Wall clock time and date at job start Tue Mar 31 2020 02:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52994 * 109.47114 * 2 1 4 4 H 1.08997 * 115.55264 * 29.32785 * 3 2 1 5 5 C 1.53004 * 117.51670 * 243.62761 * 3 2 1 6 6 C 1.52999 * 117.49507 * 175.00104 * 3 2 1 7 7 H 1.08995 * 117.50446 * 359.97438 * 6 3 2 8 8 C 1.50706 * 117.49837 * 214.99841 * 6 3 2 9 9 O 1.21281 * 119.99772 * 359.97438 * 8 6 3 10 10 N 1.34769 * 120.00262 * 179.72582 * 8 6 3 11 11 C 1.46495 * 120.00333 * 180.27585 * 10 8 6 12 12 C 1.53000 * 109.47335 * 179.97438 * 11 10 8 13 13 H 1.08995 * 109.49948 * 55.00200 * 12 11 10 14 14 C 1.53045 * 109.49899 * 175.06579 * 12 11 10 15 15 C 1.53033 * 109.53969 * 181.31595 * 14 12 11 16 16 C 1.53196 * 109.31507 * 298.63444 * 15 14 12 17 17 N 1.46931 * 108.77216 * 54.63647 * 16 15 14 18 18 C 1.36930 * 120.63017 * 126.39255 * 17 16 15 19 19 H 1.07999 * 120.00390 * 332.57798 * 18 17 16 20 20 C 1.38820 * 119.99941 * 152.58135 * 18 17 16 21 21 N 1.31614 * 120.00099 * 159.34268 * 20 18 17 22 22 Si 1.86798 * 119.99818 * 339.33503 * 20 18 17 23 23 H 1.48506 * 109.46865 * 92.95132 * 22 20 18 24 24 H 1.48496 * 109.47328 * 212.94685 * 22 20 18 25 25 H 1.48499 * 109.47268 * 332.95336 * 22 20 18 26 26 C 1.46931 * 118.76200 * 306.40737 * 17 16 15 27 27 H 1.09006 * 109.46904 * 300.00320 * 1 2 3 28 28 H 1.09001 * 109.46736 * 59.99631 * 1 2 3 29 29 H 1.09001 * 109.47168 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46846 * 239.99727 * 2 1 3 31 31 H 1.09003 * 109.46455 * 119.99913 * 2 1 3 32 32 H 1.08993 * 117.50080 * 145.03053 * 5 3 2 33 33 H 1.09001 * 117.49600 * 0.02562 * 5 3 2 34 34 H 0.97000 * 119.99745 * 0.27664 * 10 8 6 35 35 H 1.09000 * 109.47201 * 300.00195 * 11 10 8 36 36 H 1.09003 * 109.47046 * 59.99912 * 11 10 8 37 37 H 1.08999 * 109.45814 * 301.34128 * 14 12 11 38 38 H 1.09001 * 109.46130 * 61.29424 * 14 12 11 39 39 H 1.09004 * 109.49744 * 58.58845 * 15 14 12 40 40 H 1.08995 * 109.50168 * 178.68063 * 15 14 12 41 41 H 1.08998 * 109.58921 * 174.41668 * 16 15 14 42 42 H 1.08998 * 109.58482 * 294.70626 * 16 15 14 43 43 H 0.96994 * 120.00009 * 180.02562 * 21 20 18 44 44 H 1.08996 * 109.56679 * 293.78906 * 26 17 16 45 45 H 1.09003 * 109.61206 * 173.35892 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.3885 2.1715 0.4817 5 6 2.8440 1.9080 -1.2157 6 6 3.5502 1.6577 0.1183 7 1 4.1803 0.7718 0.1965 8 6 4.0230 2.8616 0.8918 9 8 3.2160 3.6164 1.3917 10 7 5.3426 3.0968 1.0323 11 6 5.8022 4.2637 1.7893 12 6 7.3318 4.2968 1.7966 13 1 7.7012 4.2711 0.7715 14 6 7.8118 5.5790 2.4805 15 6 9.3412 5.6288 2.4592 16 6 9.8980 4.4301 3.2338 17 7 9.3265 3.1980 2.6733 18 6 10.1397 2.1765 2.2609 19 1 11.1437 2.3879 1.9237 20 6 9.6736 0.8689 2.2761 21 7 10.2553 -0.0458 1.5297 22 14 8.2210 0.4078 3.3562 23 1 6.9656 0.5172 2.5704 24 1 8.3844 -0.9879 3.8362 25 1 8.1580 1.3275 4.5203 26 6 7.8659 3.0826 2.5631 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8901 32 1 2.7213 2.9432 -1.5338 33 1 3.0093 1.1866 -2.0160 34 1 5.9880 2.4933 0.6321 35 1 5.4210 5.1723 1.3233 36 1 5.4356 4.1995 2.8139 37 1 7.4128 6.4442 1.9510 38 1 7.4624 5.5926 3.5129 39 1 9.6921 5.5904 1.4279 40 1 9.6817 6.5532 2.9255 41 1 10.9835 4.4057 3.1384 42 1 9.6255 4.5163 4.2857 43 1 9.9294 -0.9593 1.5400 44 1 7.4255 3.0570 3.5598 45 1 7.6106 2.1696 2.0250 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449933233.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:54 Heat of formation + Delta-G solvation = -12.659045 kcal Electronic energy + Delta-G solvation = -22536.660680 eV Core-core repulsion = 19361.589106 eV Total energy + Delta-G solvation = -3175.071574 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.98900 -38.30519 -37.03484 -34.75709 -33.10901 -32.22939 -31.10621 -30.54239 -26.38911 -25.32512 -24.18685 -23.55514 -22.38771 -20.95236 -20.63681 -19.97598 -19.31033 -17.24068 -16.84286 -15.91932 -15.58866 -15.16240 -14.79897 -14.58530 -14.16891 -14.08028 -13.89303 -13.34260 -13.29872 -12.91691 -12.70191 -12.57121 -12.38350 -12.27161 -12.08734 -11.63280 -11.51643 -11.46326 -11.19417 -10.81910 -10.62617 -10.54568 -10.39388 -10.16028 -10.14935 -9.97778 -9.72497 -9.65993 -9.48052 -8.88025 -8.66098 -7.01757 -6.00459 -3.35858 2.58846 3.23456 3.27797 3.44267 3.47678 3.75270 4.46568 4.51270 4.65747 4.72187 4.80480 5.00554 5.12064 5.15242 5.18159 5.23381 5.27300 5.31058 5.41527 5.51115 5.59736 5.62947 5.75409 5.79409 5.84223 5.85840 5.91455 5.96301 6.02385 6.08682 6.12288 6.23102 6.28693 6.32170 6.53009 6.54139 6.58189 6.66638 6.71949 6.94636 7.66898 7.91337 8.28034 8.35722 8.89406 9.66810 10.05551 11.15442 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.016695 B = 0.004892 C = 0.004059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.790780 B = 5722.432590 C = 6897.118154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.097 4.097 3 C -0.118 4.118 4 H 0.117 0.883 5 C -0.147 4.147 6 C -0.193 4.193 7 H 0.124 0.876 8 C 0.542 3.458 9 O -0.551 6.551 10 N -0.721 5.721 11 C 0.126 3.874 12 C -0.119 4.119 13 H 0.080 0.920 14 C -0.101 4.101 15 C -0.134 4.134 16 C 0.146 3.854 17 N -0.606 5.606 18 C -0.259 4.259 19 H 0.086 0.914 20 C 0.024 3.976 21 N -0.907 5.907 22 Si 0.880 3.120 23 H -0.288 1.288 24 H -0.303 1.303 25 H -0.272 1.272 26 C 0.134 3.866 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.098 0.902 33 H 0.104 0.896 34 H 0.406 0.594 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.054 0.946 38 H 0.058 0.942 39 H 0.062 0.938 40 H 0.056 0.944 41 H 0.062 0.938 42 H 0.022 0.978 43 H 0.262 0.738 44 H 0.025 0.975 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.694 4.994 -3.683 15.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.134 4.134 3 C -0.136 4.136 4 H 0.135 0.865 5 C -0.185 4.185 6 C -0.214 4.214 7 H 0.142 0.858 8 C 0.329 3.671 9 O -0.429 6.429 10 N -0.372 5.372 11 C 0.002 3.998 12 C -0.140 4.140 13 H 0.098 0.902 14 C -0.139 4.139 15 C -0.173 4.173 16 C 0.020 3.980 17 N -0.329 5.329 18 C -0.387 4.387 19 H 0.104 0.896 20 C -0.175 4.175 21 N -0.550 5.550 22 Si 0.710 3.290 23 H -0.216 1.216 24 H -0.231 1.231 25 H -0.197 1.197 26 C 0.008 3.992 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.116 0.884 33 H 0.122 0.878 34 H 0.241 0.759 35 H 0.083 0.917 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.081 0.919 42 H 0.040 0.960 43 H 0.072 0.928 44 H 0.043 0.957 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -14.193 5.361 -3.349 15.537 hybrid contribution -0.321 -0.730 0.450 0.916 sum -14.514 4.631 -2.899 15.508 Atomic orbital electron populations 1.21735 0.95241 1.01555 1.02046 1.21169 0.96176 0.93740 1.02324 1.22453 0.91445 0.98620 1.01115 0.86502 1.23084 1.02025 1.03034 0.90348 1.22349 0.97722 0.99296 1.02067 0.85778 1.19624 0.82278 0.85428 0.79796 1.90654 1.54074 1.48924 1.49261 1.46041 1.07030 1.29053 1.55035 1.21448 0.94649 0.87646 0.96057 1.21975 0.92135 0.98124 1.01737 0.90171 1.21344 0.96505 0.95918 1.00130 1.21988 0.95075 0.98730 1.01556 1.20959 0.97336 0.85516 0.94175 1.44348 1.00559 1.15789 1.72218 1.18952 0.98231 0.84753 1.36807 0.89618 1.25271 0.97904 0.95595 0.98730 1.69832 1.43160 1.03005 1.39022 0.87016 0.82403 0.76859 0.82686 1.21629 1.23131 1.19707 1.21368 0.85094 0.95875 0.96845 0.92553 0.92574 0.92664 0.91569 0.91349 0.88368 0.87792 0.75864 0.91735 0.91746 0.92769 0.92346 0.91937 0.92566 0.91922 0.96012 0.92762 0.95694 0.91174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.87 37.16 0.37 -0.85 16 2 C -0.10 -0.91 6.22 -26.73 -0.17 -1.08 16 3 C -0.12 -1.34 5.25 -90.62 -0.48 -1.81 16 4 H 0.12 1.48 7.60 -51.93 -0.39 1.09 16 5 C -0.15 -1.56 9.88 -26.73 -0.26 -1.82 16 6 C -0.19 -2.49 5.91 -91.77 -0.54 -3.03 16 7 H 0.12 1.51 8.14 -51.93 -0.42 1.09 16 8 C 0.54 8.68 7.61 -10.99 -0.08 8.60 16 9 O -0.55 -10.33 16.26 5.56 0.09 -10.24 16 10 N -0.72 -11.38 5.33 -60.30 -0.32 -11.70 16 11 C 0.13 1.98 5.07 -4.04 -0.02 1.96 16 12 C -0.12 -2.00 2.37 -90.49 -0.21 -2.21 16 13 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 14 C -0.10 -1.51 5.17 -26.69 -0.14 -1.65 16 15 C -0.13 -2.11 6.08 -26.61 -0.16 -2.27 16 16 C 0.15 2.81 6.52 -3.71 -0.02 2.78 16 17 N -0.61 -14.02 2.77 -172.31 -0.48 -14.50 16 18 C -0.26 -7.07 10.03 -15.06 -0.15 -7.23 16 19 H 0.09 2.50 8.06 -52.49 -0.42 2.08 16 20 C 0.02 0.67 5.23 -17.43 -0.09 0.58 16 21 N -0.91 -27.10 13.97 55.49 0.78 -26.32 16 22 Si 0.88 22.01 24.35 -169.99 -4.14 17.87 16 23 H -0.29 -6.79 6.62 56.52 0.37 -6.41 16 24 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 25 H -0.27 -6.85 6.64 56.52 0.38 -6.47 16 26 C 0.13 2.81 3.29 -3.70 -0.01 2.80 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.56 7.88 -51.93 -0.41 0.15 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.10 0.90 8.03 -51.93 -0.42 0.49 16 34 H 0.41 6.26 7.70 -40.82 -0.31 5.95 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 44 H 0.03 0.54 7.07 -51.93 -0.37 0.18 16 45 H 0.07 1.58 3.71 -51.93 -0.19 1.39 16 LS Contribution 351.81 15.07 5.30 5.30 Total: -1.00 -31.29 351.81 -8.79 -40.07 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -8.04 Total: 4.75 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: -1.98 Total: -5.23 kcal Atomic # 7 Polarization: -52.50 SS G_CDS: -0.02 Total: -52.52 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.09 Total: -10.24 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.14 Total: 17.87 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.29 -8.79 -40.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449933233.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.414 kcal (2) G-P(sol) polarization free energy of solvation -31.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds