Wall clock time and date at job start Tue Mar 31 2020 02:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46894 * 2 1 4 4 H 1.08998 * 109.87405 * 54.44980 * 3 2 1 5 5 C 1.54318 * 110.00765 * 175.54695 * 3 2 1 6 6 C 1.55160 * 102.94256 * 141.68648 * 5 3 2 7 7 C 1.55126 * 101.48296 * 324.32892 * 6 5 3 8 8 H 1.08998 * 110.34331 * 156.05771 * 7 6 5 9 9 C 1.52997 * 110.50178 * 278.45450 * 7 6 5 10 10 N 1.47019 * 109.88375 * 293.43441 * 3 2 1 11 11 C 1.34769 * 125.65193 * 61.44972 * 10 3 2 12 12 O 1.21589 * 119.99676 * 6.75575 * 11 10 3 13 13 N 1.34774 * 120.00380 * 186.75143 * 11 10 3 14 14 C 1.46498 * 120.00148 * 175.00109 * 13 11 10 15 15 C 1.52999 * 109.47124 * 185.08318 * 14 13 11 16 16 C 1.50704 * 115.56171 * 268.38973 * 15 14 13 17 17 H 1.08005 * 119.99717 * 141.70559 * 16 15 14 18 18 C 1.37871 * 120.00311 * 321.69858 * 16 15 14 19 19 N 1.31520 * 119.99948 * 348.82110 * 18 16 15 20 20 Si 1.86795 * 120.00051 * 168.81411 * 18 16 15 21 21 H 1.48504 * 109.47293 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47159 * 120.00345 * 20 18 16 23 23 H 1.48498 * 109.47464 * 240.00058 * 20 18 16 24 24 C 1.53000 * 117.50047 * 54.08043 * 15 14 13 25 25 C 1.52995 * 59.99990 * 107.48702 * 24 15 14 26 26 H 1.09004 * 109.46708 * 78.90680 * 1 2 3 27 27 H 1.08998 * 109.46977 * 198.90199 * 1 2 3 28 28 H 1.08992 * 109.47144 * 318.90755 * 1 2 3 29 29 H 1.08997 * 109.47164 * 240.00216 * 2 1 3 30 30 H 1.09000 * 109.46676 * 120.00255 * 2 1 3 31 31 H 1.09002 * 110.72588 * 260.04892 * 5 3 2 32 32 H 1.09006 * 110.72304 * 23.32162 * 5 3 2 33 33 H 1.08999 * 111.00472 * 82.57153 * 6 5 3 34 34 H 1.09003 * 111.00005 * 206.38603 * 6 5 3 35 35 H 1.09004 * 109.47449 * 175.35034 * 9 7 6 36 36 H 1.09000 * 109.47031 * 295.35638 * 9 7 6 37 37 H 1.09000 * 109.47063 * 55.34975 * 9 7 6 38 38 H 0.96998 * 120.00100 * 355.00308 * 13 11 10 39 39 H 1.09002 * 109.46919 * 65.08807 * 14 13 11 40 40 H 1.08997 * 109.47273 * 305.08527 * 14 13 11 41 41 H 0.97001 * 119.99988 * 185.00603 * 19 18 16 42 42 H 1.09007 * 117.49564 * 0.02562 * 24 15 14 43 43 H 1.08996 * 117.49916 * 214.97945 * 24 15 14 44 44 H 1.09009 * 117.49946 * 107.49299 * 25 24 15 45 45 H 1.09005 * 117.50380 * 252.51265 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6016 1.9905 0.8340 5 6 3.5790 1.4585 0.1126 6 6 3.9842 2.6239 -0.8283 7 6 2.9308 2.4885 -1.9589 8 1 2.7971 3.4427 -2.4685 9 6 3.3500 1.4056 -2.9551 10 7 1.6882 2.0972 -1.2685 11 6 0.4374 2.3007 -1.7270 12 8 -0.5183 2.0424 -1.0212 13 7 0.2458 2.7907 -2.9679 14 6 -1.1111 2.9092 -3.5072 15 6 -1.0421 3.3683 -4.9651 16 6 -1.0991 4.8587 -5.1808 17 1 -0.4917 5.3170 -5.9473 18 6 -1.9267 5.6372 -4.3999 19 7 -2.8234 5.0694 -3.6232 20 14 -1.7744 7.4984 -4.4448 21 1 -0.6980 7.8843 -5.3924 22 1 -3.0614 8.0898 -4.8909 23 1 -1.4430 8.0009 -3.0873 24 6 -0.1764 2.5483 -5.9238 25 6 -1.7017 2.4763 -6.0186 26 1 -0.3633 0.1977 -1.0085 27 1 -0.3633 -0.9722 0.3329 28 1 -0.3633 0.7744 0.6754 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.8887 1.6646 1.1372 32 1 4.0011 0.5162 -0.2368 33 1 3.8963 3.5844 -0.3206 34 1 4.9927 2.4801 -1.2162 35 1 2.5612 1.2670 -3.6945 36 1 4.2689 1.7094 -3.4566 37 1 3.5188 0.4689 -2.4238 38 1 1.0064 3.0648 -3.5038 39 1 -1.6719 3.6385 -2.9228 40 1 -1.6089 1.9409 -3.4544 41 1 -3.4537 5.6169 -3.1293 42 1 0.3436 1.6815 -5.5160 43 1 0.3518 3.0869 -6.7106 44 1 -2.1770 2.9674 -6.8679 45 1 -2.1849 1.5623 -5.6731 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431185784.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:45:53 Heat of formation + Delta-G solvation = -1.057079 kcal Electronic energy + Delta-G solvation = -23658.169701 eV Core-core repulsion = 20483.601226 eV Total energy + Delta-G solvation = -3174.568475 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.26024 -37.74045 -36.53688 -34.04489 -32.43475 -32.23877 -31.10986 -29.82230 -26.23321 -25.92708 -25.06618 -22.66821 -21.70617 -21.17275 -20.62150 -19.19840 -18.73451 -17.80474 -16.11839 -15.98796 -15.28037 -14.83503 -14.52021 -14.13568 -13.87255 -13.61174 -13.38277 -13.09888 -12.94115 -12.65933 -12.60389 -12.36771 -12.10445 -11.80779 -11.61862 -11.45358 -11.16125 -10.99532 -10.81530 -10.79495 -10.65602 -10.49719 -10.43711 -10.31699 -10.25146 -9.48625 -9.18233 -9.08308 -8.82052 -8.21579 -8.16978 -7.69364 -6.05802 -4.14154 3.17701 3.24168 3.33779 3.36023 3.91649 4.33067 4.44449 4.51315 4.80465 4.86750 5.01992 5.08438 5.26209 5.33448 5.43488 5.49962 5.57890 5.59784 5.63075 5.72807 5.90722 5.93672 5.97503 6.02596 6.09534 6.21500 6.28343 6.34532 6.36279 6.53552 6.60359 6.61381 6.71382 6.78804 6.96267 7.04296 7.10344 7.29273 7.60809 7.63559 7.78212 8.08334 8.38813 8.73884 8.86381 9.39823 9.46240 10.92978 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.018560 B = 0.005372 C = 0.005263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.227269 B = 5210.837464 C = 5318.524216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.128 4.128 3 C 0.157 3.843 4 H 0.070 0.930 5 C -0.128 4.128 6 C -0.126 4.126 7 C 0.125 3.875 8 H 0.081 0.919 9 C -0.162 4.162 10 N -0.633 5.633 11 C 0.711 3.289 12 O -0.582 6.582 13 N -0.726 5.726 14 C 0.159 3.841 15 C 0.041 3.959 16 C -0.491 4.491 17 H 0.062 0.938 18 C 0.070 3.930 19 N -0.872 5.872 20 Si 0.894 3.106 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.282 1.282 24 C -0.209 4.209 25 C -0.194 4.194 26 H 0.075 0.925 27 H 0.026 0.974 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.057 0.943 38 H 0.388 0.612 39 H 0.124 0.876 40 H 0.031 0.969 41 H 0.265 0.735 42 H 0.067 0.933 43 H 0.075 0.925 44 H 0.079 0.921 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.749 -6.967 5.239 16.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.166 4.166 3 C 0.053 3.947 4 H 0.088 0.912 5 C -0.166 4.166 6 C -0.164 4.164 7 C 0.020 3.980 8 H 0.099 0.901 9 C -0.220 4.220 10 N -0.373 5.373 11 C 0.413 3.587 12 O -0.461 6.461 13 N -0.379 5.379 14 C 0.037 3.963 15 C 0.040 3.960 16 C -0.529 4.529 17 H 0.080 0.920 18 C -0.134 4.134 19 N -0.509 5.509 20 Si 0.721 3.279 21 H -0.197 1.197 22 H -0.209 1.209 23 H -0.208 1.208 24 C -0.247 4.247 25 C -0.232 4.232 26 H 0.094 0.906 27 H 0.045 0.955 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.221 0.779 39 H 0.141 0.859 40 H 0.049 0.951 41 H 0.075 0.925 42 H 0.086 0.914 43 H 0.094 0.906 44 H 0.098 0.902 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 12.772 -7.081 5.891 15.747 hybrid contribution 0.384 0.983 -0.464 1.152 sum 13.155 -6.098 5.428 15.483 Atomic orbital electron populations 1.22119 0.93816 0.99155 1.04859 1.21950 0.98025 0.95654 1.01001 1.21400 0.93683 0.93056 0.86606 0.91204 1.22704 0.94506 0.99118 1.00238 1.22797 0.98381 0.99052 0.96194 1.21812 0.84717 0.97810 0.93613 0.90132 1.22184 1.01581 0.99095 0.99148 1.47719 1.03746 1.63966 1.21885 1.15526 0.81565 0.79156 0.82441 1.90912 1.39677 1.58256 1.57232 1.45470 1.11096 1.67123 1.14223 1.21313 0.79838 1.00104 0.95026 1.19220 0.97013 0.92534 0.87236 1.20574 1.25155 0.89242 1.17893 0.91994 1.25001 0.94853 0.98847 0.94661 1.69741 1.17091 1.35214 1.28806 0.86506 0.78093 0.85292 0.77963 1.19694 1.20931 1.20800 1.22835 0.93539 1.02991 1.05331 1.22965 0.93361 1.02061 1.04823 0.90597 0.95532 0.91773 0.92446 0.92151 0.90433 0.90677 0.90634 0.90164 0.92006 0.91828 0.92364 0.77878 0.85910 0.95103 0.92481 0.91445 0.90617 0.90231 0.91583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 8.08 37.16 0.30 -2.06 16 2 C -0.13 -1.70 5.46 -26.73 -0.15 -1.85 16 3 C 0.16 2.10 3.04 -66.96 -0.20 1.90 16 4 H 0.07 1.03 8.04 -51.93 -0.42 0.61 16 5 C -0.13 -1.21 6.10 -24.90 -0.15 -1.37 16 6 C -0.13 -1.20 6.58 -24.46 -0.16 -1.37 16 7 C 0.12 1.55 2.93 -66.30 -0.19 1.35 16 8 H 0.08 1.06 7.48 -51.93 -0.39 0.67 16 9 C -0.16 -1.78 9.52 37.16 0.35 -1.43 16 10 N -0.63 -9.93 2.71 -161.11 -0.44 -10.37 16 11 C 0.71 14.42 7.60 -86.93 -0.66 13.76 16 12 O -0.58 -13.61 11.80 5.29 0.06 -13.55 16 13 N -0.73 -15.11 5.36 -65.23 -0.35 -15.46 16 14 C 0.16 3.88 5.43 -4.04 -0.02 3.86 16 15 C 0.04 0.98 1.87 -155.66 -0.29 0.69 16 16 C -0.49 -12.93 9.02 -34.44 -0.31 -13.24 16 17 H 0.06 1.62 7.84 -52.48 -0.41 1.21 16 18 C 0.07 1.86 5.17 -17.82 -0.09 1.77 16 19 N -0.87 -24.36 10.78 55.43 0.60 -23.76 16 20 Si 0.89 20.72 29.56 -169.99 -5.02 15.69 16 21 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 C -0.21 -4.34 9.44 -26.73 -0.25 -4.59 16 25 C -0.19 -4.35 9.88 -26.74 -0.26 -4.62 16 26 H 0.08 1.51 5.60 -51.93 -0.29 1.22 16 27 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 1.17 6.95 -51.93 -0.36 0.81 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.64 7.41 -51.93 -0.38 0.26 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.08 0.61 8.05 -51.93 -0.42 0.19 16 35 H 0.06 0.79 8.08 -51.93 -0.42 0.37 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.62 7.36 -51.93 -0.38 0.23 16 38 H 0.39 7.40 6.72 -40.82 -0.27 7.12 16 39 H 0.12 3.45 5.14 -51.93 -0.27 3.19 16 40 H 0.03 0.77 7.87 -51.93 -0.41 0.36 16 41 H 0.26 7.10 8.32 -40.82 -0.34 6.76 16 42 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 43 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 44 H 0.08 1.80 8.14 -51.92 -0.42 1.37 16 45 H 0.07 1.43 8.03 -51.93 -0.42 1.01 16 LS Contribution 347.81 15.07 5.24 5.24 Total: -1.00 -29.17 347.81 -9.79 -38.96 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: -7.78 Total: 10.43 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: -2.10 Total: -7.18 kcal Atomic # 7 Polarization: -49.40 SS G_CDS: -0.19 Total: -49.59 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: 0.06 Total: -13.55 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -29.17 -9.79 -38.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431185784.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.902 kcal (2) G-P(sol) polarization free energy of solvation -29.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds