Wall clock time and date at job start Tue Mar 31 2020 02:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52994 * 109.47114 * 2 1 4 4 H 1.08997 * 115.55264 * 29.32785 * 3 2 1 5 5 C 1.53004 * 117.51670 * 243.62761 * 3 2 1 6 6 C 1.52999 * 117.49507 * 175.00104 * 3 2 1 7 7 H 1.08995 * 117.50446 * 359.97438 * 6 3 2 8 8 C 1.50706 * 117.49837 * 214.99841 * 6 3 2 9 9 O 1.21281 * 119.99772 * 359.97438 * 8 6 3 10 10 N 1.34769 * 120.00262 * 179.72582 * 8 6 3 11 11 C 1.46495 * 120.00333 * 180.27585 * 10 8 6 12 12 C 1.53000 * 109.47335 * 179.97438 * 11 10 8 13 13 H 1.08995 * 109.49948 * 55.00200 * 12 11 10 14 14 C 1.53045 * 109.49899 * 175.06579 * 12 11 10 15 15 C 1.53033 * 109.53969 * 181.31595 * 14 12 11 16 16 C 1.53196 * 109.31507 * 298.63444 * 15 14 12 17 17 N 1.46931 * 108.77216 * 54.63647 * 16 15 14 18 18 C 1.36930 * 120.63017 * 126.39255 * 17 16 15 19 19 H 1.07999 * 120.00390 * 332.57798 * 18 17 16 20 20 C 1.38820 * 119.99941 * 152.58135 * 18 17 16 21 21 N 1.31614 * 120.00099 * 159.34268 * 20 18 17 22 22 Si 1.86798 * 119.99818 * 339.33503 * 20 18 17 23 23 H 1.48506 * 109.46865 * 92.95132 * 22 20 18 24 24 H 1.48496 * 109.47328 * 212.94685 * 22 20 18 25 25 H 1.48499 * 109.47268 * 332.95336 * 22 20 18 26 26 C 1.46931 * 118.76200 * 306.40737 * 17 16 15 27 27 H 1.09006 * 109.46904 * 300.00320 * 1 2 3 28 28 H 1.09001 * 109.46736 * 59.99631 * 1 2 3 29 29 H 1.09001 * 109.47168 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46846 * 239.99727 * 2 1 3 31 31 H 1.09003 * 109.46455 * 119.99913 * 2 1 3 32 32 H 1.08993 * 117.50080 * 145.03053 * 5 3 2 33 33 H 1.09001 * 117.49600 * 0.02562 * 5 3 2 34 34 H 0.97000 * 119.99745 * 0.27664 * 10 8 6 35 35 H 1.09000 * 109.47201 * 300.00195 * 11 10 8 36 36 H 1.09003 * 109.47046 * 59.99912 * 11 10 8 37 37 H 1.08999 * 109.45814 * 301.34128 * 14 12 11 38 38 H 1.09001 * 109.46130 * 61.29424 * 14 12 11 39 39 H 1.09004 * 109.49744 * 58.58845 * 15 14 12 40 40 H 1.08995 * 109.50168 * 178.68063 * 15 14 12 41 41 H 1.08998 * 109.58921 * 174.41668 * 16 15 14 42 42 H 1.08998 * 109.58482 * 294.70626 * 16 15 14 43 43 H 0.96994 * 120.00009 * 180.02562 * 21 20 18 44 44 H 1.08996 * 109.56679 * 293.78906 * 26 17 16 45 45 H 1.09003 * 109.61206 * 173.35892 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.3885 2.1715 0.4817 5 6 2.8440 1.9080 -1.2157 6 6 3.5502 1.6577 0.1183 7 1 4.1803 0.7718 0.1965 8 6 4.0230 2.8616 0.8918 9 8 3.2160 3.6164 1.3917 10 7 5.3426 3.0968 1.0323 11 6 5.8022 4.2637 1.7893 12 6 7.3318 4.2968 1.7966 13 1 7.7012 4.2711 0.7715 14 6 7.8118 5.5790 2.4805 15 6 9.3412 5.6288 2.4592 16 6 9.8980 4.4301 3.2338 17 7 9.3265 3.1980 2.6733 18 6 10.1397 2.1765 2.2609 19 1 11.1437 2.3879 1.9237 20 6 9.6736 0.8689 2.2761 21 7 10.2553 -0.0458 1.5297 22 14 8.2210 0.4078 3.3562 23 1 6.9656 0.5172 2.5704 24 1 8.3844 -0.9879 3.8362 25 1 8.1580 1.3275 4.5203 26 6 7.8659 3.0826 2.5631 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8901 32 1 2.7213 2.9432 -1.5338 33 1 3.0093 1.1866 -2.0160 34 1 5.9880 2.4933 0.6321 35 1 5.4210 5.1723 1.3233 36 1 5.4356 4.1995 2.8139 37 1 7.4128 6.4442 1.9510 38 1 7.4624 5.5926 3.5129 39 1 9.6921 5.5904 1.4279 40 1 9.6817 6.5532 2.9255 41 1 10.9835 4.4057 3.1384 42 1 9.6255 4.5163 4.2857 43 1 9.9294 -0.9593 1.5400 44 1 7.4255 3.0570 3.5598 45 1 7.6106 2.1696 2.0250 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449933233.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:53 Heat of formation + Delta-G solvation = -32.095531 kcal Electronic energy + Delta-G solvation = -22537.503509 eV Core-core repulsion = 19361.589106 eV Total energy + Delta-G solvation = -3175.914403 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.18683 -39.73594 -38.09189 -36.20687 -34.84246 -33.10368 -32.76484 -32.05836 -27.71619 -27.15739 -25.14120 -24.56764 -23.95304 -22.36448 -21.59888 -21.20303 -20.67665 -18.85366 -18.34495 -17.32691 -17.11011 -16.48947 -15.95780 -15.71696 -15.59124 -15.32672 -15.11291 -15.00091 -14.77967 -14.49021 -13.95752 -13.72016 -13.56490 -13.39998 -13.33796 -13.08484 -13.00194 -12.58770 -12.23185 -12.21477 -12.10054 -11.95421 -11.71488 -11.62021 -11.42716 -11.29050 -11.26346 -11.09278 -10.80602 -10.65807 -10.15984 -8.93671 -8.18223 -5.49133 1.23676 1.38601 1.41381 1.45774 2.11761 2.37155 2.80433 3.02407 3.31048 3.58500 3.72392 3.81273 3.82634 3.90102 3.96473 4.15294 4.24491 4.28968 4.43035 4.45729 4.47139 4.53999 4.58812 4.70313 4.74114 4.74850 4.86331 4.89975 4.94784 4.96306 5.08707 5.13178 5.18250 5.19964 5.22168 5.26254 5.28729 5.40566 5.47276 5.57537 5.86226 6.12139 6.42813 6.90865 7.12124 7.61314 8.02675 9.01696 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.016695 B = 0.004892 C = 0.004059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.790780 B = 5722.432590 C = 6897.118154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.095 4.095 3 C -0.116 4.116 4 H 0.100 0.900 5 C -0.129 4.129 6 C -0.212 4.212 7 H 0.131 0.869 8 C 0.539 3.461 9 O -0.583 6.583 10 N -0.723 5.723 11 C 0.131 3.869 12 C -0.105 4.105 13 H 0.075 0.925 14 C -0.099 4.099 15 C -0.124 4.124 16 C 0.137 3.863 17 N -0.621 5.621 18 C -0.249 4.249 19 H 0.054 0.946 20 C -0.026 4.026 21 N -0.952 5.952 22 Si 0.938 3.062 23 H -0.267 1.267 24 H -0.313 1.313 25 H -0.274 1.274 26 C 0.132 3.868 27 H 0.049 0.951 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.062 0.938 32 H 0.096 0.904 33 H 0.129 0.871 34 H 0.407 0.593 35 H 0.079 0.921 36 H 0.058 0.942 37 H 0.084 0.916 38 H 0.065 0.935 39 H 0.054 0.946 40 H 0.089 0.911 41 H 0.054 0.946 42 H 0.031 0.969 43 H 0.262 0.738 44 H 0.021 0.979 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.458 6.150 -3.959 17.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.132 4.132 3 C -0.134 4.134 4 H 0.118 0.882 5 C -0.166 4.166 6 C -0.233 4.233 7 H 0.149 0.851 8 C 0.327 3.673 9 O -0.464 6.464 10 N -0.373 5.373 11 C 0.007 3.993 12 C -0.126 4.126 13 H 0.093 0.907 14 C -0.137 4.137 15 C -0.163 4.163 16 C 0.012 3.988 17 N -0.345 5.345 18 C -0.378 4.378 19 H 0.072 0.928 20 C -0.221 4.221 21 N -0.598 5.598 22 Si 0.767 3.233 23 H -0.194 1.194 24 H -0.242 1.242 25 H -0.199 1.199 26 C 0.007 3.993 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.098 0.902 31 H 0.080 0.920 32 H 0.114 0.886 33 H 0.147 0.853 34 H 0.243 0.757 35 H 0.097 0.903 36 H 0.076 0.924 37 H 0.103 0.897 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.108 0.892 41 H 0.072 0.928 42 H 0.049 0.951 43 H 0.071 0.929 44 H 0.039 0.961 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -15.969 6.558 -3.620 17.639 hybrid contribution 0.308 -1.013 0.542 1.190 sum -15.661 5.545 -3.078 16.897 Atomic orbital electron populations 1.21728 0.94350 1.02330 1.02034 1.21191 0.96944 0.92355 1.02717 1.22491 0.90108 0.99486 1.01354 0.88181 1.23202 0.99820 1.03607 0.89976 1.22384 0.98839 0.98295 1.03759 0.85096 1.20132 0.81909 0.85865 0.79406 1.90632 1.54724 1.50318 1.50707 1.46126 1.07209 1.29102 1.54876 1.21392 0.93615 0.88315 0.95936 1.21793 0.92698 0.97236 1.00845 0.90683 1.21381 0.95790 0.95762 1.00761 1.21886 0.95571 0.98181 1.00667 1.21188 0.97117 0.85378 0.95111 1.44499 1.01261 1.15981 1.72734 1.18901 0.97567 0.86041 1.35321 0.92804 1.25778 1.00792 0.95606 0.99947 1.69944 1.45518 1.03369 1.40986 0.86066 0.80651 0.75603 0.80949 1.19375 1.24182 1.19880 1.21363 0.83832 0.97226 0.96913 0.93226 0.91978 0.91490 0.90159 0.91957 0.88592 0.85328 0.75722 0.90300 0.92383 0.89716 0.91655 0.92761 0.89222 0.92773 0.95105 0.92877 0.96082 0.93023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 9.87 71.98 0.71 -1.43 16 2 C -0.09 -1.60 6.22 30.59 0.19 -1.41 16 3 C -0.12 -2.46 5.25 -10.79 -0.06 -2.52 16 4 H 0.10 2.49 7.60 -2.39 -0.02 2.47 16 5 C -0.13 -2.44 9.88 30.60 0.30 -2.14 16 6 C -0.21 -5.16 5.91 -11.54 -0.07 -5.23 16 7 H 0.13 2.99 8.14 -2.39 -0.02 2.97 16 8 C 0.54 16.69 7.61 87.66 0.67 17.36 16 9 O -0.58 -21.45 16.26 -3.03 -0.05 -21.50 16 10 N -0.72 -21.87 5.33 -463.07 -2.47 -24.34 16 11 C 0.13 3.86 5.07 86.38 0.44 4.30 16 12 C -0.11 -3.31 2.37 -10.71 -0.03 -3.34 16 13 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 14 C -0.10 -2.61 5.17 30.62 0.16 -2.46 16 15 C -0.12 -3.54 6.08 30.67 0.19 -3.36 16 16 C 0.14 5.08 6.52 86.36 0.56 5.64 16 17 N -0.62 -28.44 2.77 -699.06 -1.94 -30.38 16 18 C -0.25 -13.83 10.03 84.04 0.84 -12.99 16 19 H 0.05 3.28 8.06 -2.91 -0.02 3.25 16 20 C -0.03 -1.49 5.23 84.86 0.44 -1.04 16 21 N -0.95 -58.31 13.97 21.65 0.30 -58.01 16 22 Si 0.94 45.98 24.35 68.60 1.67 47.65 16 23 H -0.27 -12.03 6.62 99.48 0.66 -11.37 16 24 H -0.31 -15.73 7.11 99.48 0.71 -15.02 16 25 H -0.27 -13.33 6.64 99.48 0.66 -12.67 16 26 C 0.13 5.36 3.29 86.36 0.28 5.64 16 27 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 28 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.08 1.14 7.88 -2.39 -0.02 1.12 16 31 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.13 1.81 8.03 -2.39 -0.02 1.79 16 34 H 0.41 12.13 7.70 -92.71 -0.71 11.42 16 35 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.05 2.06 7.93 -2.39 -0.02 2.04 16 42 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 44 H 0.02 0.88 7.07 -2.39 -0.02 0.87 16 45 H 0.05 2.28 3.71 -2.39 -0.01 2.27 16 Total: -1.00 -68.40 351.81 2.30 -66.10 By element: Atomic # 1 Polarization: 23.30 SS G_CDS: 0.14 Total: 23.44 kcal Atomic # 6 Polarization: -7.60 SS G_CDS: 4.64 Total: -2.96 kcal Atomic # 7 Polarization: -108.63 SS G_CDS: -4.10 Total: -112.73 kcal Atomic # 8 Polarization: -21.45 SS G_CDS: -0.05 Total: -21.50 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 1.67 Total: 47.65 kcal Total: -68.40 2.30 -66.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449933233.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.003 kcal (2) G-P(sol) polarization free energy of solvation -68.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds