Wall clock time and date at job start Tue Mar 31 2020 02:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46894 * 2 1 4 4 H 1.08998 * 109.87405 * 54.44980 * 3 2 1 5 5 C 1.54318 * 110.00765 * 175.54695 * 3 2 1 6 6 C 1.55160 * 102.94256 * 141.68648 * 5 3 2 7 7 C 1.55126 * 101.48296 * 324.32892 * 6 5 3 8 8 H 1.08998 * 110.34331 * 156.05771 * 7 6 5 9 9 C 1.52997 * 110.50178 * 278.45450 * 7 6 5 10 10 N 1.47019 * 109.88375 * 293.43441 * 3 2 1 11 11 C 1.34769 * 125.65193 * 61.44972 * 10 3 2 12 12 O 1.21589 * 119.99676 * 6.75575 * 11 10 3 13 13 N 1.34774 * 120.00380 * 186.75143 * 11 10 3 14 14 C 1.46498 * 120.00148 * 175.00109 * 13 11 10 15 15 C 1.52999 * 109.47124 * 185.08318 * 14 13 11 16 16 C 1.50704 * 115.56171 * 268.38973 * 15 14 13 17 17 H 1.08005 * 119.99717 * 141.70559 * 16 15 14 18 18 C 1.37871 * 120.00311 * 321.69858 * 16 15 14 19 19 N 1.31520 * 119.99948 * 348.82110 * 18 16 15 20 20 Si 1.86795 * 120.00051 * 168.81411 * 18 16 15 21 21 H 1.48504 * 109.47293 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47159 * 120.00345 * 20 18 16 23 23 H 1.48498 * 109.47464 * 240.00058 * 20 18 16 24 24 C 1.53000 * 117.50047 * 54.08043 * 15 14 13 25 25 C 1.52995 * 59.99990 * 107.48702 * 24 15 14 26 26 H 1.09004 * 109.46708 * 78.90680 * 1 2 3 27 27 H 1.08998 * 109.46977 * 198.90199 * 1 2 3 28 28 H 1.08992 * 109.47144 * 318.90755 * 1 2 3 29 29 H 1.08997 * 109.47164 * 240.00216 * 2 1 3 30 30 H 1.09000 * 109.46676 * 120.00255 * 2 1 3 31 31 H 1.09002 * 110.72588 * 260.04892 * 5 3 2 32 32 H 1.09006 * 110.72304 * 23.32162 * 5 3 2 33 33 H 1.08999 * 111.00472 * 82.57153 * 6 5 3 34 34 H 1.09003 * 111.00005 * 206.38603 * 6 5 3 35 35 H 1.09004 * 109.47449 * 175.35034 * 9 7 6 36 36 H 1.09000 * 109.47031 * 295.35638 * 9 7 6 37 37 H 1.09000 * 109.47063 * 55.34975 * 9 7 6 38 38 H 0.96998 * 120.00100 * 355.00308 * 13 11 10 39 39 H 1.09002 * 109.46919 * 65.08807 * 14 13 11 40 40 H 1.08997 * 109.47273 * 305.08527 * 14 13 11 41 41 H 0.97001 * 119.99988 * 185.00603 * 19 18 16 42 42 H 1.09007 * 117.49564 * 0.02562 * 24 15 14 43 43 H 1.08996 * 117.49916 * 214.97945 * 24 15 14 44 44 H 1.09009 * 117.49946 * 107.49299 * 25 24 15 45 45 H 1.09005 * 117.50380 * 252.51265 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6016 1.9905 0.8340 5 6 3.5790 1.4585 0.1126 6 6 3.9842 2.6239 -0.8283 7 6 2.9308 2.4885 -1.9589 8 1 2.7971 3.4427 -2.4685 9 6 3.3500 1.4056 -2.9551 10 7 1.6882 2.0972 -1.2685 11 6 0.4374 2.3007 -1.7270 12 8 -0.5183 2.0424 -1.0212 13 7 0.2458 2.7907 -2.9679 14 6 -1.1111 2.9092 -3.5072 15 6 -1.0421 3.3683 -4.9651 16 6 -1.0991 4.8587 -5.1808 17 1 -0.4917 5.3170 -5.9473 18 6 -1.9267 5.6372 -4.3999 19 7 -2.8234 5.0694 -3.6232 20 14 -1.7744 7.4984 -4.4448 21 1 -0.6980 7.8843 -5.3924 22 1 -3.0614 8.0898 -4.8909 23 1 -1.4430 8.0009 -3.0873 24 6 -0.1764 2.5483 -5.9238 25 6 -1.7017 2.4763 -6.0186 26 1 -0.3633 0.1977 -1.0085 27 1 -0.3633 -0.9722 0.3329 28 1 -0.3633 0.7744 0.6754 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.8887 1.6646 1.1372 32 1 4.0011 0.5162 -0.2368 33 1 3.8963 3.5844 -0.3206 34 1 4.9927 2.4801 -1.2162 35 1 2.5612 1.2670 -3.6945 36 1 4.2689 1.7094 -3.4566 37 1 3.5188 0.4689 -2.4238 38 1 1.0064 3.0648 -3.5038 39 1 -1.6719 3.6385 -2.9228 40 1 -1.6089 1.9409 -3.4544 41 1 -3.4537 5.6169 -3.1293 42 1 0.3436 1.6815 -5.5160 43 1 0.3518 3.0869 -6.7106 44 1 -2.1770 2.9674 -6.8679 45 1 -2.1849 1.5623 -5.6731 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431185784.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:45:52 Heat of formation + Delta-G solvation = -17.427998 kcal Electronic energy + Delta-G solvation = -23658.879597 eV Core-core repulsion = 20483.601226 eV Total energy + Delta-G solvation = -3175.278371 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.56682 -39.24340 -38.21472 -35.42305 -34.25703 -33.87331 -32.30574 -30.83657 -27.98412 -27.22643 -26.79725 -23.79779 -23.18167 -22.71523 -21.62421 -21.06056 -20.17128 -19.19795 -17.95593 -17.22687 -16.82471 -16.72455 -15.84463 -15.73725 -15.34663 -14.97275 -14.60066 -14.37700 -14.20833 -14.03131 -13.77352 -13.54705 -13.42487 -13.31390 -13.03500 -12.91968 -12.75018 -12.62424 -12.41149 -12.29437 -12.10058 -11.79468 -11.60070 -11.44516 -11.38379 -11.30439 -11.04685 -10.82975 -10.69248 -10.10914 -9.69194 -9.27772 -8.07768 -6.22133 1.38959 1.43000 1.53150 1.82015 2.34473 2.39235 2.96734 3.21552 3.60719 3.64051 3.77035 3.97803 4.16435 4.23602 4.25309 4.34867 4.47601 4.52815 4.55443 4.64285 4.68635 4.80321 4.87037 4.88611 4.92314 5.00084 5.04107 5.07384 5.10602 5.10937 5.16977 5.23938 5.27076 5.36798 5.48504 5.52425 5.57862 5.62397 5.67159 5.90328 6.04802 6.29601 6.38182 6.78963 7.25164 7.40536 7.82150 8.89667 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.018560 B = 0.005372 C = 0.005263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.227269 B = 5210.837464 C = 5318.524216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.120 4.120 3 C 0.145 3.855 4 H 0.050 0.950 5 C -0.114 4.114 6 C -0.117 4.117 7 C 0.113 3.887 8 H 0.069 0.931 9 C -0.154 4.154 10 N -0.630 5.630 11 C 0.703 3.297 12 O -0.622 6.622 13 N -0.723 5.723 14 C 0.177 3.823 15 C 0.010 3.990 16 C -0.500 4.500 17 H 0.063 0.937 18 C 0.022 3.978 19 N -0.904 5.904 20 Si 0.955 3.045 21 H -0.260 1.260 22 H -0.281 1.281 23 H -0.287 1.287 24 C -0.173 4.173 25 C -0.199 4.199 26 H 0.037 0.963 27 H 0.040 0.960 28 H 0.037 0.963 29 H 0.062 0.938 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.072 0.928 34 H 0.113 0.887 35 H 0.038 0.962 36 H 0.090 0.910 37 H 0.066 0.934 38 H 0.397 0.603 39 H 0.085 0.915 40 H 0.011 0.989 41 H 0.261 0.739 42 H 0.085 0.915 43 H 0.089 0.911 44 H 0.076 0.924 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.322 -7.440 5.094 19.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.158 4.158 3 C 0.042 3.958 4 H 0.068 0.932 5 C -0.151 4.151 6 C -0.154 4.154 7 C 0.010 3.990 8 H 0.087 0.913 9 C -0.213 4.213 10 N -0.368 5.368 11 C 0.405 3.595 12 O -0.504 6.504 13 N -0.377 5.377 14 C 0.053 3.947 15 C 0.009 3.991 16 C -0.538 4.538 17 H 0.081 0.919 18 C -0.178 4.178 19 N -0.542 5.542 20 Si 0.781 3.219 21 H -0.184 1.184 22 H -0.207 1.207 23 H -0.213 1.213 24 C -0.211 4.211 25 C -0.237 4.237 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.081 0.919 30 H 0.110 0.890 31 H 0.118 0.882 32 H 0.113 0.887 33 H 0.091 0.909 34 H 0.131 0.869 35 H 0.057 0.943 36 H 0.109 0.891 37 H 0.085 0.915 38 H 0.232 0.768 39 H 0.103 0.897 40 H 0.029 0.971 41 H 0.071 0.929 42 H 0.103 0.897 43 H 0.107 0.893 44 H 0.095 0.905 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 16.417 -7.559 5.734 18.961 hybrid contribution -0.736 1.082 -0.397 1.367 sum 15.681 -6.478 5.337 17.786 Atomic orbital electron populations 1.21942 0.96728 0.98835 1.01728 1.21913 0.95163 0.96060 1.02711 1.21689 0.96850 0.92497 0.84779 0.93187 1.22703 0.90614 1.00091 1.01736 1.22809 0.98796 0.99019 0.94822 1.22153 0.84015 0.97844 0.94992 0.91290 1.22126 1.01900 0.98939 0.98303 1.47765 1.03167 1.63029 1.22834 1.15747 0.82835 0.78924 0.81982 1.90894 1.41710 1.59709 1.58097 1.45217 1.10015 1.67689 1.14776 1.20766 0.81149 0.97634 0.95103 1.19220 1.00179 0.92218 0.87453 1.20844 1.24679 0.90540 1.17710 0.91927 1.25727 0.94672 1.02886 0.94554 1.69917 1.17987 1.36449 1.29829 0.85553 0.78262 0.80447 0.77688 1.18424 1.20735 1.21323 1.22819 0.92404 1.02270 1.03563 1.22962 0.95120 1.01701 1.03938 0.94430 0.94120 0.94378 0.91910 0.88975 0.88208 0.88668 0.90950 0.86898 0.94321 0.89103 0.91463 0.76841 0.89750 0.97084 0.92915 0.89658 0.89265 0.90535 0.91252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.60 8.08 71.98 0.58 -4.02 16 2 C -0.12 -3.00 5.46 30.60 0.17 -2.84 16 3 C 0.15 3.69 3.04 45.34 0.14 3.82 16 4 H 0.05 1.46 8.04 -2.39 -0.02 1.44 16 5 C -0.11 -1.70 6.10 31.78 0.19 -1.50 16 6 C -0.12 -1.78 6.58 32.06 0.21 -1.57 16 7 C 0.11 2.56 2.93 45.54 0.13 2.69 16 8 H 0.07 1.72 7.48 -2.39 -0.02 1.70 16 9 C -0.15 -2.95 9.52 71.98 0.69 -2.26 16 10 N -0.63 -19.52 2.71 -781.89 -2.12 -21.64 16 11 C 0.70 29.59 7.60 179.06 1.36 30.95 16 12 O -0.62 -30.98 11.80 -4.00 -0.05 -31.03 16 13 N -0.72 -31.03 5.36 -478.55 -2.56 -33.60 16 14 C 0.18 9.04 5.43 86.38 0.47 9.50 16 15 C 0.01 0.50 1.87 -52.93 -0.10 0.40 16 16 C -0.50 -26.53 9.02 25.60 0.23 -26.30 16 17 H 0.06 3.23 7.84 -2.91 -0.02 3.21 16 18 C 0.02 1.17 5.17 84.65 0.44 1.61 16 19 N -0.90 -52.51 10.78 21.45 0.23 -52.28 16 20 Si 0.95 43.10 29.56 68.60 2.03 45.13 16 21 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 22 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 23 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 24 C -0.17 -6.94 9.44 30.59 0.29 -6.65 16 25 C -0.20 -8.94 9.88 30.59 0.30 -8.64 16 26 H 0.04 1.56 5.60 -2.38 -0.01 1.55 16 27 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.04 1.46 6.95 -2.39 -0.02 1.44 16 29 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 30 H 0.09 1.74 8.14 -2.39 -0.02 1.73 16 31 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.09 1.11 7.41 -2.38 -0.02 1.10 16 33 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.11 1.07 8.05 -2.39 -0.02 1.05 16 35 H 0.04 0.92 8.08 -2.38 -0.02 0.90 16 36 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.07 1.17 7.36 -2.39 -0.02 1.15 16 38 H 0.40 15.25 6.72 -92.71 -0.62 14.63 16 39 H 0.08 5.04 5.14 -2.39 -0.01 5.03 16 40 H 0.01 0.58 7.87 -2.39 -0.02 0.56 16 41 H 0.26 14.62 8.32 -92.71 -0.77 13.85 16 42 H 0.09 3.11 8.14 -2.38 -0.02 3.09 16 43 H 0.09 3.35 8.14 -2.39 -0.02 3.33 16 44 H 0.08 3.45 8.14 -2.38 -0.02 3.43 16 45 H 0.07 3.03 8.03 -2.38 -0.02 3.01 16 Total: -1.00 -67.39 347.81 2.97 -64.43 By element: Atomic # 1 Polarization: 33.45 SS G_CDS: 0.34 Total: 33.79 kcal Atomic # 6 Polarization: -9.89 SS G_CDS: 5.10 Total: -4.79 kcal Atomic # 7 Polarization: -103.07 SS G_CDS: -4.45 Total: -107.52 kcal Atomic # 8 Polarization: -30.98 SS G_CDS: -0.05 Total: -31.03 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -67.39 2.97 -64.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431185784.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.998 kcal (2) G-P(sol) polarization free energy of solvation -67.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds