Wall clock time and date at job start Tue Mar 31 2020 02:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46999 * 2 1 4 4 C 1.52995 * 109.46865 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47086 * 179.97438 * 4 3 2 6 6 C 1.34784 * 119.99616 * 90.00161 * 5 4 3 7 7 O 1.21583 * 119.99558 * 185.96743 * 6 5 4 8 8 N 1.34775 * 120.00160 * 5.97023 * 6 5 4 9 9 C 1.46492 * 119.99837 * 185.01475 * 8 6 5 10 10 C 1.53004 * 109.47300 * 184.99369 * 9 8 6 11 11 C 1.50710 * 115.54713 * 54.49160 * 10 9 8 12 12 H 1.08001 * 119.99774 * 214.64231 * 11 10 9 13 13 C 1.37877 * 120.00010 * 34.36307 * 11 10 9 14 14 N 1.31519 * 119.99885 * 355.65984 * 13 11 10 15 15 Si 1.86793 * 119.99926 * 175.65739 * 13 11 10 16 16 H 1.48503 * 109.47459 * 0.02562 * 15 13 11 17 17 H 1.48496 * 109.47144 * 120.00243 * 15 13 11 18 18 H 1.48501 * 109.47207 * 240.00398 * 15 13 11 19 19 C 1.52993 * 117.50236 * 200.16319 * 10 9 8 20 20 C 1.52994 * 117.50174 * 268.82587 * 10 9 8 21 21 C 1.46493 * 120.00248 * 270.00422 * 5 4 3 22 22 C 1.53001 * 117.50029 * 196.54239 * 21 5 4 23 23 C 1.53001 * 117.50292 * 127.91639 * 21 5 4 24 24 H 1.08999 * 109.47149 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47085 * 300.00032 * 1 2 3 26 26 H 1.09001 * 109.47217 * 60.00276 * 1 2 3 27 27 H 1.09000 * 109.47213 * 240.00369 * 2 1 3 28 28 H 1.08997 * 109.46970 * 120.00171 * 2 1 3 29 29 H 1.09000 * 109.46836 * 60.00138 * 3 2 1 30 30 H 1.08997 * 109.47399 * 299.99908 * 3 2 1 31 31 H 1.09005 * 109.47305 * 60.00209 * 4 3 2 32 32 H 1.08997 * 109.47303 * 300.00293 * 4 3 2 33 33 H 0.97009 * 119.99820 * 5.01057 * 8 6 5 34 34 H 1.09001 * 109.47653 * 64.99340 * 9 8 6 35 35 H 1.09001 * 109.47429 * 304.99140 * 9 8 6 36 36 H 0.96997 * 119.99683 * 185.00134 * 14 13 11 37 37 H 1.09006 * 117.49558 * 215.00634 * 19 10 9 38 38 H 1.09002 * 117.49863 * 0.02562 * 19 10 9 39 39 H 1.09007 * 117.49796 * 359.97195 * 20 10 9 40 40 H 1.09000 * 117.50489 * 144.96814 * 20 10 9 41 41 H 1.09008 * 115.54957 * 342.24717 * 21 5 4 42 42 H 1.09000 * 117.49865 * 359.97438 * 22 21 5 43 43 H 1.09000 * 117.49974 * 145.02382 * 22 21 5 44 44 H 1.08992 * 117.50164 * 214.98250 * 23 21 5 45 45 H 1.09003 * 117.49593 * 359.97438 * 23 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4425 0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.2825 3.4598 1.1671 7 8 4.5829 4.6379 1.1693 8 7 4.1736 2.7898 2.3314 9 6 4.3088 3.5044 3.6030 10 6 4.2690 2.5019 4.7582 11 6 5.2677 1.3761 4.6765 12 1 5.0063 0.3947 5.0438 13 6 6.5129 1.5977 4.1276 14 7 6.7995 2.7670 3.5981 15 14 7.7928 0.2372 4.1361 16 1 7.2256 -0.9721 4.7850 17 1 8.1802 -0.0866 2.7396 18 1 8.9900 0.6886 4.8899 19 6 3.9221 3.0390 6.1481 20 6 2.9051 2.1926 5.3785 21 6 4.3029 3.5137 -1.2689 22 6 5.1606 4.7801 -1.2306 23 6 3.6521 4.8844 -1.4648 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6767 1.9564 -0.8900 31 1 3.9337 0.9286 -0.8892 32 1 3.9329 0.9288 0.8908 33 1 4.0057 1.8343 2.3273 34 1 3.4888 4.2145 3.7098 35 1 5.2579 4.0402 3.6196 36 1 7.6482 2.9005 3.1478 37 1 4.4163 2.5781 7.0035 38 1 3.7218 4.1065 6.2396 39 1 2.0361 2.7036 4.9640 40 1 2.7298 1.1748 5.7272 41 1 4.3939 2.8701 -2.1440 42 1 5.5424 5.1003 -0.2612 43 1 5.8160 4.9700 -2.0806 44 1 3.3153 5.1428 -2.4686 45 1 3.0416 5.2728 -0.6496 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431120208.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:05:14 Heat of formation + Delta-G solvation = 13.620293 kcal Electronic energy + Delta-G solvation = -23401.706850 eV Core-core repulsion = 20227.774834 eV Total energy + Delta-G solvation = -3173.932016 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.35832 -38.80876 -37.39831 -36.87036 -34.78151 -34.18758 -33.50464 -29.53418 -27.81216 -27.10680 -24.52766 -23.50615 -23.19418 -22.93888 -21.95955 -21.07514 -20.48715 -18.69352 -18.00885 -17.30543 -16.75711 -16.28598 -16.15878 -16.02492 -15.62733 -14.99569 -14.84653 -14.59465 -14.27974 -13.99135 -13.85987 -13.58258 -13.43710 -13.19469 -12.94150 -12.64987 -12.57220 -12.30006 -12.26359 -12.09077 -11.99849 -11.86505 -11.72216 -11.46153 -11.41579 -11.13823 -10.88826 -10.67973 -10.48961 -10.14933 -9.63084 -9.06070 -7.89462 -6.17746 1.39382 1.45299 1.53941 1.87302 2.36151 2.41898 2.98264 3.11678 3.33112 3.67311 3.95456 4.03654 4.07773 4.15243 4.25923 4.29203 4.29872 4.40785 4.55121 4.63514 4.71551 4.78055 4.81833 4.83385 4.88043 4.91471 4.95883 5.01831 5.12479 5.13750 5.19458 5.30109 5.32615 5.41257 5.51712 5.52868 5.54222 5.62471 5.95770 6.01018 6.08262 6.19217 6.40255 6.83765 7.35420 7.47250 7.93038 8.93665 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.012158 B = 0.006618 C = 0.005785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2302.478981 B = 4229.681746 C = 4839.212981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.119 4.119 3 C -0.125 4.125 4 C 0.112 3.888 5 N -0.609 5.609 6 C 0.696 3.304 7 O -0.631 6.631 8 N -0.695 5.695 9 C 0.197 3.803 10 C 0.008 3.992 11 C -0.503 4.503 12 H 0.058 0.942 13 C 0.035 3.965 14 N -0.884 5.884 15 Si 0.948 3.052 16 H -0.265 1.265 17 H -0.284 1.284 18 H -0.289 1.289 19 C -0.201 4.201 20 C -0.185 4.185 21 C 0.093 3.907 22 C -0.211 4.211 23 C -0.179 4.179 24 H 0.063 0.937 25 H 0.043 0.957 26 H 0.058 0.942 27 H 0.079 0.921 28 H 0.059 0.941 29 H 0.040 0.960 30 H 0.071 0.929 31 H 0.105 0.895 32 H 0.063 0.937 33 H 0.396 0.604 34 H 0.005 0.995 35 H 0.076 0.924 36 H 0.253 0.747 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.163 0.837 42 H 0.095 0.905 43 H 0.107 0.893 44 H 0.122 0.878 45 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.914 -5.360 -11.173 15.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.157 4.157 3 C -0.164 4.164 4 C -0.010 4.010 5 N -0.343 5.343 6 C 0.398 3.602 7 O -0.514 6.514 8 N -0.347 5.347 9 C 0.072 3.928 10 C 0.007 3.993 11 C -0.540 4.540 12 H 0.076 0.924 13 C -0.167 4.167 14 N -0.520 5.520 15 Si 0.774 3.226 16 H -0.189 1.189 17 H -0.210 1.210 18 H -0.216 1.216 19 C -0.239 4.239 20 C -0.222 4.222 21 C -0.011 4.011 22 C -0.248 4.248 23 C -0.218 4.218 24 H 0.082 0.918 25 H 0.063 0.937 26 H 0.077 0.923 27 H 0.098 0.902 28 H 0.078 0.922 29 H 0.059 0.941 30 H 0.090 0.910 31 H 0.123 0.877 32 H 0.082 0.918 33 H 0.232 0.768 34 H 0.023 0.977 35 H 0.094 0.906 36 H 0.063 0.937 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.100 0.900 40 H 0.103 0.897 41 H 0.180 0.820 42 H 0.113 0.887 43 H 0.125 0.875 44 H 0.140 0.860 45 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.533 -4.430 -11.157 14.728 hybrid contribution 0.848 -0.612 0.542 1.177 sum -7.685 -5.042 -10.615 14.041 Atomic orbital electron populations 1.21739 0.95332 1.02050 1.01588 1.21450 0.96364 0.95096 1.02784 1.21938 0.94482 0.98108 1.01868 1.21713 0.94705 0.80947 1.03673 1.46567 1.69637 1.14876 1.03263 1.16176 0.78192 0.84624 0.81183 1.90662 1.57495 1.16722 1.86522 1.44807 1.74542 1.11451 1.03908 1.20517 0.98797 0.92439 0.81026 1.19302 0.93475 0.96458 0.90059 1.20684 0.97064 0.95047 1.41201 0.92383 1.25602 0.99468 0.96992 0.94645 1.70105 1.23098 1.23060 1.35773 0.85665 0.79401 0.80039 0.77449 1.18930 1.20975 1.21590 1.22966 1.05396 0.97687 0.97879 1.22918 0.93212 0.99761 1.06332 1.21769 1.04436 0.88374 0.86538 1.23699 0.94727 1.02189 1.04221 1.23167 0.95375 1.00914 1.02297 0.91757 0.93747 0.92334 0.90238 0.92186 0.94102 0.91015 0.87708 0.91843 0.76781 0.97656 0.90573 0.93678 0.90323 0.90758 0.90008 0.89681 0.81983 0.88671 0.87474 0.85974 0.91947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 9.91 71.98 0.71 -1.83 16 2 C -0.12 -2.18 5.93 30.60 0.18 -2.00 16 3 C -0.13 -2.87 5.54 30.60 0.17 -2.70 16 4 C 0.11 2.93 5.39 86.38 0.47 3.40 16 5 N -0.61 -20.59 2.84 -815.71 -2.32 -22.91 16 6 C 0.70 30.74 8.07 179.05 1.44 32.18 16 7 O -0.63 -32.19 12.06 -3.98 -0.05 -32.24 16 8 N -0.70 -31.12 4.84 -478.55 -2.32 -33.44 16 9 C 0.20 9.76 4.61 86.38 0.40 10.16 16 10 C 0.01 0.37 2.05 -52.93 -0.11 0.26 16 11 C -0.50 -25.48 8.46 25.60 0.22 -25.27 16 12 H 0.06 2.91 7.82 -2.91 -0.02 2.89 16 13 C 0.03 1.80 5.30 84.65 0.45 2.25 16 14 N -0.88 -48.86 10.02 21.45 0.21 -48.64 16 15 Si 0.95 41.65 29.54 68.60 2.03 43.68 16 16 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 17 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 18 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 19 C -0.20 -8.70 9.96 30.61 0.30 -8.40 16 20 C -0.19 -7.45 9.92 30.62 0.30 -7.14 16 21 C 0.09 2.68 6.62 44.99 0.30 2.98 16 22 C -0.21 -6.93 9.63 30.60 0.29 -6.64 16 23 C -0.18 -5.20 9.87 30.60 0.30 -4.90 16 24 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.10 2.08 8.03 -2.38 -0.02 2.07 16 32 H 0.06 1.87 6.10 -2.39 -0.01 1.86 16 33 H 0.40 16.76 5.76 -92.70 -0.53 16.23 16 34 H 0.01 0.26 8.09 -2.39 -0.02 0.24 16 35 H 0.08 4.41 5.88 -2.39 -0.01 4.40 16 36 H 0.25 13.93 8.32 -92.71 -0.77 13.16 16 37 H 0.08 3.39 8.14 -2.38 -0.02 3.37 16 38 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 39 H 0.08 3.05 8.14 -2.38 -0.02 3.03 16 40 H 0.08 3.25 8.14 -2.39 -0.02 3.23 16 41 H 0.16 3.24 8.09 -2.38 -0.02 3.23 16 42 H 0.10 4.19 5.22 -5.07 -0.03 4.16 16 43 H 0.11 2.85 8.14 -2.39 -0.02 2.83 16 44 H 0.12 2.62 8.14 -2.39 -0.02 2.61 16 45 H 0.06 2.24 7.58 -2.39 -0.02 2.23 16 Total: -1.00 -62.77 358.63 3.40 -59.37 By element: Atomic # 1 Polarization: 41.41 SS G_CDS: 0.41 Total: 41.82 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: 5.43 Total: -7.64 kcal Atomic # 7 Polarization: -100.57 SS G_CDS: -4.42 Total: -104.99 kcal Atomic # 8 Polarization: -32.19 SS G_CDS: -0.05 Total: -32.24 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.68 kcal Total: -62.77 3.40 -59.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431120208.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.993 kcal (2) G-P(sol) polarization free energy of solvation -62.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds