Wall clock time and date at job start Tue Mar 31 2020 02:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46999 * 2 1 4 4 C 1.52995 * 109.46865 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47086 * 179.97438 * 4 3 2 6 6 C 1.34784 * 119.99616 * 90.00161 * 5 4 3 7 7 O 1.21583 * 119.99558 * 185.96743 * 6 5 4 8 8 N 1.34775 * 120.00160 * 5.97023 * 6 5 4 9 9 C 1.46492 * 119.99837 * 185.01475 * 8 6 5 10 10 C 1.53004 * 109.47300 * 184.99369 * 9 8 6 11 11 C 1.50710 * 115.54713 * 54.49160 * 10 9 8 12 12 H 1.08001 * 119.99774 * 214.64231 * 11 10 9 13 13 C 1.37877 * 120.00010 * 34.36307 * 11 10 9 14 14 N 1.31519 * 119.99885 * 355.65984 * 13 11 10 15 15 Si 1.86793 * 119.99926 * 175.65739 * 13 11 10 16 16 H 1.48503 * 109.47459 * 0.02562 * 15 13 11 17 17 H 1.48496 * 109.47144 * 120.00243 * 15 13 11 18 18 H 1.48501 * 109.47207 * 240.00398 * 15 13 11 19 19 C 1.52993 * 117.50236 * 200.16319 * 10 9 8 20 20 C 1.52994 * 117.50174 * 268.82587 * 10 9 8 21 21 C 1.46493 * 120.00248 * 270.00422 * 5 4 3 22 22 C 1.53001 * 117.50029 * 196.54239 * 21 5 4 23 23 C 1.53001 * 117.50292 * 127.91639 * 21 5 4 24 24 H 1.08999 * 109.47149 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47085 * 300.00032 * 1 2 3 26 26 H 1.09001 * 109.47217 * 60.00276 * 1 2 3 27 27 H 1.09000 * 109.47213 * 240.00369 * 2 1 3 28 28 H 1.08997 * 109.46970 * 120.00171 * 2 1 3 29 29 H 1.09000 * 109.46836 * 60.00138 * 3 2 1 30 30 H 1.08997 * 109.47399 * 299.99908 * 3 2 1 31 31 H 1.09005 * 109.47305 * 60.00209 * 4 3 2 32 32 H 1.08997 * 109.47303 * 300.00293 * 4 3 2 33 33 H 0.97009 * 119.99820 * 5.01057 * 8 6 5 34 34 H 1.09001 * 109.47653 * 64.99340 * 9 8 6 35 35 H 1.09001 * 109.47429 * 304.99140 * 9 8 6 36 36 H 0.96997 * 119.99683 * 185.00134 * 14 13 11 37 37 H 1.09006 * 117.49558 * 215.00634 * 19 10 9 38 38 H 1.09002 * 117.49863 * 0.02562 * 19 10 9 39 39 H 1.09007 * 117.49796 * 359.97195 * 20 10 9 40 40 H 1.09000 * 117.50489 * 144.96814 * 20 10 9 41 41 H 1.09008 * 115.54957 * 342.24717 * 21 5 4 42 42 H 1.09000 * 117.49865 * 359.97438 * 22 21 5 43 43 H 1.09000 * 117.49974 * 145.02382 * 22 21 5 44 44 H 1.08992 * 117.50164 * 214.98250 * 23 21 5 45 45 H 1.09003 * 117.49593 * 359.97438 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4425 0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.2825 3.4598 1.1671 7 8 4.5829 4.6379 1.1693 8 7 4.1736 2.7898 2.3314 9 6 4.3088 3.5044 3.6030 10 6 4.2690 2.5019 4.7582 11 6 5.2677 1.3761 4.6765 12 1 5.0063 0.3947 5.0438 13 6 6.5129 1.5977 4.1276 14 7 6.7995 2.7670 3.5981 15 14 7.7928 0.2372 4.1361 16 1 7.2256 -0.9721 4.7850 17 1 8.1802 -0.0866 2.7396 18 1 8.9900 0.6886 4.8899 19 6 3.9221 3.0390 6.1481 20 6 2.9051 2.1926 5.3785 21 6 4.3029 3.5137 -1.2689 22 6 5.1606 4.7801 -1.2306 23 6 3.6521 4.8844 -1.4648 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6767 1.9564 -0.8900 31 1 3.9337 0.9286 -0.8892 32 1 3.9329 0.9288 0.8908 33 1 4.0057 1.8343 2.3273 34 1 3.4888 4.2145 3.7098 35 1 5.2579 4.0402 3.6196 36 1 7.6482 2.9005 3.1478 37 1 4.4163 2.5781 7.0035 38 1 3.7218 4.1065 6.2396 39 1 2.0361 2.7036 4.9640 40 1 2.7298 1.1748 5.7272 41 1 4.3939 2.8701 -2.1440 42 1 5.5424 5.1003 -0.2612 43 1 5.8160 4.9700 -2.0806 44 1 3.3153 5.1428 -2.4686 45 1 3.0416 5.2728 -0.6496 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431120208.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:05:15 Heat of formation + Delta-G solvation = 27.207016 kcal Electronic energy + Delta-G solvation = -23401.117686 eV Core-core repulsion = 20227.774834 eV Total energy + Delta-G solvation = -3173.342852 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.83355 -37.09040 -35.96271 -35.64280 -33.38523 -32.36173 -31.90215 -28.45600 -25.96145 -25.23628 -23.45295 -22.11062 -21.92659 -21.21626 -21.04190 -19.22350 -18.85486 -17.13290 -16.43316 -15.79703 -15.11619 -14.93809 -14.66862 -14.55949 -13.94636 -13.68917 -13.48557 -13.03022 -12.95350 -12.79559 -12.47973 -12.16828 -11.81794 -11.53513 -11.42373 -11.26571 -11.08645 -10.99343 -10.87642 -10.68177 -10.56565 -10.50776 -10.46750 -10.20007 -9.92282 -9.62256 -9.00649 -8.82605 -8.78993 -8.27226 -7.97429 -7.53220 -5.94241 -4.16456 3.20724 3.27945 3.31625 3.33474 3.96378 4.30805 4.38370 4.70031 4.95045 4.99836 5.06213 5.15809 5.25678 5.31209 5.42884 5.49990 5.51281 5.65875 5.73676 5.79316 5.83062 5.94846 5.98900 6.05357 6.08326 6.16403 6.29251 6.33541 6.42171 6.47612 6.58451 6.63345 6.76426 6.86214 6.90715 7.06540 7.25835 7.31542 7.60256 7.71423 7.87030 8.05433 8.34820 8.79974 9.00924 9.46728 9.59101 10.92383 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.012158 B = 0.006618 C = 0.005785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2302.478981 B = 4229.681746 C = 4839.212981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C -0.136 4.136 4 C 0.116 3.884 5 N -0.612 5.612 6 C 0.706 3.294 7 O -0.596 6.596 8 N -0.697 5.697 9 C 0.183 3.817 10 C 0.037 3.963 11 C -0.498 4.498 12 H 0.060 0.940 13 C 0.075 3.925 14 N -0.860 5.860 15 Si 0.891 3.109 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.283 1.283 19 C -0.200 4.200 20 C -0.213 4.213 21 C 0.094 3.906 22 C -0.193 4.193 23 C -0.191 4.191 24 H 0.051 0.949 25 H 0.054 0.946 26 H 0.050 0.950 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.392 0.608 34 H 0.011 0.989 35 H 0.115 0.885 36 H 0.261 0.739 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.074 0.926 41 H 0.118 0.882 42 H 0.143 0.857 43 H 0.079 0.921 44 H 0.084 0.916 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.871 -3.381 -9.457 12.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.161 4.161 3 C -0.175 4.175 4 C -0.008 4.008 5 N -0.347 5.347 6 C 0.408 3.592 7 O -0.476 6.476 8 N -0.348 5.348 9 C 0.059 3.941 10 C 0.036 3.964 11 C -0.535 4.535 12 H 0.078 0.922 13 C -0.130 4.130 14 N -0.495 5.495 15 Si 0.719 3.281 16 H -0.198 1.198 17 H -0.211 1.211 18 H -0.209 1.209 19 C -0.238 4.238 20 C -0.250 4.250 21 C -0.012 4.012 22 C -0.230 4.230 23 C -0.230 4.230 24 H 0.070 0.930 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.097 0.903 33 H 0.227 0.773 34 H 0.030 0.970 35 H 0.133 0.867 36 H 0.072 0.928 37 H 0.097 0.903 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.093 0.907 41 H 0.136 0.864 42 H 0.161 0.839 43 H 0.097 0.903 44 H 0.103 0.897 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.464 -2.411 -9.425 12.262 hybrid contribution 0.548 -1.265 -0.006 1.379 sum -6.916 -3.676 -9.431 12.259 Atomic orbital electron populations 1.21745 0.95973 1.01295 1.01752 1.21471 0.95846 0.96636 1.02170 1.22056 0.95887 0.96810 1.02758 1.21471 0.93608 0.82826 1.02860 1.46460 1.70568 1.13738 1.03929 1.15895 0.78327 0.84853 0.80157 1.90650 1.56157 1.15057 1.85758 1.44953 1.74238 1.11433 1.04219 1.20906 1.01211 0.92402 0.79580 1.19262 0.91507 0.96210 0.89393 1.20508 0.96611 0.94787 1.41629 0.92203 1.25004 0.97930 0.95365 0.94710 1.69892 1.23299 1.21521 1.34824 0.86555 0.81827 0.82050 0.77701 1.19809 1.21063 1.20883 1.22940 1.05056 0.96910 0.98934 1.22940 0.94165 0.99342 1.08547 1.21278 1.05571 0.87937 0.86417 1.23882 0.93319 1.00285 1.05556 1.23214 0.97054 1.01201 1.01560 0.92961 0.92656 0.93044 0.92160 0.91505 0.91510 0.91850 0.90976 0.90295 0.77252 0.97047 0.86729 0.92784 0.90270 0.91490 0.91450 0.90728 0.86396 0.83906 0.90279 0.89744 0.88665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.91 37.16 0.37 -1.08 16 2 C -0.12 -1.28 5.93 -26.73 -0.16 -1.44 16 3 C -0.14 -1.68 5.54 -26.73 -0.15 -1.83 16 4 C 0.12 1.63 5.39 -4.04 -0.02 1.61 16 5 N -0.61 -10.55 2.84 -171.80 -0.49 -11.04 16 6 C 0.71 15.13 8.07 -86.91 -0.70 14.43 16 7 O -0.60 -14.42 12.06 5.29 0.06 -14.36 16 8 N -0.70 -15.17 4.84 -65.23 -0.32 -15.49 16 9 C 0.18 4.37 4.61 -4.04 -0.02 4.35 16 10 C 0.04 0.87 2.05 -155.66 -0.32 0.55 16 11 C -0.50 -12.63 8.46 -34.44 -0.29 -12.92 16 12 H 0.06 1.52 7.82 -52.49 -0.41 1.11 16 13 C 0.07 1.92 5.30 -17.82 -0.09 1.82 16 14 N -0.86 -23.06 10.02 55.43 0.56 -22.50 16 15 Si 0.89 20.21 29.54 -169.99 -5.02 15.19 16 16 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 C -0.20 -4.38 9.96 -26.70 -0.27 -4.64 16 20 C -0.21 -4.42 9.92 -26.70 -0.26 -4.68 16 21 C 0.09 1.44 6.62 -67.93 -0.45 0.99 16 22 C -0.19 -3.21 9.63 -26.73 -0.26 -3.47 16 23 C -0.19 -2.91 9.87 -26.73 -0.26 -3.18 16 24 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.07 0.85 8.03 -51.93 -0.42 0.44 16 32 H 0.08 1.20 6.10 -51.93 -0.32 0.88 16 33 H 0.39 8.16 5.76 -40.82 -0.24 7.93 16 34 H 0.01 0.27 8.09 -51.93 -0.42 -0.15 16 35 H 0.12 3.15 5.88 -51.93 -0.31 2.85 16 36 H 0.26 6.94 8.32 -40.82 -0.34 6.60 16 37 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 38 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 39 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 41 H 0.12 1.46 8.09 -51.92 -0.42 1.04 16 42 H 0.14 2.99 5.22 -52.10 -0.27 2.72 16 43 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.09 1.69 7.58 -51.93 -0.39 1.30 16 LS Contribution 358.63 15.07 5.40 5.40 Total: -1.00 -27.89 358.63 -10.51 -38.40 By element: Atomic # 1 Polarization: 21.70 SS G_CDS: -7.82 Total: 13.88 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: -2.89 Total: -9.48 kcal Atomic # 7 Polarization: -48.78 SS G_CDS: -0.25 Total: -49.03 kcal Atomic # 8 Polarization: -14.42 SS G_CDS: 0.06 Total: -14.36 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -27.89 -10.51 -38.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431120208.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.607 kcal (2) G-P(sol) polarization free energy of solvation -27.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds