Wall clock time and date at job start Tue Mar 31 2020 02:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.47280 * 2 1 4 4 H 1.09003 * 110.53420 * 52.38388 * 3 2 1 5 5 C 1.54261 * 110.48399 * 289.77331 * 3 2 1 6 6 C 1.53876 * 106.59704 * 217.70879 * 5 3 2 7 7 C 1.54261 * 106.59615 * 0.02562 * 6 5 3 8 8 C 1.54883 * 104.20162 * 23.60761 * 7 6 5 9 9 H 1.09003 * 110.91494 * 80.44151 * 8 7 6 10 10 N 1.46500 * 110.75916 * 203.74450 * 8 7 6 11 11 C 1.34775 * 119.99860 * 268.32329 * 10 8 7 12 12 O 1.21589 * 120.00194 * 0.02562 * 11 10 8 13 13 N 1.34781 * 119.99758 * 179.72546 * 11 10 8 14 14 C 1.46494 * 119.99696 * 180.27923 * 13 11 10 15 15 C 1.53007 * 109.47028 * 178.28721 * 14 13 11 16 16 C 1.50694 * 115.54797 * 65.13833 * 15 14 13 17 17 H 1.07996 * 120.00053 * 265.40390 * 16 15 14 18 18 C 1.37874 * 119.99735 * 85.41234 * 16 15 14 19 19 N 1.31513 * 120.00253 * 353.54891 * 18 16 15 20 20 Si 1.86803 * 119.99726 * 173.55448 * 18 16 15 21 21 H 1.48499 * 109.47158 * 59.99823 * 20 18 16 22 22 H 1.48502 * 109.47043 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47091 * 299.99511 * 20 18 16 24 24 C 1.53001 * 117.49622 * 279.47076 * 15 14 13 25 25 C 1.53001 * 117.49859 * 210.81257 * 15 14 13 26 26 H 1.09005 * 109.46995 * 60.00159 * 1 2 3 27 27 H 1.08995 * 109.47371 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46964 * 300.00527 * 1 2 3 29 29 H 1.09004 * 109.47131 * 239.99740 * 2 1 3 30 30 H 1.08997 * 109.46684 * 119.99940 * 2 1 3 31 31 H 1.08997 * 110.03767 * 336.99609 * 5 3 2 32 32 H 1.09003 * 110.03558 * 98.38140 * 5 3 2 33 33 H 1.08998 * 110.02909 * 119.28694 * 6 5 3 34 34 H 1.08995 * 110.03379 * 240.71827 * 6 5 3 35 35 H 1.09000 * 110.48704 * 264.92823 * 7 6 5 36 36 H 1.09003 * 110.49068 * 142.29007 * 7 6 5 37 37 H 0.96998 * 119.99846 * 88.32880 * 10 8 7 38 38 H 0.97002 * 119.99831 * 0.27375 * 13 11 10 39 39 H 1.08994 * 109.47141 * 298.28510 * 14 13 11 40 40 H 1.09003 * 109.47422 * 58.28572 * 14 13 11 41 41 H 0.97000 * 120.00393 * 185.06571 * 19 18 16 42 42 H 1.08999 * 117.49867 * 359.97438 * 24 15 14 43 43 H 1.08996 * 117.49923 * 145.01775 * 24 15 14 44 44 H 1.09000 * 117.49819 * 214.97828 * 25 15 14 45 45 H 1.09004 * 117.49543 * 359.97390 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5801 2.0107 0.8086 5 6 1.7591 2.1145 -1.3599 6 6 2.9739 3.0073 -1.6683 7 6 3.9508 2.8462 -0.4853 8 6 3.5838 1.4712 0.1260 9 1 4.0334 0.6589 -0.4452 10 7 3.9912 1.4024 1.5315 11 6 5.2059 0.9184 1.8581 12 8 5.9638 0.5393 0.9862 13 7 5.5828 0.8603 3.1508 14 6 6.9055 0.3399 3.5054 15 6 7.0965 0.4224 5.0212 16 6 6.1779 -0.4472 5.8403 17 1 5.2599 -0.0395 6.2370 18 6 6.5095 -1.7632 6.0832 19 7 7.5597 -2.2956 5.4975 20 14 5.4668 -2.7900 7.2443 21 1 4.0756 -2.8596 6.7297 22 1 6.0301 -4.1611 7.3339 23 1 5.4656 -2.1658 8.5917 24 6 7.4989 1.7761 5.6099 25 6 8.5186 0.6364 5.5435 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6466 1.3563 -2.1349 32 1 0.8555 2.7209 -1.2972 33 1 3.4508 2.6823 -2.5929 34 1 2.6603 4.0475 -1.7550 35 1 3.7997 3.6409 0.2452 36 1 4.9817 2.8433 -0.8395 37 1 3.3867 1.7052 2.2270 38 1 4.9783 1.1632 3.8464 39 1 6.9850 -0.6989 3.1852 40 1 7.6742 0.9328 3.0095 41 1 7.7511 -3.2399 5.6099 42 1 7.6280 2.6078 4.9172 43 1 7.0995 2.0376 6.5897 44 1 8.7897 0.1485 6.4797 45 1 9.3182 0.7180 4.8071 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430839126.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:43:24 Heat of formation + Delta-G solvation = -36.448698 kcal Electronic energy + Delta-G solvation = -22388.033612 eV Core-core repulsion = 19211.930441 eV Total energy + Delta-G solvation = -3176.103171 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.79028 -38.25064 -36.63314 -33.58224 -33.25885 -32.86338 -31.94579 -27.84834 -27.68986 -25.91675 -24.89277 -22.69552 -21.22625 -20.72507 -20.37366 -19.64263 -19.31695 -17.55856 -16.62143 -15.96144 -15.29412 -14.82143 -14.65843 -14.54564 -14.30334 -13.95786 -13.44548 -13.31632 -13.18648 -13.11713 -12.62034 -12.28928 -11.94280 -11.82646 -11.56868 -11.42017 -11.26012 -10.98784 -10.92997 -10.84673 -10.59956 -10.54823 -10.53267 -10.49986 -10.24988 -9.68657 -9.47190 -8.95075 -8.72085 -8.47682 -8.22926 -7.92104 -6.05817 -4.14477 3.27385 3.28694 3.33699 3.34747 3.84264 4.36248 4.41193 4.56282 4.65017 4.91524 5.03241 5.14165 5.22220 5.24276 5.38011 5.39491 5.45422 5.47982 5.54166 5.60524 5.71400 5.83553 5.92057 5.94944 6.01404 6.05815 6.16135 6.18520 6.27295 6.33171 6.37120 6.50182 6.63201 6.71745 6.88888 6.93181 7.11132 7.38232 7.45534 7.50437 7.66219 7.82866 8.36265 8.73011 8.86029 9.27875 9.52031 11.02018 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.018690 B = 0.004194 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.805771 B = 6675.131810 C = 7697.962255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.118 4.118 3 C -0.098 4.098 4 H 0.078 0.922 5 C -0.116 4.116 6 C -0.123 4.123 7 C -0.137 4.137 8 C 0.165 3.835 9 H 0.095 0.905 10 N -0.746 5.746 11 C 0.698 3.302 12 O -0.604 6.604 13 N -0.721 5.721 14 C 0.183 3.817 15 C 0.029 3.971 16 C -0.500 4.500 17 H 0.059 0.941 18 C 0.075 3.925 19 N -0.874 5.874 20 Si 0.890 3.110 21 H -0.278 1.278 22 H -0.287 1.287 23 H -0.277 1.277 24 C -0.211 4.211 25 C -0.148 4.148 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.392 0.608 38 H 0.395 0.605 39 H 0.069 0.931 40 H 0.034 0.966 41 H 0.262 0.738 42 H 0.065 0.935 43 H 0.077 0.923 44 H 0.083 0.917 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.078 8.763 -10.326 18.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C -0.118 4.118 4 H 0.096 0.904 5 C -0.154 4.154 6 C -0.161 4.161 7 C -0.176 4.176 8 C 0.059 3.941 9 H 0.113 0.887 10 N -0.401 5.401 11 C 0.398 3.602 12 O -0.484 6.484 13 N -0.373 5.373 14 C 0.059 3.941 15 C 0.028 3.972 16 C -0.538 4.538 17 H 0.077 0.923 18 C -0.130 4.130 19 N -0.510 5.510 20 Si 0.718 3.282 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.202 1.202 24 C -0.248 4.248 25 C -0.186 4.186 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.225 0.775 38 H 0.228 0.772 39 H 0.087 0.913 40 H 0.052 0.948 41 H 0.072 0.928 42 H 0.083 0.917 43 H 0.096 0.904 44 H 0.102 0.898 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.175 8.212 -11.073 17.746 hybrid contribution -1.039 -0.381 1.324 1.726 sum -12.215 7.831 -9.749 17.481 Atomic orbital electron populations 1.21773 0.95937 1.01482 1.01579 1.21576 0.95628 0.95752 1.02631 1.22287 0.94834 0.96546 0.98096 0.90392 1.22143 0.98015 0.98687 0.96527 1.22071 0.95884 0.99619 0.98517 1.22771 0.99688 0.97768 0.97413 1.21759 0.93007 0.97636 0.81673 0.88696 1.45084 1.17075 1.70041 1.07895 1.16067 0.81706 0.78682 0.83742 1.90861 1.53268 1.55872 1.48389 1.45147 1.19817 1.67555 1.04804 1.20829 0.80108 0.98092 0.95087 1.19038 0.95248 0.92794 0.90139 1.20283 1.05803 0.95202 1.32494 0.92335 1.24976 0.94680 0.97845 0.95473 1.69964 1.26313 1.12409 1.42308 0.86702 0.80471 0.79381 0.81663 1.20317 1.21284 1.20219 1.23014 1.07729 0.92515 1.01539 1.22489 0.92911 1.01057 1.02139 0.92843 0.92912 0.92851 0.91819 0.91497 0.91513 0.91789 0.91764 0.91928 0.91512 0.91206 0.77452 0.77172 0.91278 0.94809 0.92795 0.91673 0.90439 0.89848 0.91660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.79 37.16 0.36 -0.91 16 2 C -0.12 -1.19 5.32 -26.73 -0.14 -1.34 16 3 C -0.10 -0.96 2.48 -88.95 -0.22 -1.18 16 4 H 0.08 0.71 8.02 -51.93 -0.42 0.30 16 5 C -0.12 -0.98 5.69 -25.61 -0.15 -1.12 16 6 C -0.12 -1.11 6.80 -25.61 -0.17 -1.29 16 7 C -0.14 -1.59 6.51 -25.08 -0.16 -1.75 16 8 C 0.17 2.12 2.69 -65.93 -0.18 1.94 16 9 H 0.10 1.45 7.46 -51.93 -0.39 1.06 16 10 N -0.75 -10.76 5.18 -56.72 -0.29 -11.06 16 11 C 0.70 13.57 8.57 -86.91 -0.74 12.82 16 12 O -0.60 -14.14 15.99 5.29 0.08 -14.05 16 13 N -0.72 -14.32 5.48 -65.23 -0.36 -14.68 16 14 C 0.18 4.24 5.50 -4.04 -0.02 4.22 16 15 C 0.03 0.68 1.38 -155.66 -0.21 0.46 16 16 C -0.50 -12.88 8.63 -34.44 -0.30 -13.18 16 17 H 0.06 1.47 7.82 -52.49 -0.41 1.06 16 18 C 0.07 1.98 5.39 -17.82 -0.10 1.89 16 19 N -0.87 -24.41 12.91 55.43 0.72 -23.69 16 20 Si 0.89 20.61 29.55 -169.99 -5.02 15.59 16 21 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 22 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 C -0.21 -4.40 9.96 -26.69 -0.27 -4.67 16 25 C -0.15 -3.40 9.42 -26.69 -0.25 -3.65 16 26 H 0.05 0.40 7.62 -51.93 -0.40 0.01 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.65 7.95 -51.93 -0.41 0.24 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.07 0.54 7.71 -51.93 -0.40 0.14 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.39 4.67 8.58 -40.82 -0.35 4.31 16 38 H 0.39 7.11 8.38 -40.82 -0.34 6.77 16 39 H 0.07 1.85 8.14 -51.93 -0.42 1.43 16 40 H 0.03 0.78 8.09 -51.93 -0.42 0.36 16 41 H 0.26 7.07 8.32 -40.82 -0.34 6.73 16 42 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 43 H 0.08 1.59 8.14 -51.93 -0.42 1.16 16 44 H 0.08 2.03 8.14 -51.93 -0.42 1.61 16 45 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 364.37 15.07 5.49 5.49 Total: -1.00 -29.73 364.37 -10.10 -39.83 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: -8.17 Total: 10.34 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: -2.55 Total: -7.77 kcal Atomic # 7 Polarization: -49.49 SS G_CDS: 0.06 Total: -49.43 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: 0.08 Total: -14.05 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.73 -10.10 -39.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430839126.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.379 kcal (2) G-P(sol) polarization free energy of solvation -29.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds