Wall clock time and date at job start Tue Mar 31 2020 02:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47484 * 2 1 4 4 H 1.09002 * 109.87406 * 306.65160 * 3 2 1 5 5 C 1.54324 * 110.01578 * 185.54479 * 3 2 1 6 6 H 1.08999 * 110.71880 * 144.16324 * 5 3 2 7 7 C 1.53001 * 110.71743 * 21.07010 * 5 3 2 8 8 C 1.55151 * 102.94292 * 262.70393 * 5 3 2 9 9 C 1.54907 * 101.58562 * 324.50100 * 8 5 3 10 10 N 1.47023 * 109.87781 * 67.65791 * 3 2 1 11 11 C 1.34773 * 125.65195 * 300.36748 * 10 3 2 12 12 O 1.21587 * 120.00290 * 355.77716 * 11 10 3 13 13 N 1.34780 * 120.00023 * 175.77871 * 11 10 3 14 14 C 1.46500 * 120.00111 * 174.69505 * 13 11 10 15 15 C 1.52999 * 109.47108 * 185.46500 * 14 13 11 16 16 C 1.50695 * 115.55230 * 304.82161 * 15 14 13 17 17 H 1.08001 * 119.99808 * 146.75173 * 16 15 14 18 18 C 1.37879 * 120.00051 * 326.75510 * 16 15 14 19 19 N 1.31510 * 119.99952 * 165.80533 * 18 16 15 20 20 Si 1.86804 * 119.99726 * 345.79908 * 18 16 15 21 21 H 1.48501 * 109.46835 * 95.46975 * 20 18 16 22 22 H 1.48498 * 109.47016 * 215.46318 * 20 18 16 23 23 H 1.48495 * 109.47114 * 335.46949 * 20 18 16 24 24 C 1.52999 * 117.49680 * 159.14889 * 15 14 13 25 25 C 1.52999 * 117.49798 * 90.49374 * 15 14 13 26 26 H 1.09005 * 109.46778 * 277.32167 * 1 2 3 27 27 H 1.08999 * 109.47168 * 37.31572 * 1 2 3 28 28 H 1.08997 * 109.47033 * 157.32407 * 1 2 3 29 29 H 1.09006 * 109.47007 * 240.00336 * 2 1 3 30 30 H 1.09000 * 109.47657 * 120.00431 * 2 1 3 31 31 H 1.09008 * 109.47110 * 59.99577 * 7 5 3 32 32 H 1.08996 * 109.46984 * 179.97438 * 7 5 3 33 33 H 1.08994 * 109.47030 * 299.99829 * 7 5 3 34 34 H 1.08997 * 111.00153 * 82.57401 * 8 5 3 35 35 H 1.08993 * 111.00256 * 206.38277 * 8 5 3 36 36 H 1.09007 * 110.36494 * 278.17077 * 9 8 5 37 37 H 1.08991 * 110.36770 * 155.84961 * 9 8 5 38 38 H 0.96999 * 120.00100 * 354.69165 * 13 11 10 39 39 H 1.08998 * 109.46980 * 305.46477 * 14 13 11 40 40 H 1.08996 * 109.47377 * 65.46181 * 14 13 11 41 41 H 0.97005 * 119.99923 * 180.02562 * 19 18 16 42 42 H 1.08997 * 117.50253 * 0.02562 * 24 15 14 43 43 H 1.09001 * 117.49840 * 145.02063 * 24 15 14 44 44 H 1.09006 * 117.50180 * 214.97818 * 25 15 14 45 45 H 1.09008 * 117.49852 * 359.97132 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5867 1.9958 -0.8224 5 6 3.5768 1.4593 -0.1401 6 1 3.8999 2.3087 -0.7419 7 6 4.0795 0.1471 -0.7455 8 6 4.0580 1.6067 1.3275 9 6 2.9631 2.5265 1.9230 10 7 1.7112 2.0890 1.2788 11 6 0.4705 2.2588 1.7771 12 8 -0.4986 1.9305 1.1202 13 7 0.3040 2.7925 3.0034 14 6 -1.0436 3.0848 3.4982 15 6 -0.9474 3.8039 4.8453 16 6 -0.1519 3.0903 5.9077 17 1 0.4156 3.6582 6.6301 18 6 -0.1484 1.7124 5.9575 19 7 0.7464 1.0830 6.6873 20 14 -1.4149 0.7397 4.9883 21 1 -0.8332 0.3308 3.6846 22 1 -1.8048 -0.4694 5.7572 23 1 -2.6133 1.5843 4.7525 24 6 -2.1599 4.6194 5.2989 25 6 -0.8903 5.3327 4.8274 26 1 -0.3633 0.1310 1.0193 27 1 -0.3633 0.8173 -0.6230 28 1 -0.3633 -0.9482 -0.3962 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 3.6374 0.0094 -1.7323 32 1 5.1652 0.1810 -0.8356 33 1 3.7940 -0.6836 -0.1003 34 1 4.0737 0.6408 1.8323 35 1 5.0368 2.0842 1.3717 36 1 3.1702 3.5689 1.6805 37 1 2.9011 2.3925 3.0029 38 1 1.0763 2.9831 3.5584 39 1 -1.5632 3.7219 2.7826 40 1 -1.5952 2.1529 3.6224 41 1 0.7491 0.1136 6.7220 42 1 -3.0262 4.6433 4.6379 43 1 -2.3820 4.6400 6.3658 44 1 -0.2776 5.8225 5.5844 45 1 -0.9208 5.8262 3.8559 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431054297.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:57:55 Heat of formation + Delta-G solvation = -0.972109 kcal Electronic energy + Delta-G solvation = -23857.282773 eV Core-core repulsion = 20682.717982 eV Total energy + Delta-G solvation = -3174.564790 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.66416 -39.56431 -38.41732 -35.49927 -34.39316 -33.93622 -33.38458 -29.92571 -28.78576 -27.48223 -26.30394 -24.36153 -23.43426 -23.05031 -21.25416 -21.10601 -19.86500 -19.32824 -18.24344 -17.75241 -17.21871 -16.96457 -16.08218 -15.80715 -15.32827 -15.26524 -14.90847 -14.75379 -14.59464 -14.23061 -14.02016 -13.86422 -13.62729 -13.42995 -13.02981 -12.83247 -12.63363 -12.56517 -12.35317 -12.16702 -11.98539 -11.81065 -11.64025 -11.44674 -11.35678 -11.34381 -11.30088 -10.85722 -10.68001 -10.40614 -9.77023 -9.35633 -8.41752 -6.33260 1.26118 1.34353 1.35347 1.70248 2.19170 2.24768 2.78129 3.13271 3.48327 3.57065 3.65123 3.86434 3.95980 4.10046 4.18707 4.21748 4.35879 4.42526 4.44142 4.47634 4.59435 4.69231 4.70365 4.75572 4.82719 4.91182 4.91616 4.94221 4.96415 5.03619 5.11861 5.14241 5.20019 5.28649 5.30943 5.46958 5.48597 5.53728 5.56928 5.62111 5.74655 6.16150 6.27556 6.65320 7.09179 7.26634 7.65856 8.72642 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.019593 B = 0.006081 C = 0.006004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.740492 B = 4603.145152 C = 4662.655478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.126 4.126 3 C 0.152 3.848 4 H 0.065 0.935 5 C -0.088 4.088 6 H 0.104 0.896 7 C -0.140 4.140 8 C -0.118 4.118 9 C 0.091 3.909 10 N -0.636 5.636 11 C 0.702 3.298 12 O -0.615 6.615 13 N -0.722 5.722 14 C 0.167 3.833 15 C -0.037 4.037 16 C -0.478 4.478 17 H 0.051 0.949 18 C 0.053 3.947 19 N -0.921 5.921 20 Si 0.935 3.065 21 H -0.291 1.291 22 H -0.310 1.310 23 H -0.256 1.256 24 C -0.191 4.191 25 C -0.160 4.160 26 H 0.032 0.968 27 H 0.051 0.949 28 H 0.037 0.963 29 H 0.100 0.900 30 H 0.046 0.954 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.052 0.948 34 H 0.066 0.934 35 H 0.112 0.888 36 H 0.083 0.917 37 H 0.058 0.942 38 H 0.405 0.595 39 H 0.064 0.936 40 H 0.031 0.969 41 H 0.265 0.735 42 H 0.090 0.910 43 H 0.085 0.915 44 H 0.086 0.914 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.060 1.594 -14.707 16.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.164 4.164 3 C 0.049 3.951 4 H 0.083 0.917 5 C -0.107 4.107 6 H 0.122 0.878 7 C -0.197 4.197 8 C -0.156 4.156 9 C -0.031 4.031 10 N -0.374 5.374 11 C 0.405 3.595 12 O -0.497 6.497 13 N -0.378 5.378 14 C 0.043 3.957 15 C -0.039 4.039 16 C -0.515 4.515 17 H 0.069 0.931 18 C -0.147 4.147 19 N -0.560 5.560 20 Si 0.767 3.233 21 H -0.219 1.219 22 H -0.239 1.239 23 H -0.181 1.181 24 C -0.230 4.230 25 C -0.198 4.198 26 H 0.051 0.949 27 H 0.070 0.930 28 H 0.056 0.944 29 H 0.119 0.881 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.130 0.870 36 H 0.102 0.898 37 H 0.076 0.924 38 H 0.242 0.758 39 H 0.082 0.918 40 H 0.049 0.951 41 H 0.075 0.925 42 H 0.109 0.891 43 H 0.104 0.896 44 H 0.104 0.896 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 7.351 1.227 -15.069 16.811 hybrid contribution -0.670 -0.693 0.551 1.110 sum 6.681 0.534 -14.518 15.990 Atomic orbital electron populations 1.22027 0.96492 0.99191 1.01517 1.22041 0.95317 0.96688 1.02346 1.21744 0.96627 0.92458 0.84297 0.91672 1.22260 0.90680 1.00989 0.96764 0.87798 1.21847 1.01916 0.95112 1.00841 1.22843 0.98345 0.99599 0.94831 1.22491 0.83494 0.99753 0.97399 1.47669 1.03964 1.62531 1.23204 1.15707 0.83176 0.78982 0.81677 1.90894 1.40186 1.57359 1.61253 1.45093 1.09873 1.67223 1.15561 1.20927 0.82909 0.97722 0.94160 1.19461 0.99981 0.91678 0.92730 1.20383 1.27641 0.90670 1.12828 0.93079 1.25307 0.95479 0.98376 0.95582 1.70008 1.34103 1.09075 1.42775 0.86230 0.82166 0.77587 0.77280 1.21870 1.23886 1.18110 1.23137 0.92089 1.06697 1.01064 1.22855 1.00725 0.94215 1.01964 0.94879 0.93045 0.94400 0.88149 0.93533 0.91357 0.90529 0.92870 0.91483 0.86961 0.89845 0.92371 0.75816 0.91813 0.95111 0.92519 0.89123 0.89600 0.89585 0.88531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.80 8.05 71.98 0.58 -4.22 16 2 C -0.13 -3.52 4.36 30.59 0.13 -3.39 16 3 C 0.15 4.02 3.00 45.34 0.14 4.16 16 4 H 0.07 1.78 7.99 -2.39 -0.02 1.76 16 5 C -0.09 -1.53 3.48 -9.61 -0.03 -1.57 16 6 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 7 C -0.14 -1.94 7.93 71.98 0.57 -1.36 16 8 C -0.12 -2.24 6.53 31.98 0.21 -2.03 16 9 C 0.09 2.37 6.71 86.85 0.58 2.95 16 10 N -0.64 -20.90 3.08 -805.88 -2.48 -23.38 16 11 C 0.70 29.27 7.83 179.05 1.40 30.67 16 12 O -0.61 -28.58 11.34 -3.99 -0.05 -28.63 16 13 N -0.72 -30.95 4.80 -478.54 -2.30 -33.25 16 14 C 0.17 7.47 4.36 86.38 0.38 7.85 16 15 C -0.04 -1.66 1.51 -52.93 -0.08 -1.74 16 16 C -0.48 -25.43 8.85 25.60 0.23 -25.20 16 17 H 0.05 2.97 8.06 -2.91 -0.02 2.94 16 18 C 0.05 2.97 5.31 84.66 0.45 3.42 16 19 N -0.92 -54.50 13.96 21.45 0.30 -54.20 16 20 Si 0.93 48.08 23.79 68.60 1.63 49.71 16 21 H -0.29 -15.75 7.11 99.48 0.71 -15.04 16 22 H -0.31 -16.05 7.11 99.48 0.71 -15.34 16 23 H -0.26 -12.58 6.45 99.48 0.64 -11.94 16 24 C -0.19 -7.47 9.96 30.62 0.30 -7.17 16 25 C -0.16 -5.94 9.93 30.62 0.30 -5.64 16 26 H 0.03 1.47 5.68 -2.60 -0.01 1.46 16 27 H 0.05 1.90 6.78 -2.39 -0.02 1.89 16 28 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.10 2.13 6.28 -2.38 -0.01 2.12 16 30 H 0.05 1.43 7.86 -2.39 -0.02 1.41 16 31 H 0.07 0.84 7.56 -2.38 -0.02 0.82 16 32 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.05 0.86 6.74 -2.39 -0.02 0.84 16 34 H 0.07 1.43 8.02 -2.39 -0.02 1.41 16 35 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 37 H 0.06 1.76 7.08 -2.39 -0.02 1.74 16 38 H 0.41 17.22 6.36 -92.71 -0.59 16.63 16 39 H 0.06 2.68 8.09 -2.39 -0.02 2.66 16 40 H 0.03 1.55 2.57 -2.39 -0.01 1.54 16 41 H 0.27 15.07 8.31 -92.70 -0.77 14.30 16 42 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 43 H 0.09 3.38 8.14 -2.39 -0.02 3.36 16 44 H 0.09 3.15 8.14 -2.38 -0.02 3.13 16 45 H 0.10 3.15 8.14 -2.38 -0.02 3.13 16 Total: -1.00 -66.94 336.10 2.58 -64.35 By element: Atomic # 1 Polarization: 28.34 SS G_CDS: 0.32 Total: 28.66 kcal Atomic # 6 Polarization: -8.43 SS G_CDS: 5.16 Total: -3.27 kcal Atomic # 7 Polarization: -106.35 SS G_CDS: -4.48 Total: -110.83 kcal Atomic # 8 Polarization: -28.58 SS G_CDS: -0.05 Total: -28.63 kcal Atomic # 14 Polarization: 48.08 SS G_CDS: 1.63 Total: 49.71 kcal Total: -66.94 2.58 -64.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431054297.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.380 kcal (2) G-P(sol) polarization free energy of solvation -66.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds