Wall clock time and date at job start Tue Mar 31 2020 02:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53006 * 109.47192 * 2 1 4 4 H 1.09002 * 110.54066 * 307.61570 * 3 2 1 5 5 C 1.54895 * 110.48180 * 70.22610 * 3 2 1 6 6 C 1.54898 * 102.74346 * 156.61873 * 5 3 2 7 7 C 1.54264 * 104.19658 * 322.05687 * 6 5 3 8 8 C 1.53873 * 106.60009 * 23.61225 * 7 6 5 9 9 H 1.09000 * 110.03447 * 119.33058 * 8 7 6 10 10 N 1.46500 * 110.03173 * 240.71310 * 8 7 6 11 11 C 1.34775 * 119.99860 * 273.54191 * 10 8 7 12 12 O 1.21589 * 120.00194 * 0.02562 * 11 10 8 13 13 N 1.34781 * 119.99758 * 179.72546 * 11 10 8 14 14 C 1.46494 * 119.99696 * 180.27923 * 13 11 10 15 15 C 1.53007 * 109.47028 * 178.28721 * 14 13 11 16 16 C 1.50694 * 115.54797 * 65.13833 * 15 14 13 17 17 H 1.07996 * 120.00053 * 265.40390 * 16 15 14 18 18 C 1.37874 * 119.99735 * 85.41234 * 16 15 14 19 19 N 1.31513 * 120.00253 * 353.54891 * 18 16 15 20 20 Si 1.86803 * 119.99726 * 173.55448 * 18 16 15 21 21 H 1.48499 * 109.47158 * 59.99823 * 20 18 16 22 22 H 1.48502 * 109.47043 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47091 * 299.99511 * 20 18 16 24 24 C 1.53001 * 117.49622 * 279.47076 * 15 14 13 25 25 C 1.53001 * 117.49859 * 210.81257 * 15 14 13 26 26 H 1.08992 * 109.47170 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46654 * 299.99702 * 1 2 3 28 28 H 1.09002 * 109.47451 * 59.99517 * 1 2 3 29 29 H 1.09001 * 109.46914 * 240.00782 * 2 1 3 30 30 H 1.08997 * 109.47067 * 120.00253 * 2 1 3 31 31 H 1.09000 * 110.75643 * 38.31233 * 5 3 2 32 32 H 1.08998 * 110.91678 * 275.00852 * 5 3 2 33 33 H 1.08997 * 110.48295 * 203.37884 * 6 5 3 34 34 H 1.08997 * 110.48150 * 80.73820 * 6 5 3 35 35 H 1.08990 * 110.03378 * 264.32531 * 7 6 5 36 36 H 1.09002 * 110.07058 * 142.91392 * 7 6 5 37 37 H 0.96998 * 119.99846 * 93.54743 * 10 8 7 38 38 H 0.97002 * 119.99831 * 0.27375 * 13 11 10 39 39 H 1.08994 * 109.47141 * 298.28510 * 14 13 11 40 40 H 1.09003 * 109.47422 * 58.28572 * 14 13 11 41 41 H 0.97000 * 120.00393 * 185.06571 * 19 18 16 42 42 H 1.08999 * 117.49867 * 359.97438 * 24 15 14 43 43 H 1.08996 * 117.49923 * 145.01775 * 24 15 14 44 44 H 1.09000 * 117.49819 * 214.97828 * 25 15 14 45 45 H 1.09003 * 117.49576 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5802 2.0108 -0.8085 5 6 1.7579 2.1172 1.3655 6 6 2.8154 3.2480 1.4129 7 6 4.0703 2.6196 0.7724 8 6 3.5773 1.4717 -0.1259 9 1 3.8644 1.6578 -1.1609 10 7 4.1424 0.1993 0.3302 11 6 5.3538 -0.1959 -0.1089 12 8 5.9779 0.5037 -0.8831 13 7 5.8761 -1.3638 0.3151 14 6 7.1955 -1.7905 -0.1574 15 6 7.5688 -3.1190 0.5035 16 6 6.6996 -4.2941 0.1369 17 1 5.8628 -4.5633 0.7642 18 6 6.9730 -5.0257 -0.9993 19 7 7.9107 -4.6250 -1.8298 20 14 6.0112 -6.5862 -1.3592 21 1 4.5674 -6.2609 -1.4806 22 1 6.4925 -7.1820 -2.6314 23 1 6.2088 -7.5559 -0.2520 24 6 8.1234 -3.0678 1.9286 25 6 9.0533 -3.3898 0.7562 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8933 -0.5137 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 1.9092 1.4124 2.1831 32 1 0.7495 2.5298 1.3946 33 1 3.0179 3.5379 2.4439 34 1 2.4807 4.1078 0.8325 35 1 4.7299 2.2301 1.5476 36 1 4.5966 3.3628 0.1734 37 1 3.6447 -0.3586 0.9481 38 1 5.3784 -1.9218 0.9331 39 1 7.1703 -1.9176 -1.2396 40 1 7.9365 -1.0345 0.1025 41 1 8.0534 -5.0975 -2.6648 42 1 8.2226 -2.0877 2.3951 43 1 7.8598 -3.8843 2.6008 44 1 9.4013 -4.4180 0.6575 45 1 9.7640 -2.6217 0.4511 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430839124.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:43:16 Heat of formation + Delta-G solvation = -46.376420 kcal Electronic energy + Delta-G solvation = -22612.739353 eV Core-core repulsion = 19436.205684 eV Total energy + Delta-G solvation = -3176.533669 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.28544 -39.49236 -38.36026 -34.97133 -34.34163 -34.03101 -33.89816 -29.04958 -28.49291 -27.73029 -26.65778 -23.70125 -22.99182 -22.08383 -21.37750 -21.24819 -20.21406 -19.35977 -18.05267 -17.16973 -16.71176 -16.39258 -16.24663 -15.94632 -15.60742 -15.31594 -14.99268 -14.90804 -14.41060 -13.94710 -13.90868 -13.61606 -13.45437 -12.96196 -12.92444 -12.79099 -12.62794 -12.38493 -12.22623 -12.03523 -11.90562 -11.75333 -11.51203 -11.44879 -11.40012 -11.23934 -11.21818 -10.85136 -10.44832 -10.21687 -10.02868 -9.54705 -8.08223 -6.21505 1.43857 1.45167 1.51774 1.88844 2.28607 2.43448 3.19784 3.34984 3.54168 3.66186 3.71722 3.88111 4.25928 4.28409 4.36499 4.43265 4.57149 4.58342 4.62518 4.66816 4.68660 4.75002 4.80755 4.82942 4.98375 4.99366 5.02236 5.07971 5.11823 5.22248 5.27574 5.27945 5.31302 5.40070 5.45885 5.56148 5.59961 5.61965 5.70621 5.77302 5.80593 6.19951 6.38101 6.85131 7.27812 7.47777 7.73763 8.99238 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.018328 B = 0.004446 C = 0.003872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.312849 B = 6296.861128 C = 7230.600935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.117 4.117 3 C -0.089 4.089 4 H 0.094 0.906 5 C -0.111 4.111 6 C -0.116 4.116 7 C -0.134 4.134 8 C 0.157 3.843 9 H 0.057 0.943 10 N -0.725 5.725 11 C 0.694 3.306 12 O -0.648 6.648 13 N -0.716 5.716 14 C 0.201 3.799 15 C 0.006 3.994 16 C -0.503 4.503 17 H 0.064 0.936 18 C 0.025 3.975 19 N -0.909 5.909 20 Si 0.950 3.050 21 H -0.272 1.272 22 H -0.292 1.292 23 H -0.269 1.269 24 C -0.175 4.175 25 C -0.159 4.159 26 H 0.052 0.948 27 H 0.068 0.932 28 H 0.055 0.945 29 H 0.045 0.955 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.054 0.946 36 H 0.056 0.944 37 H 0.406 0.594 38 H 0.405 0.595 39 H 0.024 0.976 40 H 0.030 0.970 41 H 0.258 0.742 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.064 0.936 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.067 11.599 8.382 20.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.155 4.155 3 C -0.108 4.108 4 H 0.112 0.888 5 C -0.149 4.149 6 C -0.154 4.154 7 C -0.174 4.174 8 C 0.052 3.948 9 H 0.075 0.925 10 N -0.382 5.382 11 C 0.394 3.606 12 O -0.530 6.530 13 N -0.369 5.369 14 C 0.075 3.925 15 C 0.005 3.995 16 C -0.541 4.541 17 H 0.082 0.918 18 C -0.176 4.176 19 N -0.546 5.546 20 Si 0.776 3.224 21 H -0.197 1.197 22 H -0.218 1.218 23 H -0.194 1.194 24 C -0.212 4.212 25 C -0.197 4.197 26 H 0.071 0.929 27 H 0.087 0.913 28 H 0.074 0.926 29 H 0.063 0.937 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.106 0.894 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.244 0.756 38 H 0.240 0.760 39 H 0.042 0.958 40 H 0.048 0.952 41 H 0.067 0.933 42 H 0.105 0.895 43 H 0.106 0.894 44 H 0.083 0.917 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -14.356 12.126 7.540 20.248 hybrid contribution -0.087 -1.481 -0.394 1.535 sum -14.443 10.644 7.146 19.312 Atomic orbital electron populations 1.21742 0.94284 1.01866 1.02472 1.21493 0.96989 0.95514 1.01515 1.22293 0.91453 0.97190 0.99892 0.88819 1.22580 0.99533 0.97134 0.95618 1.22330 0.93815 0.98245 1.01004 1.22581 0.98847 0.97228 0.98696 1.21528 0.93795 0.81981 0.97496 0.92458 1.45197 1.17580 1.24141 1.51297 1.16265 0.82114 0.81589 0.80642 1.90829 1.63118 1.57377 1.41726 1.44911 1.20887 1.20702 1.50444 1.20369 0.81714 0.93618 0.96754 1.19062 0.93811 0.92720 0.93938 1.20605 1.13199 1.11131 1.09160 0.91789 1.25708 0.95630 0.99947 0.96320 1.70102 1.33066 1.41533 1.09899 0.85744 0.79029 0.80423 0.77185 1.19689 1.21837 1.19390 1.22994 1.05496 1.01229 0.91480 1.22431 0.94081 0.99744 1.03476 0.92892 0.91273 0.92594 0.93657 0.91506 0.91056 0.89401 0.90771 0.90551 0.92702 0.92478 0.75561 0.75969 0.95778 0.95181 0.93266 0.89453 0.89449 0.91723 0.91229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.79 71.98 0.70 -1.33 16 2 C -0.12 -2.07 4.46 30.60 0.14 -1.93 16 3 C -0.09 -1.55 2.82 -9.71 -0.03 -1.58 16 4 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 5 C -0.11 -1.48 5.67 31.89 0.18 -1.30 16 6 C -0.12 -1.77 6.83 31.67 0.22 -1.55 16 7 C -0.13 -3.08 6.59 31.32 0.21 -2.87 16 8 C 0.16 3.97 3.10 45.72 0.14 4.11 16 9 H 0.06 1.79 7.61 -2.39 -0.02 1.77 16 10 N -0.72 -20.66 4.38 -454.35 -1.99 -22.65 16 11 C 0.69 27.38 8.55 179.05 1.53 28.91 16 12 O -0.65 -31.40 16.02 -4.00 -0.06 -31.46 16 13 N -0.72 -28.58 5.48 -478.53 -2.62 -31.20 16 14 C 0.20 9.53 5.50 86.38 0.48 10.01 16 15 C 0.01 0.26 1.38 -52.93 -0.07 0.19 16 16 C -0.50 -25.76 8.63 25.60 0.22 -25.54 16 17 H 0.06 3.13 7.82 -2.91 -0.02 3.11 16 18 C 0.02 1.31 5.39 84.65 0.46 1.77 16 19 N -0.91 -52.01 12.91 21.45 0.28 -51.74 16 20 Si 0.95 42.34 29.55 68.60 2.03 44.36 16 21 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 22 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 23 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 24 C -0.17 -6.99 9.96 30.62 0.30 -6.69 16 25 C -0.16 -7.33 9.42 30.62 0.29 -7.05 16 26 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.07 0.77 7.56 -2.39 -0.02 0.75 16 28 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.04 1.01 8.14 -2.39 -0.02 1.00 16 30 H 0.07 1.11 6.40 -2.39 -0.02 1.09 16 31 H 0.07 0.93 7.97 -2.39 -0.02 0.91 16 32 H 0.09 0.86 8.06 -2.39 -0.02 0.85 16 33 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.05 1.41 7.92 -2.39 -0.02 1.39 16 36 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.41 9.35 6.51 -92.71 -0.60 8.75 16 38 H 0.41 14.27 8.38 -92.71 -0.78 13.49 16 39 H 0.02 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.03 1.43 8.09 -2.39 -0.02 1.41 16 41 H 0.26 14.34 8.32 -92.71 -0.77 13.57 16 42 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 43 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 44 H 0.06 3.19 8.14 -2.39 -0.02 3.17 16 45 H 0.07 3.09 8.14 -2.39 -0.02 3.07 16 Total: -1.00 -65.44 360.06 1.98 -63.46 By element: Atomic # 1 Polarization: 34.47 SS G_CDS: -0.41 Total: 34.06 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: 4.76 Total: -4.84 kcal Atomic # 7 Polarization: -101.25 SS G_CDS: -4.34 Total: -105.58 kcal Atomic # 8 Polarization: -31.40 SS G_CDS: -0.06 Total: -31.46 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.36 kcal Total: -65.44 1.98 -63.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430839124.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.088 kcal (2) G-P(sol) polarization free energy of solvation -65.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds