Wall clock time and date at job start Tue Mar 31 2020 02:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.47280 * 2 1 4 4 H 1.09003 * 110.53420 * 52.38388 * 3 2 1 5 5 C 1.54261 * 110.48399 * 289.77331 * 3 2 1 6 6 C 1.53876 * 106.59704 * 217.70879 * 5 3 2 7 7 C 1.54261 * 106.59615 * 0.02562 * 6 5 3 8 8 C 1.54883 * 104.20162 * 23.60761 * 7 6 5 9 9 H 1.09003 * 110.91494 * 80.44151 * 8 7 6 10 10 N 1.46500 * 110.75916 * 203.74450 * 8 7 6 11 11 C 1.34775 * 119.99860 * 268.32329 * 10 8 7 12 12 O 1.21589 * 120.00194 * 0.02562 * 11 10 8 13 13 N 1.34781 * 119.99758 * 179.72546 * 11 10 8 14 14 C 1.46494 * 119.99696 * 180.27923 * 13 11 10 15 15 C 1.53007 * 109.47028 * 178.28721 * 14 13 11 16 16 C 1.50694 * 115.54797 * 65.13833 * 15 14 13 17 17 H 1.07996 * 120.00053 * 265.40390 * 16 15 14 18 18 C 1.37874 * 119.99735 * 85.41234 * 16 15 14 19 19 N 1.31513 * 120.00253 * 353.54891 * 18 16 15 20 20 Si 1.86803 * 119.99726 * 173.55448 * 18 16 15 21 21 H 1.48499 * 109.47158 * 59.99823 * 20 18 16 22 22 H 1.48502 * 109.47043 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47091 * 299.99511 * 20 18 16 24 24 C 1.53001 * 117.49622 * 279.47076 * 15 14 13 25 25 C 1.53001 * 117.49859 * 210.81257 * 15 14 13 26 26 H 1.09005 * 109.46995 * 60.00159 * 1 2 3 27 27 H 1.08995 * 109.47371 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46964 * 300.00527 * 1 2 3 29 29 H 1.09004 * 109.47131 * 239.99740 * 2 1 3 30 30 H 1.08997 * 109.46684 * 119.99940 * 2 1 3 31 31 H 1.08997 * 110.03767 * 336.99609 * 5 3 2 32 32 H 1.09003 * 110.03558 * 98.38140 * 5 3 2 33 33 H 1.08998 * 110.02909 * 119.28694 * 6 5 3 34 34 H 1.08995 * 110.03379 * 240.71827 * 6 5 3 35 35 H 1.09000 * 110.48704 * 264.92823 * 7 6 5 36 36 H 1.09003 * 110.49068 * 142.29007 * 7 6 5 37 37 H 0.96998 * 119.99846 * 88.32880 * 10 8 7 38 38 H 0.97002 * 119.99831 * 0.27375 * 13 11 10 39 39 H 1.08994 * 109.47141 * 298.28510 * 14 13 11 40 40 H 1.09003 * 109.47422 * 58.28572 * 14 13 11 41 41 H 0.97000 * 120.00393 * 185.06571 * 19 18 16 42 42 H 1.08999 * 117.49867 * 359.97438 * 24 15 14 43 43 H 1.08996 * 117.49923 * 145.01775 * 24 15 14 44 44 H 1.09000 * 117.49819 * 214.97828 * 25 15 14 45 45 H 1.09004 * 117.49543 * 359.97390 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5801 2.0107 0.8086 5 6 1.7591 2.1145 -1.3599 6 6 2.9739 3.0073 -1.6683 7 6 3.9508 2.8462 -0.4853 8 6 3.5838 1.4712 0.1260 9 1 4.0334 0.6589 -0.4452 10 7 3.9912 1.4024 1.5315 11 6 5.2059 0.9184 1.8581 12 8 5.9638 0.5393 0.9862 13 7 5.5828 0.8603 3.1508 14 6 6.9055 0.3399 3.5054 15 6 7.0965 0.4224 5.0212 16 6 6.1779 -0.4472 5.8403 17 1 5.2599 -0.0395 6.2370 18 6 6.5095 -1.7632 6.0832 19 7 7.5597 -2.2956 5.4975 20 14 5.4668 -2.7900 7.2443 21 1 4.0756 -2.8596 6.7297 22 1 6.0301 -4.1611 7.3339 23 1 5.4656 -2.1658 8.5917 24 6 7.4989 1.7761 5.6099 25 6 8.5186 0.6364 5.5435 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6466 1.3563 -2.1349 32 1 0.8555 2.7209 -1.2972 33 1 3.4508 2.6823 -2.5929 34 1 2.6603 4.0475 -1.7550 35 1 3.7997 3.6409 0.2452 36 1 4.9817 2.8433 -0.8395 37 1 3.3867 1.7052 2.2270 38 1 4.9783 1.1632 3.8464 39 1 6.9850 -0.6989 3.1852 40 1 7.6742 0.9328 3.0095 41 1 7.7511 -3.2399 5.6099 42 1 7.6280 2.6078 4.9172 43 1 7.0995 2.0376 6.5897 44 1 8.7897 0.1485 6.4797 45 1 9.3182 0.7180 4.8071 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430839126.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:43:23 Heat of formation + Delta-G solvation = -54.014483 kcal Electronic energy + Delta-G solvation = -22388.795322 eV Core-core repulsion = 19211.930441 eV Total energy + Delta-G solvation = -3176.864880 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.15227 -39.45653 -38.38606 -35.01540 -34.63342 -33.97629 -33.83971 -29.03931 -28.47383 -27.71786 -26.64410 -23.51483 -22.97098 -22.01828 -21.50916 -21.22599 -20.58142 -19.07919 -18.10021 -17.50521 -16.69347 -16.30829 -16.16903 -15.97402 -15.64301 -15.19017 -15.01095 -14.44108 -14.41720 -14.12231 -13.88708 -13.68858 -13.45489 -13.18568 -12.92417 -12.78877 -12.65437 -12.39099 -12.32938 -12.05271 -12.03356 -11.75132 -11.53617 -11.47971 -11.35664 -11.23255 -11.19872 -10.85158 -10.44854 -10.19034 -10.02525 -9.53853 -8.08290 -6.21612 1.43873 1.45179 1.51790 1.87438 2.27273 2.43424 3.19709 3.34181 3.55520 3.65891 3.71773 3.89691 4.25941 4.26534 4.36585 4.46187 4.51716 4.57388 4.58776 4.66795 4.70974 4.74486 4.75357 4.79167 4.93961 4.99717 5.02866 5.09523 5.16474 5.23377 5.25197 5.27964 5.29278 5.36073 5.44469 5.56129 5.59913 5.62112 5.70340 5.76592 5.80258 6.20192 6.38088 6.85117 7.28022 7.47717 7.72896 8.99151 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.018690 B = 0.004194 C = 0.003636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.805771 B = 6675.131810 C = 7697.962255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.119 4.119 3 C -0.087 4.087 4 H 0.094 0.906 5 C -0.110 4.110 6 C -0.117 4.117 7 C -0.135 4.135 8 C 0.156 3.844 9 H 0.064 0.936 10 N -0.725 5.725 11 C 0.695 3.305 12 O -0.648 6.648 13 N -0.716 5.716 14 C 0.200 3.800 15 C 0.006 3.994 16 C -0.504 4.504 17 H 0.064 0.936 18 C 0.025 3.975 19 N -0.908 5.908 20 Si 0.950 3.050 21 H -0.272 1.272 22 H -0.292 1.292 23 H -0.269 1.269 24 C -0.175 4.175 25 C -0.159 4.159 26 H 0.067 0.933 27 H 0.051 0.949 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.044 0.956 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.063 0.937 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.044 0.956 37 H 0.408 0.592 38 H 0.406 0.594 39 H 0.024 0.976 40 H 0.030 0.970 41 H 0.258 0.742 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.064 0.936 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.713 10.619 -10.189 20.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.157 4.157 3 C -0.107 4.107 4 H 0.112 0.888 5 C -0.148 4.148 6 C -0.155 4.155 7 C -0.174 4.174 8 C 0.051 3.949 9 H 0.082 0.918 10 N -0.380 5.380 11 C 0.395 3.605 12 O -0.531 6.531 13 N -0.369 5.369 14 C 0.075 3.925 15 C 0.005 3.995 16 C -0.542 4.542 17 H 0.082 0.918 18 C -0.176 4.176 19 N -0.546 5.546 20 Si 0.776 3.224 21 H -0.197 1.197 22 H -0.218 1.218 23 H -0.194 1.194 24 C -0.212 4.212 25 C -0.198 4.198 26 H 0.086 0.914 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.105 0.895 33 H 0.082 0.918 34 H 0.100 0.900 35 H 0.093 0.907 36 H 0.063 0.937 37 H 0.245 0.755 38 H 0.241 0.759 39 H 0.042 0.958 40 H 0.048 0.952 41 H 0.067 0.933 42 H 0.106 0.894 43 H 0.106 0.894 44 H 0.083 0.917 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.878 10.108 -10.921 20.348 hybrid contribution -0.209 -0.937 1.240 1.568 sum -14.087 9.171 -9.681 19.398 Atomic orbital electron populations 1.21735 0.94176 1.01806 1.02559 1.21564 0.97116 0.95708 1.01273 1.22249 0.91916 0.96729 0.99759 0.88819 1.22140 0.98496 0.98776 0.95393 1.22053 0.95372 1.00987 0.97125 1.22723 0.99105 0.96918 0.98643 1.21950 0.95351 0.97534 0.80112 0.91809 1.44939 1.15370 1.68402 1.09326 1.16243 0.82706 0.78540 0.82989 1.90831 1.55017 1.57757 1.49490 1.44913 1.19014 1.67550 1.05419 1.20375 0.81724 0.95489 0.94908 1.19051 0.95454 0.94989 0.89968 1.20614 1.06092 0.95488 1.31963 0.91775 1.25709 0.95821 0.99221 0.96855 1.70102 1.28104 1.12360 1.44026 0.85744 0.79044 0.77578 0.80012 1.19702 1.21828 1.19387 1.22996 1.04568 0.91628 1.01999 1.22433 0.93145 1.02753 1.01434 0.91390 0.93022 0.92267 0.92460 0.93746 0.91167 0.89510 0.91840 0.90035 0.90661 0.93703 0.75550 0.75866 0.95787 0.95158 0.93262 0.89428 0.89449 0.91729 0.91223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.79 71.98 0.70 -1.41 16 2 C -0.12 -2.26 5.32 30.60 0.16 -2.10 16 3 C -0.09 -1.53 2.48 -9.71 -0.02 -1.55 16 4 H 0.09 1.39 8.02 -2.39 -0.02 1.37 16 5 C -0.11 -1.52 5.69 31.32 0.18 -1.34 16 6 C -0.12 -1.85 6.80 31.32 0.21 -1.64 16 7 C -0.13 -2.98 6.51 31.67 0.21 -2.78 16 8 C 0.16 3.92 2.69 46.29 0.12 4.05 16 9 H 0.06 2.03 7.46 -2.39 -0.02 2.01 16 10 N -0.73 -20.51 5.18 -451.62 -2.34 -22.85 16 11 C 0.70 27.37 8.57 179.05 1.53 28.90 16 12 O -0.65 -31.46 15.99 -4.00 -0.06 -31.53 16 13 N -0.72 -28.45 5.48 -478.53 -2.62 -31.07 16 14 C 0.20 9.50 5.50 86.38 0.48 9.97 16 15 C 0.01 0.29 1.38 -52.93 -0.07 0.22 16 16 C -0.50 -25.78 8.63 25.60 0.22 -25.56 16 17 H 0.06 3.14 7.82 -2.91 -0.02 3.12 16 18 C 0.02 1.31 5.39 84.65 0.46 1.77 16 19 N -0.91 -52.00 12.91 21.45 0.28 -51.72 16 20 Si 0.95 42.34 29.55 68.60 2.03 44.36 16 21 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 22 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 23 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 24 C -0.17 -6.98 9.96 30.62 0.30 -6.67 16 25 C -0.16 -7.34 9.42 30.62 0.29 -7.05 16 26 H 0.07 0.80 7.62 -2.38 -0.02 0.78 16 27 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.06 1.14 7.95 -2.39 -0.02 1.12 16 30 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.07 0.95 7.71 -2.39 -0.02 0.93 16 32 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.41 8.98 8.58 -92.71 -0.80 8.19 16 38 H 0.41 14.17 8.38 -92.71 -0.78 13.40 16 39 H 0.02 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.03 1.43 8.09 -2.39 -0.02 1.42 16 41 H 0.26 14.34 8.32 -92.71 -0.77 13.57 16 42 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 43 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 44 H 0.06 3.19 8.14 -2.39 -0.02 3.17 16 45 H 0.07 3.09 8.14 -2.38 -0.02 3.07 16 Total: -1.00 -65.78 364.37 1.44 -64.34 By element: Atomic # 1 Polarization: 34.25 SS G_CDS: -0.61 Total: 33.64 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: 4.77 Total: -5.18 kcal Atomic # 7 Polarization: -100.95 SS G_CDS: -4.69 Total: -105.64 kcal Atomic # 8 Polarization: -31.46 SS G_CDS: -0.06 Total: -31.53 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.36 kcal Total: -65.78 1.44 -64.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430839126.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.329 kcal (2) G-P(sol) polarization free energy of solvation -65.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds