 16 31 H 0.06 3.03 6.22 -2.39 -0.01 3.02 16 32 H 0.26 13.41 8.31 -92.71 -0.77 12.64 16 33 H 0.03 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 35 H 0.41 12.25 6.17 -92.71 -0.57 11.68 16 36 H 0.41 7.76 8.84 -92.71 -0.82 6.94 16 37 H 0.11 1.52 8.14 -2.39 -0.02 1.51 16 38 H 0.11 1.57 8.13 -2.39 -0.02 1.55 16 39 H 0.10 1.32 8.07 -2.39 -0.02 1.30 16 40 H 0.08 0.98 7.98 -2.39 -0.02 0.96 16 41 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 42 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 44 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.07 1.39 8.10 -2.38 -0.02 1.37 16 Total: -1.00 -63.04 356.13 1.75 -61.29 By element: Atomic # 1 Polarization: 27.41 SS G_CDS: -0.41 Total: 26.99 kcal Atomic # 6 Polarization: -12.75 SS G_CDS: 4.90 Total: -7.84 kcal Atomic # 7 Polarization: -91.78 SS G_CDS: -4.70 Total: -96.48 kcal Atomic # 8 Polarization: -28.82 SS G_CDS: -0.06 Total: -28.88 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -63.04 1.75 -61.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425558662.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.278 kcal (2) G-P(sol) polarization free energy of solvation -63.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds