Wall clock time and date at job start Tue Mar 31 2020 02:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52997 * 109.47657 * 2 1 4 4 H 1.09004 * 110.05817 * 53.57785 * 3 2 1 5 5 C 1.54269 * 110.02916 * 292.16626 * 3 2 1 6 6 C 1.54883 * 104.19631 * 217.10133 * 5 3 2 7 7 C 1.54888 * 102.74877 * 37.94023 * 6 5 3 8 8 C 1.53874 * 110.03828 * 174.99732 * 3 2 1 9 9 H 1.08995 * 110.07620 * 238.59110 * 8 3 2 10 10 N 1.46507 * 110.02782 * 0.02562 * 8 3 2 11 11 C 1.34770 * 119.99682 * 203.61715 * 10 8 3 12 12 O 1.21589 * 120.00144 * 0.02562 * 11 10 8 13 13 N 1.34782 * 120.00015 * 180.02562 * 11 10 8 14 14 C 1.46504 * 120.00162 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.46926 * 174.90709 * 14 13 11 16 16 C 1.50701 * 115.54978 * 304.53658 * 15 14 13 17 17 H 1.07993 * 119.99983 * 95.20082 * 16 15 14 18 18 C 1.37881 * 119.99612 * 275.20432 * 16 15 14 19 19 N 1.31513 * 120.00391 * 5.98659 * 18 16 15 20 20 Si 1.86800 * 119.99755 * 185.98982 * 18 16 15 21 21 H 1.48503 * 109.47200 * 59.99688 * 20 18 16 22 22 H 1.48502 * 109.47083 * 300.00062 * 20 18 16 23 23 H 1.48498 * 109.47457 * 179.97438 * 20 18 16 24 24 C 1.52996 * 117.49826 * 90.20877 * 15 14 13 25 25 C 1.52996 * 117.49615 * 158.86831 * 15 14 13 26 26 H 1.09000 * 109.47022 * 60.00003 * 1 2 3 27 27 H 1.08994 * 109.47502 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47013 * 300.00261 * 1 2 3 29 29 H 1.08999 * 109.47013 * 239.99739 * 2 1 3 30 30 H 1.09008 * 109.46804 * 119.99784 * 2 1 3 31 31 H 1.09006 * 110.48381 * 98.42437 * 5 3 2 32 32 H 1.08993 * 110.60296 * 335.83674 * 5 3 2 33 33 H 1.08999 * 110.76020 * 279.62993 * 6 5 3 34 34 H 1.08995 * 110.91681 * 156.33541 * 6 5 3 35 35 H 1.09006 * 110.49099 * 203.37912 * 7 6 5 36 36 H 1.09007 * 110.59562 * 80.79278 * 7 6 5 37 37 H 0.97002 * 120.00060 * 23.62411 * 10 8 3 38 38 H 0.97000 * 119.99890 * 359.97438 * 13 11 10 39 39 H 1.09004 * 109.46846 * 54.90184 * 14 13 11 40 40 H 1.09000 * 109.46922 * 294.90649 * 14 13 11 41 41 H 0.97001 * 120.00086 * 5.35553 * 19 18 16 42 42 H 1.08999 * 117.49637 * 214.99731 * 24 15 14 43 43 H 1.08998 * 117.49888 * 0.02562 * 24 15 14 44 44 H 1.09005 * 117.50223 * 359.97225 * 25 15 14 45 45 H 1.08998 * 117.50272 * 144.97148 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5916 1.9976 0.8239 5 6 1.7007 2.1229 -1.3423 6 6 2.9290 3.0199 -1.6346 7 6 4.1125 2.1495 -1.1440 8 6 3.5735 1.4593 0.1261 9 1 3.8700 2.0221 1.0112 10 7 4.0854 0.0890 0.2077 11 6 5.2806 -0.1507 0.7826 12 8 5.9337 0.7702 1.2339 13 7 5.7518 -1.4112 0.8572 14 6 7.0507 -1.6719 1.4827 15 6 7.2898 -3.1815 1.5515 16 6 6.2181 -3.9781 2.2502 17 1 5.4300 -4.4426 1.6764 18 6 6.2440 -4.1137 3.6221 19 7 7.1328 -3.4531 4.3316 20 14 5.0167 -5.2357 4.4730 21 1 5.1847 -6.6236 3.9720 22 1 3.6367 -4.7691 4.1845 23 1 5.2532 -5.2071 5.9387 24 6 7.9993 -3.8391 0.3663 25 6 8.7351 -3.6619 1.6968 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8901 31 1 0.7999 2.7291 -1.2456 32 1 1.5759 1.3787 -2.1288 33 1 2.8723 3.9493 -1.0681 34 1 3.0162 3.2246 -2.7017 35 1 4.9719 2.7750 -0.9027 36 1 4.3808 1.4079 -1.8965 37 1 3.5642 -0.6457 -0.1521 38 1 5.2305 -2.1459 0.4975 39 1 7.0587 -1.2563 2.4903 40 1 7.8388 -1.2058 0.8912 41 1 7.7187 -2.8120 3.8997 42 1 7.6911 -4.8480 0.0919 43 1 8.2962 -3.1963 -0.4623 44 1 9.5157 -2.9025 1.7429 45 1 8.9110 -4.5538 2.2981 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430839123.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:43:12 Heat of formation + Delta-G solvation = -48.896721 kcal Electronic energy + Delta-G solvation = -22699.298323 eV Core-core repulsion = 19522.655366 eV Total energy + Delta-G solvation = -3176.642958 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.36938 -39.63889 -38.62486 -35.09121 -34.45845 -34.04451 -33.92734 -29.08016 -28.48265 -27.33056 -26.64986 -23.91975 -23.13183 -22.14119 -21.58781 -21.51919 -20.07354 -19.47643 -18.45791 -17.35969 -16.66917 -16.38245 -16.19239 -15.76826 -15.60188 -15.38173 -15.02495 -14.81606 -14.59124 -14.33241 -14.06891 -13.66705 -13.51113 -13.16138 -12.84802 -12.67961 -12.59613 -12.24402 -12.21251 -11.96585 -11.89663 -11.85152 -11.55366 -11.50437 -11.37819 -11.33300 -11.25701 -10.57195 -10.51072 -10.32413 -10.20340 -9.62264 -8.50025 -6.27012 1.55512 1.61931 1.80064 1.80763 2.20643 2.60043 3.18115 3.24604 3.46600 3.58640 3.68941 3.84246 4.07353 4.25801 4.30874 4.36505 4.39119 4.46035 4.51307 4.55349 4.56442 4.69106 4.78235 4.80160 4.80913 4.84314 4.93059 5.04521 5.06634 5.11478 5.18762 5.23608 5.26356 5.33564 5.36744 5.44101 5.45714 5.50167 5.60826 5.71377 6.10808 6.14383 6.27434 6.69838 7.18537 7.56040 7.65280 8.87644 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.018018 B = 0.004592 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1553.650651 B = 6095.716472 C = 7062.174690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.125 4.125 3 C -0.091 4.091 4 H 0.082 0.918 5 C -0.108 4.108 6 C -0.117 4.117 7 C -0.133 4.133 8 C 0.156 3.844 9 H 0.057 0.943 10 N -0.728 5.728 11 C 0.693 3.307 12 O -0.647 6.647 13 N -0.714 5.714 14 C 0.193 3.807 15 C -0.020 4.020 16 C -0.571 4.571 17 H 0.055 0.945 18 C -0.020 4.020 19 N -0.932 5.932 20 Si 1.107 2.893 21 H -0.271 1.271 22 H -0.273 1.273 23 H -0.294 1.294 24 C -0.162 4.162 25 C -0.177 4.177 26 H 0.069 0.931 27 H 0.056 0.944 28 H 0.052 0.948 29 H 0.073 0.927 30 H 0.050 0.950 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.047 0.953 36 H 0.067 0.933 37 H 0.408 0.592 38 H 0.405 0.595 39 H 0.019 0.981 40 H 0.038 0.962 41 H 0.263 0.737 42 H 0.087 0.913 43 H 0.092 0.908 44 H 0.078 0.922 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.614 7.747 -13.834 20.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.163 4.163 3 C -0.111 4.111 4 H 0.101 0.899 5 C -0.146 4.146 6 C -0.155 4.155 7 C -0.172 4.172 8 C 0.051 3.949 9 H 0.075 0.925 10 N -0.386 5.386 11 C 0.393 3.607 12 O -0.530 6.530 13 N -0.367 5.367 14 C 0.068 3.932 15 C -0.021 4.021 16 C -0.609 4.609 17 H 0.073 0.927 18 C -0.220 4.220 19 N -0.567 5.567 20 Si 0.930 3.070 21 H -0.196 1.196 22 H -0.198 1.198 23 H -0.220 1.220 24 C -0.199 4.199 25 C -0.215 4.215 26 H 0.088 0.912 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.091 0.909 30 H 0.069 0.931 31 H 0.103 0.897 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.100 0.900 35 H 0.066 0.934 36 H 0.085 0.915 37 H 0.248 0.752 38 H 0.241 0.759 39 H 0.038 0.962 40 H 0.057 0.943 41 H 0.073 0.927 42 H 0.106 0.894 43 H 0.111 0.889 44 H 0.097 0.903 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.448 7.937 -11.950 19.663 hybrid contribution 0.758 0.034 -1.145 1.373 sum -12.691 7.971 -13.094 19.901 Atomic orbital electron populations 1.21732 0.94167 1.02050 1.02380 1.21609 0.97310 0.95591 1.01754 1.22045 0.91516 0.97512 0.99982 0.89938 1.22414 0.98128 0.98650 0.95370 1.22445 0.93443 0.97867 1.01732 1.22765 0.98676 0.99106 0.96690 1.21583 0.94266 0.80862 0.98180 0.92454 1.45374 1.18829 1.10688 1.63702 1.16290 0.82265 0.83134 0.79029 1.90824 1.60913 1.44838 1.56446 1.44812 1.22343 1.06491 1.63047 1.20468 0.82940 0.95542 0.94264 1.19347 0.92704 0.90488 0.99546 1.21425 1.11358 1.34478 0.93602 0.92727 1.26991 0.99893 0.99205 0.95926 1.70825 1.21112 1.24943 1.39849 0.83055 0.74023 0.75023 0.74852 1.19591 1.19808 1.21974 1.22924 1.04588 1.01661 0.90752 1.22661 0.95832 1.02123 1.00908 0.91227 0.92533 0.92917 0.90888 0.93081 0.89699 0.90431 0.91031 0.89984 0.93373 0.91468 0.75236 0.75921 0.96244 0.94350 0.92705 0.89441 0.88940 0.90320 0.91563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.77 71.98 0.70 -1.35 16 2 C -0.12 -2.17 3.92 30.59 0.12 -2.05 16 3 C -0.09 -1.67 2.93 -10.07 -0.03 -1.70 16 4 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 5 C -0.11 -1.45 5.53 31.67 0.18 -1.28 16 6 C -0.12 -1.83 6.91 31.88 0.22 -1.61 16 7 C -0.13 -3.09 6.52 31.67 0.21 -2.88 16 8 C 0.16 4.08 3.21 45.71 0.15 4.22 16 9 H 0.06 1.85 7.61 -2.39 -0.02 1.83 16 10 N -0.73 -21.51 4.43 -454.35 -2.01 -23.52 16 11 C 0.69 27.94 8.56 179.05 1.53 29.47 16 12 O -0.65 -31.70 16.02 -4.00 -0.06 -31.76 16 13 N -0.71 -29.01 5.36 -478.52 -2.57 -31.58 16 14 C 0.19 9.05 5.49 86.38 0.47 9.52 16 15 C -0.02 -0.94 1.03 -52.93 -0.05 -0.99 16 16 C -0.57 -29.49 8.26 25.60 0.21 -29.28 16 17 H 0.05 2.73 7.82 -2.91 -0.02 2.71 16 18 C -0.02 -1.08 5.39 84.66 0.46 -0.63 16 19 N -0.93 -55.65 13.46 21.45 0.29 -55.36 16 20 Si 1.11 48.71 29.91 68.60 2.05 50.76 16 21 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 22 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 23 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 24 C -0.16 -6.44 9.93 30.62 0.30 -6.14 16 25 C -0.18 -7.98 8.90 30.62 0.27 -7.70 16 26 H 0.07 0.78 7.51 -2.39 -0.02 0.76 16 27 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.07 1.13 7.12 -2.39 -0.02 1.12 16 30 H 0.05 1.11 7.40 -2.38 -0.02 1.09 16 31 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 32 H 0.08 0.94 7.77 -2.39 -0.02 0.92 16 33 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.05 1.30 8.14 -2.38 -0.02 1.29 16 36 H 0.07 1.57 8.05 -2.38 -0.02 1.55 16 37 H 0.41 9.87 5.85 -92.71 -0.54 9.33 16 38 H 0.41 14.84 8.17 -92.71 -0.76 14.08 16 39 H 0.02 1.06 7.51 -2.39 -0.02 1.04 16 40 H 0.04 1.74 8.10 -2.39 -0.02 1.72 16 41 H 0.26 15.96 6.13 -92.71 -0.57 15.39 16 42 H 0.09 3.37 8.14 -2.39 -0.02 3.35 16 43 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 44 H 0.08 3.33 8.14 -2.38 -0.02 3.31 16 45 H 0.07 3.23 8.14 -2.39 -0.02 3.21 16 Total: -1.00 -67.77 355.43 2.31 -65.47 By element: Atomic # 1 Polarization: 38.52 SS G_CDS: -0.13 Total: 38.39 kcal Atomic # 6 Polarization: -17.13 SS G_CDS: 4.74 Total: -12.40 kcal Atomic # 7 Polarization: -106.17 SS G_CDS: -4.29 Total: -110.46 kcal Atomic # 8 Polarization: -31.70 SS G_CDS: -0.06 Total: -31.76 kcal Atomic # 14 Polarization: 48.71 SS G_CDS: 2.05 Total: 50.76 kcal Total: -67.77 2.31 -65.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430839123.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.572 kcal (2) G-P(sol) polarization free energy of solvation -67.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds