Wall clock time and date at job start Tue Mar 31 2020 02:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52998 * 109.47207 * 2 1 4 4 H 1.09005 * 115.55108 * 29.40912 * 3 2 1 5 5 C 1.53000 * 117.51648 * 243.71437 * 3 2 1 6 6 C 1.52994 * 117.49648 * 175.08791 * 3 2 1 7 7 H 1.08993 * 117.50288 * 0.02562 * 6 3 2 8 8 C 1.50710 * 117.49624 * 215.02444 * 6 3 2 9 9 O 1.21278 * 119.99675 * 359.97438 * 8 6 3 10 10 N 1.34768 * 119.99975 * 180.02562 * 8 6 3 11 11 C 1.46507 * 120.00054 * 179.97438 * 10 8 6 12 12 C 1.53003 * 109.46919 * 179.97438 * 11 10 8 13 13 H 1.08995 * 109.49572 * 304.93585 * 12 11 10 14 14 C 1.53047 * 109.49283 * 184.84117 * 12 11 10 15 15 C 1.53039 * 109.53667 * 178.68446 * 14 12 11 16 16 C 1.53197 * 109.31279 * 61.36321 * 15 14 12 17 17 N 1.46929 * 108.77413 * 305.36545 * 16 15 14 18 18 C 1.36936 * 120.62777 * 233.63185 * 17 16 15 19 19 H 1.08000 * 120.00077 * 151.81225 * 18 17 16 20 20 C 1.38810 * 120.00328 * 331.80576 * 18 17 16 21 21 N 1.31618 * 119.99772 * 343.09213 * 20 18 17 22 22 Si 1.86804 * 120.00190 * 163.09388 * 20 18 17 23 23 H 1.48492 * 109.47008 * 60.00167 * 22 20 18 24 24 H 1.48498 * 109.46972 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.46613 * 299.99654 * 22 20 18 26 26 C 1.46923 * 118.73899 * 53.60973 * 17 16 15 27 27 H 1.08997 * 109.47203 * 300.01023 * 1 2 3 28 28 H 1.08999 * 109.46626 * 60.00099 * 1 2 3 29 29 H 1.08998 * 109.47303 * 180.02562 * 1 2 3 30 30 H 1.08990 * 109.46929 * 239.99279 * 2 1 3 31 31 H 1.08995 * 109.46316 * 119.99534 * 2 1 3 32 32 H 1.08998 * 117.49551 * 0.02562 * 5 3 2 33 33 H 1.08998 * 117.50156 * 145.02376 * 5 3 2 34 34 H 0.96999 * 120.00482 * 359.97438 * 10 8 6 35 35 H 1.08995 * 109.46985 * 299.99854 * 11 10 8 36 36 H 1.09004 * 109.46603 * 60.00288 * 11 10 8 37 37 H 1.08996 * 109.45904 * 298.70053 * 14 12 11 38 38 H 1.08992 * 109.46211 * 58.66449 * 14 12 11 39 39 H 1.09007 * 109.49522 * 301.41437 * 15 14 12 40 40 H 1.08992 * 109.52477 * 181.33169 * 15 14 12 41 41 H 1.08997 * 109.58733 * 185.58124 * 16 15 14 42 42 H 1.08992 * 109.70328 * 65.22323 * 16 15 14 43 43 H 0.97000 * 120.00298 * 179.97438 * 21 20 18 44 44 H 1.09005 * 109.58502 * 186.60331 * 26 17 16 45 45 H 1.09000 * 109.58679 * 66.17914 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.3891 2.1713 0.4829 5 6 2.8423 1.9086 -1.2166 6 6 3.5504 1.6577 0.1162 7 1 4.1807 0.7718 0.1922 8 6 4.0242 2.8609 0.8902 9 8 3.2179 3.6151 1.3920 10 7 5.3439 3.0993 1.0238 11 6 5.8046 4.2693 1.7757 12 6 7.3342 4.3057 1.7757 13 1 7.7205 3.3625 2.1619 14 6 7.8177 5.4571 2.6604 15 6 9.3477 5.4742 2.6873 16 6 9.8769 5.7002 1.2675 17 7 9.3003 4.6809 0.3801 18 6 10.1082 3.8971 -0.3996 19 1 9.7882 2.9051 -0.6823 20 6 11.3385 4.3774 -0.8268 21 7 11.5939 5.6677 -0.7785 22 14 12.6315 3.1927 -1.4704 23 1 12.0973 2.4721 -2.6537 24 1 13.8472 3.9511 -1.8606 25 1 12.9776 2.2136 -0.4090 26 6 7.8405 4.5184 0.3456 27 1 -0.3633 0.5140 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8898 31 1 1.8933 -0.5138 0.8900 32 1 3.0064 1.1877 -2.0175 33 1 2.7191 2.9440 -1.5341 34 1 5.9889 2.4963 0.6221 35 1 5.4192 5.1758 1.3092 36 1 5.4430 4.2068 2.8022 37 1 7.4510 6.4019 2.2593 38 1 7.4382 5.3210 3.6730 39 1 9.7156 4.5202 3.0651 40 1 9.6917 6.2796 3.3362 41 1 10.9635 5.6147 1.2646 42 1 9.5875 6.6923 0.9210 43 1 12.4537 6.0034 -1.0767 44 1 7.5835 3.6532 -0.2655 45 1 7.3829 5.4141 -0.0746 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449933234.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:58 Heat of formation + Delta-G solvation = -18.183315 kcal Electronic energy + Delta-G solvation = -22037.965142 eV Core-core repulsion = 18862.654018 eV Total energy + Delta-G solvation = -3175.311124 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.01364 -38.06303 -37.01386 -34.75284 -33.00082 -32.26117 -30.47186 -30.35096 -26.16730 -25.29649 -24.17621 -23.45649 -22.08455 -20.97296 -20.65383 -20.02216 -19.01254 -17.29263 -16.62739 -15.88836 -15.33064 -14.97742 -14.79653 -14.64548 -14.14791 -14.10883 -13.64693 -13.42886 -12.83491 -12.75939 -12.62021 -12.35324 -12.32148 -12.19732 -12.15705 -11.55784 -11.29781 -11.25269 -11.02428 -10.72024 -10.52929 -10.44073 -10.26060 -10.21203 -10.18948 -9.96292 -9.80655 -9.52237 -9.43664 -8.89496 -8.48177 -6.69027 -5.80963 -3.24223 2.55361 3.22366 3.35875 3.42122 3.42750 3.71595 4.45206 4.46761 4.60371 4.67144 4.94415 5.03114 5.09804 5.12300 5.21834 5.29481 5.43282 5.46423 5.47715 5.58314 5.61884 5.69550 5.77526 5.82567 5.86384 5.89942 5.95916 6.00518 6.17076 6.23175 6.32656 6.36810 6.54173 6.58357 6.69581 6.76968 6.84917 6.95555 7.38451 7.63556 7.66086 7.76192 8.32865 8.42658 9.18774 9.82254 10.39387 11.27333 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.020502 B = 0.003500 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.413240 B = 7997.863332 C = 9048.430360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.095 4.095 3 C -0.120 4.120 4 H 0.117 0.883 5 C -0.148 4.148 6 C -0.191 4.191 7 H 0.122 0.878 8 C 0.540 3.460 9 O -0.550 6.550 10 N -0.719 5.719 11 C 0.127 3.873 12 C -0.117 4.117 13 H 0.073 0.927 14 C -0.100 4.100 15 C -0.142 4.142 16 C 0.169 3.831 17 N -0.591 5.591 18 C -0.255 4.255 19 H 0.064 0.936 20 C 0.003 3.997 21 N -0.902 5.902 22 Si 0.902 3.098 23 H -0.283 1.283 24 H -0.290 1.290 25 H -0.284 1.284 26 C 0.155 3.845 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.104 0.896 33 H 0.099 0.901 34 H 0.404 0.596 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.056 0.944 38 H 0.047 0.953 39 H 0.054 0.946 40 H 0.050 0.950 41 H 0.086 0.914 42 H 0.018 0.982 43 H 0.255 0.745 44 H 0.050 0.950 45 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.610 -8.414 3.039 17.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.132 4.132 3 C -0.138 4.138 4 H 0.135 0.865 5 C -0.185 4.185 6 C -0.212 4.212 7 H 0.140 0.860 8 C 0.327 3.673 9 O -0.428 6.428 10 N -0.370 5.370 11 C 0.003 3.997 12 C -0.138 4.138 13 H 0.091 0.909 14 C -0.138 4.138 15 C -0.181 4.181 16 C 0.043 3.957 17 N -0.314 5.314 18 C -0.385 4.385 19 H 0.082 0.918 20 C -0.196 4.196 21 N -0.546 5.546 22 Si 0.732 3.268 23 H -0.209 1.209 24 H -0.216 1.216 25 H -0.210 1.210 26 C 0.028 3.972 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.122 0.878 33 H 0.117 0.883 34 H 0.239 0.761 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.104 0.896 42 H 0.036 0.964 43 H 0.065 0.935 44 H 0.069 0.931 45 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -15.994 -7.762 3.330 18.087 hybrid contribution 1.222 -0.792 -0.512 1.544 sum -14.771 -8.554 2.818 17.300 Atomic orbital electron populations 1.21740 0.95250 1.01543 1.02142 1.21155 0.96205 0.93745 1.02143 1.22462 0.91492 0.98571 1.01297 0.86514 1.23096 1.01864 1.03233 0.90320 1.22314 0.97534 0.99141 1.02204 0.85957 1.19634 0.82369 0.85500 0.79835 1.90669 1.54144 1.48924 1.49049 1.46013 1.06825 1.28831 1.55297 1.21464 0.94898 0.87726 0.95579 1.21954 0.91751 0.99882 1.00231 0.90893 1.21339 0.97115 0.97611 0.97709 1.22169 0.94505 1.00520 1.00882 1.20796 0.99524 0.90465 0.84911 1.44027 0.99294 1.41814 1.46235 1.19114 0.98820 0.94822 1.25719 0.91814 1.25049 1.00008 0.95391 0.99114 1.70026 1.23065 1.11083 1.50415 0.86373 0.81288 0.80355 0.78765 1.20882 1.21624 1.21023 1.20891 0.86257 0.98280 0.91798 0.92530 0.92519 0.92692 0.91635 0.91463 0.87801 0.88252 0.76122 0.91662 0.92054 0.92484 0.93456 0.92764 0.93174 0.89597 0.96425 0.93548 0.93150 0.96395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.87 37.16 0.37 -0.68 16 2 C -0.10 -0.74 6.22 -26.73 -0.17 -0.90 16 3 C -0.12 -1.19 5.25 -90.62 -0.48 -1.66 16 4 H 0.12 1.35 7.60 -51.93 -0.39 0.96 16 5 C -0.15 -1.42 9.88 -26.73 -0.26 -1.68 16 6 C -0.19 -2.06 5.91 -91.77 -0.54 -2.60 16 7 H 0.12 1.09 8.14 -51.93 -0.42 0.67 16 8 C 0.54 7.70 7.61 -10.98 -0.08 7.61 16 9 O -0.55 -9.73 16.26 5.56 0.09 -9.64 16 10 N -0.72 -9.82 5.33 -60.29 -0.32 -10.14 16 11 C 0.13 1.89 5.07 -4.04 -0.02 1.87 16 12 C -0.12 -1.94 2.38 -90.50 -0.22 -2.15 16 13 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 14 C -0.10 -1.64 5.17 -26.69 -0.14 -1.78 16 15 C -0.14 -2.66 6.08 -26.61 -0.16 -2.82 16 16 C 0.17 3.98 5.30 -3.71 -0.02 3.96 16 17 N -0.59 -14.48 2.99 -172.32 -0.52 -14.99 16 18 C -0.26 -6.85 9.58 -15.06 -0.14 -6.99 16 19 H 0.06 1.66 7.88 -52.49 -0.41 1.25 16 20 C 0.00 0.09 4.92 -17.43 -0.09 0.00 16 21 N -0.90 -25.97 11.20 55.49 0.62 -25.35 16 22 Si 0.90 21.34 29.59 -169.99 -5.03 16.31 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 26 C 0.15 3.11 5.60 -3.71 -0.02 3.08 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.45 7.88 -51.93 -0.41 0.04 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.10 0.81 8.03 -51.93 -0.42 0.39 16 33 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.40 4.94 7.70 -40.82 -0.31 4.63 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.05 1.04 8.14 -51.92 -0.42 0.61 16 40 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.09 2.27 6.06 -51.93 -0.31 1.96 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 44 H 0.05 0.97 7.13 -51.93 -0.37 0.60 16 45 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 358.24 15.07 5.40 5.40 Total: -1.00 -30.74 358.24 -9.84 -40.58 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -8.11 Total: 2.58 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: -1.97 Total: -4.74 kcal Atomic # 7 Polarization: -50.27 SS G_CDS: -0.22 Total: -50.48 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.09 Total: -9.64 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.31 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.74 -9.84 -40.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449933234.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.397 kcal (2) G-P(sol) polarization free energy of solvation -30.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds