Wall clock time and date at job start Tue Mar 31 2020 02:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47484 * 2 1 4 4 H 1.09002 * 109.87406 * 306.65160 * 3 2 1 5 5 C 1.54324 * 110.01578 * 185.54479 * 3 2 1 6 6 H 1.08999 * 110.71880 * 144.16324 * 5 3 2 7 7 C 1.53001 * 110.71743 * 21.07010 * 5 3 2 8 8 C 1.55151 * 102.94292 * 262.70393 * 5 3 2 9 9 C 1.54907 * 101.58562 * 324.50100 * 8 5 3 10 10 N 1.47023 * 109.87781 * 67.65791 * 3 2 1 11 11 C 1.34773 * 125.65195 * 300.36748 * 10 3 2 12 12 O 1.21587 * 120.00290 * 355.77716 * 11 10 3 13 13 N 1.34780 * 120.00023 * 175.77871 * 11 10 3 14 14 C 1.46500 * 120.00111 * 174.69505 * 13 11 10 15 15 C 1.52999 * 109.47108 * 185.46500 * 14 13 11 16 16 C 1.50695 * 115.55230 * 304.82161 * 15 14 13 17 17 H 1.08001 * 119.99808 * 146.75173 * 16 15 14 18 18 C 1.37879 * 120.00051 * 326.75510 * 16 15 14 19 19 N 1.31510 * 119.99952 * 165.80533 * 18 16 15 20 20 Si 1.86804 * 119.99726 * 345.79908 * 18 16 15 21 21 H 1.48501 * 109.46835 * 95.46975 * 20 18 16 22 22 H 1.48498 * 109.47016 * 215.46318 * 20 18 16 23 23 H 1.48495 * 109.47114 * 335.46949 * 20 18 16 24 24 C 1.52999 * 117.49680 * 159.14889 * 15 14 13 25 25 C 1.52999 * 117.49798 * 90.49374 * 15 14 13 26 26 H 1.09005 * 109.46778 * 277.32167 * 1 2 3 27 27 H 1.08999 * 109.47168 * 37.31572 * 1 2 3 28 28 H 1.08997 * 109.47033 * 157.32407 * 1 2 3 29 29 H 1.09006 * 109.47007 * 240.00336 * 2 1 3 30 30 H 1.09000 * 109.47657 * 120.00431 * 2 1 3 31 31 H 1.09008 * 109.47110 * 59.99577 * 7 5 3 32 32 H 1.08996 * 109.46984 * 179.97438 * 7 5 3 33 33 H 1.08994 * 109.47030 * 299.99829 * 7 5 3 34 34 H 1.08997 * 111.00153 * 82.57401 * 8 5 3 35 35 H 1.08993 * 111.00256 * 206.38277 * 8 5 3 36 36 H 1.09007 * 110.36494 * 278.17077 * 9 8 5 37 37 H 1.08991 * 110.36770 * 155.84961 * 9 8 5 38 38 H 0.96999 * 120.00100 * 354.69165 * 13 11 10 39 39 H 1.08998 * 109.46980 * 305.46477 * 14 13 11 40 40 H 1.08996 * 109.47377 * 65.46181 * 14 13 11 41 41 H 0.97005 * 119.99923 * 180.02562 * 19 18 16 42 42 H 1.08997 * 117.50253 * 0.02562 * 24 15 14 43 43 H 1.09001 * 117.49840 * 145.02063 * 24 15 14 44 44 H 1.09006 * 117.50180 * 214.97818 * 25 15 14 45 45 H 1.09008 * 117.49852 * 359.97132 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5867 1.9958 -0.8224 5 6 3.5768 1.4593 -0.1401 6 1 3.8999 2.3087 -0.7419 7 6 4.0795 0.1471 -0.7455 8 6 4.0580 1.6067 1.3275 9 6 2.9631 2.5265 1.9230 10 7 1.7112 2.0890 1.2788 11 6 0.4705 2.2588 1.7771 12 8 -0.4986 1.9305 1.1202 13 7 0.3040 2.7925 3.0034 14 6 -1.0436 3.0848 3.4982 15 6 -0.9474 3.8039 4.8453 16 6 -0.1519 3.0903 5.9077 17 1 0.4156 3.6582 6.6301 18 6 -0.1484 1.7124 5.9575 19 7 0.7464 1.0830 6.6873 20 14 -1.4149 0.7397 4.9883 21 1 -0.8332 0.3308 3.6846 22 1 -1.8048 -0.4694 5.7572 23 1 -2.6133 1.5843 4.7525 24 6 -2.1599 4.6194 5.2989 25 6 -0.8903 5.3327 4.8274 26 1 -0.3633 0.1310 1.0193 27 1 -0.3633 0.8173 -0.6230 28 1 -0.3633 -0.9482 -0.3962 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 3.6374 0.0094 -1.7323 32 1 5.1652 0.1810 -0.8356 33 1 3.7940 -0.6836 -0.1003 34 1 4.0737 0.6408 1.8323 35 1 5.0368 2.0842 1.3717 36 1 3.1702 3.5689 1.6805 37 1 2.9011 2.3925 3.0029 38 1 1.0763 2.9831 3.5584 39 1 -1.5632 3.7219 2.7826 40 1 -1.5952 2.1529 3.6224 41 1 0.7491 0.1136 6.7220 42 1 -3.0262 4.6433 4.6379 43 1 -2.3820 4.6400 6.3658 44 1 -0.2776 5.8225 5.5844 45 1 -0.9208 5.8262 3.8559 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431054297.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:57:56 Heat of formation + Delta-G solvation = 17.329127 kcal Electronic energy + Delta-G solvation = -23856.489172 eV Core-core repulsion = 20682.717982 eV Total energy + Delta-G solvation = -3173.771189 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.32334 -38.11069 -36.80599 -34.02181 -32.62916 -32.28497 -32.18726 -28.81447 -27.15981 -25.90658 -24.75921 -23.21779 -22.18288 -21.45485 -19.92306 -19.35741 -18.63502 -17.78073 -16.53964 -16.05061 -15.68548 -15.41411 -14.79622 -14.20689 -14.04991 -13.78265 -13.43837 -13.34826 -13.00236 -12.87802 -12.61997 -12.39738 -12.30393 -12.03670 -11.74257 -11.64480 -11.22563 -10.99510 -10.89407 -10.64438 -10.60939 -10.48928 -10.35075 -10.28089 -9.82809 -9.58280 -9.37417 -9.20151 -8.91048 -8.41632 -8.19508 -7.87940 -6.26463 -4.19871 3.08605 3.33536 3.40925 3.44187 3.77337 4.34318 4.37454 4.56523 4.64672 4.76041 4.88929 5.13903 5.30029 5.34221 5.35519 5.39582 5.58581 5.60282 5.66509 5.68278 5.79073 5.84587 5.92370 5.94105 5.98443 6.11642 6.16203 6.18626 6.25834 6.28659 6.38111 6.47115 6.51121 6.61708 6.66590 6.74488 6.87463 7.04298 7.11655 7.36197 7.60524 7.65186 8.38394 8.63623 8.80249 9.23510 9.39515 10.84141 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.019593 B = 0.006081 C = 0.006004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.740492 B = 4603.145152 C = 4662.655478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.132 4.132 3 C 0.162 3.838 4 H 0.069 0.931 5 C -0.102 4.102 6 H 0.082 0.918 7 C -0.141 4.141 8 C -0.126 4.126 9 C 0.098 3.902 10 N -0.635 5.635 11 C 0.712 3.288 12 O -0.588 6.588 13 N -0.718 5.718 14 C 0.160 3.840 15 C -0.006 4.006 16 C -0.491 4.491 17 H 0.079 0.921 18 C 0.086 3.914 19 N -0.883 5.883 20 Si 0.887 3.113 21 H -0.272 1.272 22 H -0.303 1.303 23 H -0.265 1.265 24 C -0.201 4.201 25 C -0.187 4.187 26 H 0.077 0.923 27 H 0.062 0.938 28 H 0.024 0.976 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.064 0.936 37 H 0.079 0.921 38 H 0.406 0.594 39 H 0.053 0.947 40 H 0.056 0.944 41 H 0.266 0.734 42 H 0.069 0.931 43 H 0.087 0.913 44 H 0.083 0.917 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.957 0.581 -12.700 14.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.170 4.170 3 C 0.058 3.942 4 H 0.087 0.913 5 C -0.121 4.121 6 H 0.100 0.900 7 C -0.199 4.199 8 C -0.164 4.164 9 C -0.025 4.025 10 N -0.374 5.374 11 C 0.414 3.586 12 O -0.468 6.468 13 N -0.374 5.374 14 C 0.037 3.963 15 C -0.007 4.007 16 C -0.527 4.527 17 H 0.097 0.903 18 C -0.119 4.119 19 N -0.519 5.519 20 Si 0.719 3.281 21 H -0.199 1.199 22 H -0.231 1.231 23 H -0.191 1.191 24 C -0.240 4.240 25 C -0.225 4.225 26 H 0.096 0.904 27 H 0.081 0.919 28 H 0.043 0.957 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.083 0.917 37 H 0.097 0.903 38 H 0.243 0.757 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.088 0.912 43 H 0.106 0.894 44 H 0.101 0.899 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 6.230 0.198 -13.052 14.464 hybrid contribution -0.336 -0.444 -0.060 0.560 sum 5.894 -0.247 -13.111 14.377 Atomic orbital electron populations 1.22196 0.94076 0.99016 1.04700 1.22053 0.97707 0.95800 1.01428 1.21447 0.93709 0.93349 0.85724 0.91334 1.22250 0.94029 0.99043 0.96747 0.89965 1.21849 1.00550 0.96678 1.00805 1.22829 0.98048 1.00559 0.94979 1.22257 0.83827 0.97905 0.98511 1.47532 1.04365 1.63221 1.22265 1.15481 0.82071 0.79072 0.81954 1.90908 1.38767 1.56358 1.60723 1.45136 1.10401 1.66688 1.15128 1.21093 0.82290 0.98878 0.94058 1.19536 0.97913 0.89770 0.93474 1.20289 1.28445 0.90955 1.13046 0.90312 1.24931 0.94523 0.97562 0.94836 1.69936 1.32379 1.08976 1.40561 0.86977 0.83116 0.78693 0.79358 1.19874 1.23104 1.19084 1.23099 0.91662 1.08580 1.00613 1.22824 1.01944 0.96933 1.00770 0.90393 0.91900 0.95741 0.91479 0.92236 0.92349 0.92563 0.91873 0.90454 0.90078 0.91731 0.90262 0.75713 0.92910 0.92645 0.92398 0.91212 0.89403 0.89873 0.90947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 8.05 37.16 0.30 -2.21 16 2 C -0.13 -1.91 4.36 -26.73 -0.12 -2.02 16 3 C 0.16 2.27 3.00 -66.95 -0.20 2.07 16 4 H 0.07 0.99 7.99 -51.93 -0.42 0.58 16 5 C -0.10 -1.05 3.48 -88.79 -0.31 -1.36 16 6 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 7 C -0.14 -1.24 7.93 37.16 0.29 -0.95 16 8 C -0.13 -1.36 6.53 -24.59 -0.16 -1.52 16 9 C 0.10 1.34 6.71 -2.53 -0.02 1.32 16 10 N -0.63 -10.56 3.08 -168.69 -0.52 -11.08 16 11 C 0.71 14.64 7.83 -86.92 -0.68 13.96 16 12 O -0.59 -13.35 11.34 5.29 0.06 -13.29 16 13 N -0.72 -15.24 4.80 -65.23 -0.31 -15.55 16 14 C 0.16 3.61 4.36 -4.04 -0.02 3.60 16 15 C -0.01 -0.13 1.51 -155.66 -0.23 -0.36 16 16 C -0.49 -12.92 8.85 -34.44 -0.30 -13.22 16 17 H 0.08 2.24 8.06 -52.49 -0.42 1.82 16 18 C 0.09 2.35 5.31 -17.82 -0.09 2.26 16 19 N -0.88 -25.40 13.96 55.43 0.77 -24.63 16 20 Si 0.89 22.52 23.79 -169.99 -4.04 18.48 16 21 H -0.27 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 23 H -0.26 -6.58 6.45 56.52 0.36 -6.22 16 24 C -0.20 -4.15 9.96 -26.70 -0.27 -4.42 16 25 C -0.19 -3.71 9.93 -26.70 -0.27 -3.97 16 26 H 0.08 1.69 5.68 -51.94 -0.30 1.39 16 27 H 0.06 1.15 6.78 -51.93 -0.35 0.80 16 28 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.80 6.28 -51.93 -0.33 0.47 16 30 H 0.06 0.92 7.86 -51.93 -0.41 0.51 16 31 H 0.06 0.48 7.56 -51.92 -0.39 0.08 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.60 6.74 -51.93 -0.35 0.25 16 34 H 0.08 0.89 8.02 -51.93 -0.42 0.47 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.08 1.19 7.08 -51.93 -0.37 0.82 16 38 H 0.41 8.48 6.36 -40.82 -0.26 8.22 16 39 H 0.05 1.14 8.09 -51.93 -0.42 0.72 16 40 H 0.06 1.37 2.57 -51.93 -0.13 1.24 16 41 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 42 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 43 H 0.09 1.82 8.14 -51.93 -0.42 1.39 16 44 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 45 H 0.07 1.31 8.14 -51.92 -0.42 0.89 16 LS Contribution 336.10 15.07 5.06 5.06 Total: -1.00 -29.90 336.10 -8.59 -38.49 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: -7.54 Total: 9.36 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: -2.07 Total: -6.84 kcal Atomic # 7 Polarization: -51.20 SS G_CDS: -0.06 Total: -51.26 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: 0.06 Total: -13.29 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -4.04 Total: 18.48 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.90 -8.59 -38.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431054297.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.818 kcal (2) G-P(sol) polarization free energy of solvation -29.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds