Wall clock time and date at job start Tue Mar 31 2020 02:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47657 * 2 1 4 4 H 1.09004 * 110.05817 * 53.57785 * 3 2 1 5 5 C 1.54269 * 110.02916 * 292.16626 * 3 2 1 6 6 C 1.54883 * 104.19631 * 217.10133 * 5 3 2 7 7 C 1.54888 * 102.74877 * 37.94023 * 6 5 3 8 8 C 1.53874 * 110.03828 * 174.99732 * 3 2 1 9 9 H 1.08995 * 110.07620 * 238.59110 * 8 3 2 10 10 N 1.46507 * 110.02782 * 0.02562 * 8 3 2 11 11 C 1.34770 * 119.99682 * 203.61715 * 10 8 3 12 12 O 1.21589 * 120.00144 * 0.02562 * 11 10 8 13 13 N 1.34782 * 120.00015 * 180.02562 * 11 10 8 14 14 C 1.46504 * 120.00162 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.46926 * 174.90709 * 14 13 11 16 16 C 1.50701 * 115.54978 * 304.53658 * 15 14 13 17 17 H 1.07993 * 119.99983 * 95.20082 * 16 15 14 18 18 C 1.37881 * 119.99612 * 275.20432 * 16 15 14 19 19 N 1.31513 * 120.00391 * 5.98659 * 18 16 15 20 20 Si 1.86800 * 119.99755 * 185.98982 * 18 16 15 21 21 H 1.48503 * 109.47200 * 59.99688 * 20 18 16 22 22 H 1.48502 * 109.47083 * 300.00062 * 20 18 16 23 23 H 1.48498 * 109.47457 * 179.97438 * 20 18 16 24 24 C 1.52996 * 117.49826 * 90.20877 * 15 14 13 25 25 C 1.52996 * 117.49615 * 158.86831 * 15 14 13 26 26 H 1.09000 * 109.47022 * 60.00003 * 1 2 3 27 27 H 1.08994 * 109.47502 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47013 * 300.00261 * 1 2 3 29 29 H 1.08999 * 109.47013 * 239.99739 * 2 1 3 30 30 H 1.09008 * 109.46804 * 119.99784 * 2 1 3 31 31 H 1.09006 * 110.48381 * 98.42437 * 5 3 2 32 32 H 1.08993 * 110.60296 * 335.83674 * 5 3 2 33 33 H 1.08999 * 110.76020 * 279.62993 * 6 5 3 34 34 H 1.08995 * 110.91681 * 156.33541 * 6 5 3 35 35 H 1.09006 * 110.49099 * 203.37912 * 7 6 5 36 36 H 1.09007 * 110.59562 * 80.79278 * 7 6 5 37 37 H 0.97002 * 120.00060 * 23.62411 * 10 8 3 38 38 H 0.97000 * 119.99890 * 359.97438 * 13 11 10 39 39 H 1.09004 * 109.46846 * 54.90184 * 14 13 11 40 40 H 1.09000 * 109.46922 * 294.90649 * 14 13 11 41 41 H 0.97001 * 120.00086 * 5.35553 * 19 18 16 42 42 H 1.08999 * 117.49637 * 214.99731 * 24 15 14 43 43 H 1.08998 * 117.49888 * 0.02562 * 24 15 14 44 44 H 1.09005 * 117.50223 * 359.97225 * 25 15 14 45 45 H 1.08998 * 117.50272 * 144.97148 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5916 1.9976 0.8239 5 6 1.7007 2.1229 -1.3423 6 6 2.9290 3.0199 -1.6346 7 6 4.1125 2.1495 -1.1440 8 6 3.5735 1.4593 0.1261 9 1 3.8700 2.0221 1.0112 10 7 4.0854 0.0890 0.2077 11 6 5.2806 -0.1507 0.7826 12 8 5.9337 0.7702 1.2339 13 7 5.7518 -1.4112 0.8572 14 6 7.0507 -1.6719 1.4827 15 6 7.2898 -3.1815 1.5515 16 6 6.2181 -3.9781 2.2502 17 1 5.4300 -4.4426 1.6764 18 6 6.2440 -4.1137 3.6221 19 7 7.1328 -3.4531 4.3316 20 14 5.0167 -5.2357 4.4730 21 1 5.1847 -6.6236 3.9720 22 1 3.6367 -4.7691 4.1845 23 1 5.2532 -5.2071 5.9387 24 6 7.9993 -3.8391 0.3663 25 6 8.7351 -3.6619 1.6968 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8901 31 1 0.7999 2.7291 -1.2456 32 1 1.5759 1.3787 -2.1288 33 1 2.8723 3.9493 -1.0681 34 1 3.0162 3.2246 -2.7017 35 1 4.9719 2.7750 -0.9027 36 1 4.3808 1.4079 -1.8965 37 1 3.5642 -0.6457 -0.1521 38 1 5.2305 -2.1459 0.4975 39 1 7.0587 -1.2563 2.4903 40 1 7.8388 -1.2058 0.8912 41 1 7.7187 -2.8120 3.8997 42 1 7.6911 -4.8480 0.0919 43 1 8.2962 -3.1963 -0.4623 44 1 9.5157 -2.9025 1.7429 45 1 8.9110 -4.5538 2.2981 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430839123.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:43:13 Heat of formation + Delta-G solvation = -31.058976 kcal Electronic energy + Delta-G solvation = -22698.524821 eV Core-core repulsion = 19522.655366 eV Total energy + Delta-G solvation = -3175.869455 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.03249 -38.32583 -36.88952 -33.48488 -33.24245 -33.03691 -31.90823 -27.85734 -27.69596 -25.64576 -24.72628 -23.11391 -21.39048 -20.87423 -20.51280 -19.64356 -18.99544 -17.90426 -16.66440 -16.02423 -15.62763 -14.91164 -14.73626 -14.60070 -14.11607 -13.78949 -13.75926 -13.30640 -13.23898 -12.86500 -12.62415 -12.41737 -12.27165 -11.91991 -11.62389 -11.41943 -11.11975 -10.98726 -10.93249 -10.79512 -10.74318 -10.57782 -10.49604 -10.46112 -10.14560 -9.74265 -9.50383 -8.79299 -8.62964 -8.53519 -8.37923 -7.99921 -6.36805 -4.14029 3.26135 3.40194 3.41192 3.60289 3.80986 4.39679 4.47859 4.52485 4.60212 4.83456 5.04104 5.09580 5.16727 5.18365 5.30897 5.39060 5.46510 5.50554 5.55873 5.57602 5.69624 5.79672 5.84800 5.86822 5.93988 5.98997 6.10571 6.16297 6.19513 6.23605 6.26938 6.28810 6.42424 6.55495 6.67248 6.87260 6.91725 7.19887 7.22069 7.33596 7.57098 8.18193 8.34218 8.68051 8.82628 9.23314 9.61897 11.01006 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.018018 B = 0.004592 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.650651 B = 6095.716472 C = 7062.174690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C -0.099 4.099 4 H 0.080 0.920 5 C -0.117 4.117 6 C -0.125 4.125 7 C -0.135 4.135 8 C 0.165 3.835 9 H 0.088 0.912 10 N -0.748 5.748 11 C 0.697 3.303 12 O -0.605 6.605 13 N -0.717 5.717 14 C 0.178 3.822 15 C 0.005 3.995 16 C -0.574 4.574 17 H 0.051 0.949 18 C 0.030 3.970 19 N -0.898 5.898 20 Si 1.064 2.936 21 H -0.288 1.288 22 H -0.289 1.289 23 H -0.283 1.283 24 C -0.195 4.195 25 C -0.170 4.170 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.395 0.605 38 H 0.397 0.603 39 H 0.061 0.939 40 H 0.034 0.966 41 H 0.276 0.724 42 H 0.080 0.920 43 H 0.067 0.933 44 H 0.068 0.932 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.365 8.088 -11.565 18.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.118 4.118 4 H 0.098 0.902 5 C -0.154 4.154 6 C -0.163 4.163 7 C -0.174 4.174 8 C 0.059 3.941 9 H 0.106 0.894 10 N -0.406 5.406 11 C 0.397 3.603 12 O -0.485 6.485 13 N -0.369 5.369 14 C 0.054 3.946 15 C 0.004 3.996 16 C -0.611 4.611 17 H 0.070 0.930 18 C -0.176 4.176 19 N -0.532 5.532 20 Si 0.893 3.107 21 H -0.215 1.215 22 H -0.215 1.215 23 H -0.208 1.208 24 C -0.232 4.232 25 C -0.209 4.209 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.232 0.768 38 H 0.230 0.770 39 H 0.080 0.920 40 H 0.052 0.948 41 H 0.087 0.913 42 H 0.099 0.901 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -11.147 8.292 -9.624 16.901 hybrid contribution 0.042 -0.109 -1.816 1.819 sum -11.105 8.184 -11.439 17.921 Atomic orbital electron populations 1.21765 0.95621 1.01653 1.01678 1.21622 0.96050 0.96179 1.02387 1.22072 0.94456 0.96784 0.98466 0.90169 1.22431 0.97846 0.98559 0.96593 1.22461 0.94805 0.98212 1.00785 1.22818 0.98049 0.99013 0.97480 1.21362 0.91752 0.82336 0.98646 0.89431 1.45470 1.20657 1.09220 1.65302 1.16085 0.81279 0.83893 0.79032 1.90854 1.59354 1.43703 1.54601 1.44980 1.22914 1.05930 1.63122 1.20833 0.81467 0.96060 0.96281 1.19341 0.92626 0.90477 0.97161 1.21132 1.11082 1.35364 0.93567 0.93040 1.25731 0.99088 0.98386 0.94433 1.70713 1.19491 1.23479 1.39502 0.83620 0.75131 0.75599 0.76394 1.21504 1.21547 1.20802 1.22914 1.07639 1.01358 0.91293 1.22723 0.95940 1.02638 0.99561 0.92773 0.92724 0.92773 0.91782 0.90933 0.91694 0.91442 0.91448 0.91626 0.91233 0.91358 0.76849 0.76965 0.92035 0.94808 0.91301 0.90128 0.91441 0.91356 0.89535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.77 37.16 0.36 -0.89 16 2 C -0.12 -1.21 3.92 -26.74 -0.10 -1.32 16 3 C -0.10 -0.99 2.93 -89.50 -0.26 -1.25 16 4 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 5 C -0.12 -0.98 5.53 -25.07 -0.14 -1.12 16 6 C -0.12 -1.13 6.91 -24.74 -0.17 -1.30 16 7 C -0.13 -1.61 6.52 -25.07 -0.16 -1.77 16 8 C 0.17 2.17 3.21 -66.81 -0.21 1.95 16 9 H 0.09 1.35 7.61 -51.93 -0.39 0.96 16 10 N -0.75 -11.15 4.43 -57.58 -0.25 -11.41 16 11 C 0.70 13.83 8.56 -86.92 -0.74 13.09 16 12 O -0.61 -14.29 16.02 5.29 0.08 -14.20 16 13 N -0.72 -14.53 5.36 -65.22 -0.35 -14.88 16 14 C 0.18 4.09 5.49 -4.04 -0.02 4.07 16 15 C 0.00 0.11 1.03 -155.66 -0.16 -0.05 16 16 C -0.57 -14.91 8.26 -34.44 -0.28 -15.20 16 17 H 0.05 1.32 7.82 -52.49 -0.41 0.91 16 18 C 0.03 0.83 5.39 -17.82 -0.10 0.73 16 19 N -0.90 -26.13 13.46 55.43 0.75 -25.39 16 20 Si 1.06 24.29 29.91 -169.99 -5.08 19.21 16 21 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 22 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 C -0.19 -4.06 9.93 -26.70 -0.27 -4.33 16 25 C -0.17 -3.85 8.90 -26.70 -0.24 -4.09 16 26 H 0.05 0.40 7.51 -51.93 -0.39 0.01 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.58 7.12 -51.93 -0.37 0.21 16 30 H 0.07 0.83 7.40 -51.92 -0.38 0.44 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.55 7.77 -51.93 -0.40 0.15 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.07 0.84 8.05 -51.93 -0.42 0.42 16 37 H 0.39 5.01 5.85 -40.82 -0.24 4.77 16 38 H 0.40 7.42 8.17 -40.82 -0.33 7.09 16 39 H 0.06 1.61 7.51 -51.93 -0.39 1.22 16 40 H 0.03 0.76 8.10 -51.93 -0.42 0.34 16 41 H 0.28 8.04 6.13 -40.82 -0.25 7.79 16 42 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 43 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 44 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 45 H 0.09 2.09 8.14 -51.93 -0.42 1.66 16 LS Contribution 355.43 15.07 5.36 5.36 Total: -1.00 -30.61 355.43 -9.85 -40.46 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: -7.85 Total: 12.32 kcal Atomic # 6 Polarization: -8.97 SS G_CDS: -2.50 Total: -11.47 kcal Atomic # 7 Polarization: -51.81 SS G_CDS: 0.14 Total: -51.67 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: 0.08 Total: -14.20 kcal Atomic # 14 Polarization: 24.29 SS G_CDS: -5.08 Total: 19.21 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.61 -9.85 -40.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430839123.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.403 kcal (2) G-P(sol) polarization free energy of solvation -30.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds