Wall clock time and date at job start Tue Mar 31 2020 02:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.47192 * 2 1 4 4 H 1.09002 * 110.54066 * 307.61570 * 3 2 1 5 5 C 1.54895 * 110.48180 * 70.22610 * 3 2 1 6 6 C 1.54898 * 102.74346 * 156.61873 * 5 3 2 7 7 C 1.54264 * 104.19658 * 322.05687 * 6 5 3 8 8 C 1.53873 * 106.60009 * 23.61225 * 7 6 5 9 9 H 1.09000 * 110.03447 * 119.33058 * 8 7 6 10 10 N 1.46500 * 110.03173 * 240.71310 * 8 7 6 11 11 C 1.34775 * 119.99860 * 273.54191 * 10 8 7 12 12 O 1.21589 * 120.00194 * 0.02562 * 11 10 8 13 13 N 1.34781 * 119.99758 * 179.72546 * 11 10 8 14 14 C 1.46494 * 119.99696 * 180.27923 * 13 11 10 15 15 C 1.53007 * 109.47028 * 178.28721 * 14 13 11 16 16 C 1.50694 * 115.54797 * 65.13833 * 15 14 13 17 17 H 1.07996 * 120.00053 * 265.40390 * 16 15 14 18 18 C 1.37874 * 119.99735 * 85.41234 * 16 15 14 19 19 N 1.31513 * 120.00253 * 353.54891 * 18 16 15 20 20 Si 1.86803 * 119.99726 * 173.55448 * 18 16 15 21 21 H 1.48499 * 109.47158 * 59.99823 * 20 18 16 22 22 H 1.48502 * 109.47043 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47091 * 299.99511 * 20 18 16 24 24 C 1.53001 * 117.49622 * 279.47076 * 15 14 13 25 25 C 1.53001 * 117.49859 * 210.81257 * 15 14 13 26 26 H 1.08992 * 109.47170 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46654 * 299.99702 * 1 2 3 28 28 H 1.09002 * 109.47451 * 59.99517 * 1 2 3 29 29 H 1.09001 * 109.46914 * 240.00782 * 2 1 3 30 30 H 1.08997 * 109.47067 * 120.00253 * 2 1 3 31 31 H 1.09000 * 110.75643 * 38.31233 * 5 3 2 32 32 H 1.08998 * 110.91678 * 275.00852 * 5 3 2 33 33 H 1.08997 * 110.48295 * 203.37884 * 6 5 3 34 34 H 1.08997 * 110.48150 * 80.73820 * 6 5 3 35 35 H 1.08990 * 110.03378 * 264.32531 * 7 6 5 36 36 H 1.09002 * 110.07058 * 142.91392 * 7 6 5 37 37 H 0.96998 * 119.99846 * 93.54743 * 10 8 7 38 38 H 0.97002 * 119.99831 * 0.27375 * 13 11 10 39 39 H 1.08994 * 109.47141 * 298.28510 * 14 13 11 40 40 H 1.09003 * 109.47422 * 58.28572 * 14 13 11 41 41 H 0.97000 * 120.00393 * 185.06571 * 19 18 16 42 42 H 1.08999 * 117.49867 * 359.97438 * 24 15 14 43 43 H 1.08996 * 117.49923 * 145.01775 * 24 15 14 44 44 H 1.09000 * 117.49819 * 214.97828 * 25 15 14 45 45 H 1.09003 * 117.49576 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5802 2.0108 -0.8085 5 6 1.7579 2.1172 1.3655 6 6 2.8154 3.2480 1.4129 7 6 4.0703 2.6196 0.7724 8 6 3.5773 1.4717 -0.1259 9 1 3.8644 1.6578 -1.1609 10 7 4.1424 0.1993 0.3302 11 6 5.3538 -0.1959 -0.1089 12 8 5.9779 0.5037 -0.8831 13 7 5.8761 -1.3638 0.3151 14 6 7.1955 -1.7905 -0.1574 15 6 7.5688 -3.1190 0.5035 16 6 6.6996 -4.2941 0.1369 17 1 5.8628 -4.5633 0.7642 18 6 6.9730 -5.0257 -0.9993 19 7 7.9107 -4.6250 -1.8298 20 14 6.0112 -6.5862 -1.3592 21 1 4.5674 -6.2609 -1.4806 22 1 6.4925 -7.1820 -2.6314 23 1 6.2088 -7.5559 -0.2520 24 6 8.1234 -3.0678 1.9286 25 6 9.0533 -3.3898 0.7562 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5137 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 1.9092 1.4124 2.1831 32 1 0.7495 2.5298 1.3946 33 1 3.0179 3.5379 2.4439 34 1 2.4807 4.1078 0.8325 35 1 4.7299 2.2301 1.5476 36 1 4.5966 3.3628 0.1734 37 1 3.6447 -0.3586 0.9481 38 1 5.3784 -1.9218 0.9331 39 1 7.1703 -1.9176 -1.2396 40 1 7.9365 -1.0345 0.1025 41 1 8.0534 -5.0975 -2.6648 42 1 8.2226 -2.0877 2.3951 43 1 7.8598 -3.8843 2.6008 44 1 9.4013 -4.4180 0.6575 45 1 9.7640 -2.6217 0.4511 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430839124.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:43:16 Heat of formation + Delta-G solvation = -29.337095 kcal Electronic energy + Delta-G solvation = -22612.000473 eV Core-core repulsion = 19436.205684 eV Total energy + Delta-G solvation = -3175.794788 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.97007 -38.21058 -36.60685 -33.36279 -33.27612 -32.86632 -31.94321 -27.87266 -27.70690 -25.92052 -24.88521 -22.92207 -21.23589 -20.65487 -20.49575 -19.44282 -19.10602 -17.81235 -16.30571 -15.82945 -15.39495 -14.87403 -14.73422 -14.62353 -14.43311 -13.91567 -13.78221 -13.23758 -13.16903 -12.98234 -12.60208 -12.17121 -11.97226 -11.65447 -11.56490 -11.33346 -11.14362 -10.98679 -10.92869 -10.87464 -10.68129 -10.59975 -10.53604 -10.43151 -10.24873 -9.67236 -9.46035 -8.94811 -8.73129 -8.47528 -8.22549 -7.91219 -6.05647 -4.14272 3.27470 3.32001 3.33737 3.34821 3.86758 4.36345 4.38980 4.54695 4.64514 4.89684 5.07444 5.14106 5.20687 5.22456 5.38874 5.41187 5.45152 5.54838 5.59060 5.60342 5.74371 5.80793 5.88370 5.95797 6.00197 6.05749 6.16001 6.19380 6.25190 6.34498 6.37389 6.50423 6.63614 6.71885 6.89938 6.96551 7.11299 7.39029 7.46164 7.50909 7.67330 7.83008 8.36459 8.74282 8.86231 9.29680 9.52194 11.02198 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.018328 B = 0.004446 C = 0.003872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.312849 B = 6296.861128 C = 7230.600935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C -0.099 4.099 4 H 0.084 0.916 5 C -0.119 4.119 6 C -0.124 4.124 7 C -0.135 4.135 8 C 0.166 3.834 9 H 0.087 0.913 10 N -0.747 5.747 11 C 0.697 3.303 12 O -0.605 6.605 13 N -0.722 5.722 14 C 0.183 3.817 15 C 0.028 3.972 16 C -0.500 4.500 17 H 0.058 0.942 18 C 0.074 3.926 19 N -0.874 5.874 20 Si 0.890 3.110 21 H -0.278 1.278 22 H -0.287 1.287 23 H -0.277 1.277 24 C -0.211 4.211 25 C -0.148 4.148 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.392 0.608 38 H 0.394 0.606 39 H 0.069 0.931 40 H 0.033 0.967 41 H 0.262 0.738 42 H 0.065 0.935 43 H 0.077 0.923 44 H 0.083 0.917 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.644 11.236 6.335 18.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C -0.118 4.118 4 H 0.102 0.898 5 C -0.156 4.156 6 C -0.162 4.162 7 C -0.174 4.174 8 C 0.059 3.941 9 H 0.105 0.895 10 N -0.404 5.404 11 C 0.397 3.603 12 O -0.484 6.484 13 N -0.374 5.374 14 C 0.059 3.941 15 C 0.028 3.972 16 C -0.537 4.537 17 H 0.077 0.923 18 C -0.130 4.130 19 N -0.510 5.510 20 Si 0.718 3.282 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.202 1.202 24 C -0.248 4.248 25 C -0.186 4.186 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.228 0.772 38 H 0.228 0.772 39 H 0.087 0.913 40 H 0.052 0.948 41 H 0.072 0.928 42 H 0.083 0.917 43 H 0.096 0.904 44 H 0.101 0.899 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.871 11.766 5.442 17.577 hybrid contribution -0.847 -1.420 0.247 1.672 sum -12.718 10.346 5.689 17.354 Atomic orbital electron populations 1.21778 0.95857 1.01588 1.01574 1.21503 0.95616 0.95829 1.02496 1.22326 0.94415 0.96746 0.98297 0.89754 1.22591 0.98629 0.97538 0.96885 1.22357 0.95449 0.97844 1.00553 1.22629 0.97545 0.97835 0.99411 1.21312 0.91348 0.82571 0.98822 0.89535 1.45346 1.19441 1.23534 1.52086 1.16088 0.81094 0.82117 0.81029 1.90859 1.61572 1.56210 1.39777 1.45142 1.21694 1.20295 1.50238 1.20822 0.80161 0.93648 0.99458 1.19044 0.93628 0.93198 0.91375 1.20279 1.13118 1.10894 1.09450 0.92343 1.24976 0.94611 0.97193 0.96197 1.69964 1.31276 1.40227 1.09531 0.86703 0.80186 0.83757 0.77575 1.20317 1.21290 1.20223 1.23013 1.08995 0.99854 0.92936 1.22488 0.94091 1.00621 1.01392 0.92792 0.92793 0.92890 0.91285 0.91899 0.91433 0.91623 0.91853 0.91744 0.91235 0.91417 0.77245 0.77236 0.91291 0.94832 0.92800 0.91681 0.90445 0.89853 0.91666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.79 37.16 0.36 -0.89 16 2 C -0.12 -1.14 4.46 -26.73 -0.12 -1.26 16 3 C -0.10 -0.95 2.82 -88.95 -0.25 -1.20 16 4 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 5 C -0.12 -1.00 5.67 -24.73 -0.14 -1.14 16 6 C -0.12 -1.11 6.83 -25.07 -0.17 -1.28 16 7 C -0.14 -1.60 6.59 -25.61 -0.17 -1.76 16 8 C 0.17 2.12 3.10 -66.81 -0.21 1.91 16 9 H 0.09 1.30 7.61 -51.93 -0.39 0.91 16 10 N -0.75 -10.77 4.38 -57.58 -0.25 -11.02 16 11 C 0.70 13.54 8.55 -86.91 -0.74 12.80 16 12 O -0.60 -14.14 16.02 5.29 0.08 -14.05 16 13 N -0.72 -14.35 5.48 -65.23 -0.36 -14.71 16 14 C 0.18 4.25 5.50 -4.04 -0.02 4.23 16 15 C 0.03 0.67 1.38 -155.66 -0.21 0.46 16 16 C -0.50 -12.87 8.63 -34.44 -0.30 -13.17 16 17 H 0.06 1.47 7.82 -52.49 -0.41 1.06 16 18 C 0.07 1.98 5.39 -17.82 -0.10 1.89 16 19 N -0.87 -24.42 12.91 55.43 0.72 -23.71 16 20 Si 0.89 20.61 29.55 -169.99 -5.02 15.59 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 C -0.21 -4.41 9.96 -26.69 -0.27 -4.68 16 25 C -0.15 -3.40 9.42 -26.69 -0.25 -3.66 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.40 7.56 -51.93 -0.39 0.01 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.59 6.40 -51.93 -0.33 0.26 16 31 H 0.07 0.57 7.97 -51.93 -0.41 0.16 16 32 H 0.07 0.48 8.06 -51.93 -0.42 0.06 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.92 7.92 -51.93 -0.41 0.51 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.39 4.78 6.51 -40.82 -0.27 4.52 16 38 H 0.39 7.13 8.38 -40.82 -0.34 6.79 16 39 H 0.07 1.85 8.14 -51.93 -0.42 1.43 16 40 H 0.03 0.78 8.09 -51.93 -0.42 0.36 16 41 H 0.26 7.08 8.32 -40.82 -0.34 6.74 16 42 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 43 H 0.08 1.59 8.14 -51.93 -0.42 1.16 16 44 H 0.08 2.03 8.14 -51.93 -0.42 1.61 16 45 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 360.06 15.07 5.43 5.43 Total: -1.00 -29.66 360.06 -10.00 -39.66 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: -8.01 Total: 10.57 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: -2.58 Total: -7.75 kcal Atomic # 7 Polarization: -49.54 SS G_CDS: 0.11 Total: -49.44 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: 0.08 Total: -14.05 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -29.66 -10.00 -39.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430839124.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.324 kcal (2) G-P(sol) polarization free energy of solvation -29.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds