Wall clock time and date at job start Tue Mar 31 2020 02:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52998 * 109.47207 * 2 1 4 4 H 1.09005 * 115.55108 * 29.40912 * 3 2 1 5 5 C 1.53000 * 117.51648 * 243.71437 * 3 2 1 6 6 C 1.52994 * 117.49648 * 175.08791 * 3 2 1 7 7 H 1.08993 * 117.50288 * 0.02562 * 6 3 2 8 8 C 1.50710 * 117.49624 * 215.02444 * 6 3 2 9 9 O 1.21278 * 119.99675 * 359.97438 * 8 6 3 10 10 N 1.34768 * 119.99975 * 180.02562 * 8 6 3 11 11 C 1.46507 * 120.00054 * 179.97438 * 10 8 6 12 12 C 1.53003 * 109.46919 * 179.97438 * 11 10 8 13 13 H 1.08995 * 109.49572 * 304.93585 * 12 11 10 14 14 C 1.53047 * 109.49283 * 184.84117 * 12 11 10 15 15 C 1.53039 * 109.53667 * 178.68446 * 14 12 11 16 16 C 1.53197 * 109.31279 * 61.36321 * 15 14 12 17 17 N 1.46929 * 108.77413 * 305.36545 * 16 15 14 18 18 C 1.36936 * 120.62777 * 233.63185 * 17 16 15 19 19 H 1.08000 * 120.00077 * 151.81225 * 18 17 16 20 20 C 1.38810 * 120.00328 * 331.80576 * 18 17 16 21 21 N 1.31618 * 119.99772 * 343.09213 * 20 18 17 22 22 Si 1.86804 * 120.00190 * 163.09388 * 20 18 17 23 23 H 1.48492 * 109.47008 * 60.00167 * 22 20 18 24 24 H 1.48498 * 109.46972 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.46613 * 299.99654 * 22 20 18 26 26 C 1.46923 * 118.73899 * 53.60973 * 17 16 15 27 27 H 1.08997 * 109.47203 * 300.01023 * 1 2 3 28 28 H 1.08999 * 109.46626 * 60.00099 * 1 2 3 29 29 H 1.08998 * 109.47303 * 180.02562 * 1 2 3 30 30 H 1.08990 * 109.46929 * 239.99279 * 2 1 3 31 31 H 1.08995 * 109.46316 * 119.99534 * 2 1 3 32 32 H 1.08998 * 117.49551 * 0.02562 * 5 3 2 33 33 H 1.08998 * 117.50156 * 145.02376 * 5 3 2 34 34 H 0.96999 * 120.00482 * 359.97438 * 10 8 6 35 35 H 1.08995 * 109.46985 * 299.99854 * 11 10 8 36 36 H 1.09004 * 109.46603 * 60.00288 * 11 10 8 37 37 H 1.08996 * 109.45904 * 298.70053 * 14 12 11 38 38 H 1.08992 * 109.46211 * 58.66449 * 14 12 11 39 39 H 1.09007 * 109.49522 * 301.41437 * 15 14 12 40 40 H 1.08992 * 109.52477 * 181.33169 * 15 14 12 41 41 H 1.08997 * 109.58733 * 185.58124 * 16 15 14 42 42 H 1.08992 * 109.70328 * 65.22323 * 16 15 14 43 43 H 0.97000 * 120.00298 * 179.97438 * 21 20 18 44 44 H 1.09005 * 109.58502 * 186.60331 * 26 17 16 45 45 H 1.09000 * 109.58679 * 66.17914 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.3891 2.1713 0.4829 5 6 2.8423 1.9086 -1.2166 6 6 3.5504 1.6577 0.1162 7 1 4.1807 0.7718 0.1922 8 6 4.0242 2.8609 0.8902 9 8 3.2179 3.6151 1.3920 10 7 5.3439 3.0993 1.0238 11 6 5.8046 4.2693 1.7757 12 6 7.3342 4.3057 1.7757 13 1 7.7205 3.3625 2.1619 14 6 7.8177 5.4571 2.6604 15 6 9.3477 5.4742 2.6873 16 6 9.8769 5.7002 1.2675 17 7 9.3003 4.6809 0.3801 18 6 10.1082 3.8971 -0.3996 19 1 9.7882 2.9051 -0.6823 20 6 11.3385 4.3774 -0.8268 21 7 11.5939 5.6677 -0.7785 22 14 12.6315 3.1927 -1.4704 23 1 12.0973 2.4721 -2.6537 24 1 13.8472 3.9511 -1.8606 25 1 12.9776 2.2136 -0.4090 26 6 7.8405 4.5184 0.3456 27 1 -0.3633 0.5140 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8898 31 1 1.8933 -0.5138 0.8900 32 1 3.0064 1.1877 -2.0175 33 1 2.7191 2.9440 -1.5341 34 1 5.9889 2.4963 0.6221 35 1 5.4192 5.1758 1.3092 36 1 5.4430 4.2068 2.8022 37 1 7.4510 6.4019 2.2593 38 1 7.4382 5.3210 3.6730 39 1 9.7156 4.5202 3.0651 40 1 9.6917 6.2796 3.3362 41 1 10.9635 5.6147 1.2646 42 1 9.5875 6.6923 0.9210 43 1 12.4537 6.0034 -1.0767 44 1 7.5835 3.6532 -0.2655 45 1 7.3829 5.4141 -0.0746 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449933234.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:49:57 Heat of formation + Delta-G solvation = -35.833212 kcal Electronic energy + Delta-G solvation = -22038.730499 eV Core-core repulsion = 18862.654018 eV Total energy + Delta-G solvation = -3176.076481 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.10560 -39.51131 -38.01967 -36.21091 -34.66497 -32.94301 -32.30543 -31.87024 -27.50545 -27.16517 -24.97616 -24.43783 -23.78722 -22.42443 -21.52174 -21.13984 -20.46433 -18.71454 -18.17084 -17.03557 -16.82679 -16.51847 -15.79848 -15.75176 -15.48041 -15.22858 -15.02141 -14.94317 -14.52420 -14.01413 -13.77135 -13.69187 -13.49782 -13.29797 -13.02133 -12.96919 -12.85062 -12.48629 -12.30973 -12.17312 -11.98472 -11.90978 -11.83477 -11.59210 -11.37779 -11.21042 -11.11610 -11.02190 -10.72750 -10.52409 -10.07853 -8.67799 -7.86513 -5.32835 1.47863 1.49171 1.50344 1.56911 2.17177 2.51684 2.88016 3.28293 3.58170 3.66789 3.79604 3.87955 3.98244 3.99950 4.05697 4.20886 4.29668 4.39576 4.50394 4.55763 4.57582 4.62282 4.74859 4.79894 4.86833 4.88498 4.95199 4.99894 5.01484 5.09650 5.17199 5.22452 5.24217 5.31353 5.32337 5.38110 5.47794 5.52211 5.56827 5.66587 5.77873 6.39141 6.55242 7.15077 7.22856 7.86285 8.38741 9.19751 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.020502 B = 0.003500 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1365.413240 B = 7997.863332 C = 9048.430360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.091 4.091 3 C -0.118 4.118 4 H 0.094 0.906 5 C -0.140 4.140 6 C -0.197 4.197 7 H 0.147 0.853 8 C 0.536 3.464 9 O -0.590 6.590 10 N -0.715 5.715 11 C 0.137 3.863 12 C -0.099 4.099 13 H 0.077 0.923 14 C -0.098 4.098 15 C -0.130 4.130 16 C 0.172 3.828 17 N -0.609 5.609 18 C -0.263 4.263 19 H 0.071 0.929 20 C -0.053 4.053 21 N -0.937 5.937 22 Si 0.968 3.032 23 H -0.274 1.274 24 H -0.297 1.297 25 H -0.277 1.277 26 C 0.154 3.846 27 H 0.048 0.952 28 H 0.056 0.944 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.129 0.871 33 H 0.085 0.915 34 H 0.412 0.588 35 H 0.053 0.947 36 H 0.070 0.930 37 H 0.054 0.946 38 H 0.080 0.920 39 H 0.054 0.946 40 H 0.069 0.931 41 H 0.052 0.948 42 H -0.008 1.008 43 H 0.249 0.751 44 H 0.057 0.943 45 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.456 -10.673 3.376 19.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.128 4.128 3 C -0.137 4.137 4 H 0.112 0.888 5 C -0.178 4.178 6 C -0.218 4.218 7 H 0.165 0.835 8 C 0.324 3.676 9 O -0.471 6.471 10 N -0.365 5.365 11 C 0.013 3.987 12 C -0.120 4.120 13 H 0.096 0.904 14 C -0.136 4.136 15 C -0.169 4.169 16 C 0.047 3.953 17 N -0.332 5.332 18 C -0.393 4.393 19 H 0.089 0.911 20 C -0.248 4.248 21 N -0.583 5.583 22 Si 0.796 3.204 23 H -0.199 1.199 24 H -0.224 1.224 25 H -0.203 1.203 26 C 0.028 3.972 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.088 0.912 32 H 0.147 0.853 33 H 0.104 0.896 34 H 0.249 0.751 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.072 0.928 38 H 0.098 0.902 39 H 0.072 0.928 40 H 0.088 0.912 41 H 0.070 0.930 42 H 0.010 0.990 43 H 0.058 0.942 44 H 0.076 0.924 45 H 0.021 0.979 Dipole moment (debyes) X Y Z Total from point charges -16.856 -10.050 3.670 19.965 hybrid contribution 1.433 -0.039 -0.636 1.569 sum -15.423 -10.089 3.034 18.677 Atomic orbital electron populations 1.21746 0.94894 1.02277 1.01810 1.21165 0.96495 0.92126 1.03007 1.22478 0.90589 0.99522 1.01107 0.88773 1.23188 1.00886 1.03198 0.90511 1.22372 0.98440 0.98386 1.02558 0.83520 1.20231 0.81972 0.85989 0.79368 1.90650 1.55054 1.50568 1.50809 1.45983 1.07074 1.28490 1.54979 1.21261 0.93405 0.87892 0.96161 1.21711 0.92655 1.00124 0.97480 0.90417 1.21341 0.95239 0.97450 0.99534 1.21996 0.96136 1.01193 0.97540 1.20636 0.97712 0.89204 0.87798 1.44302 1.00984 1.41593 1.46356 1.19516 0.99284 0.95364 1.25141 0.91105 1.25836 1.02060 0.96765 1.00128 1.70194 1.23138 1.12892 1.52103 0.85335 0.78368 0.78270 0.78442 1.19925 1.22375 1.20276 1.21005 0.83881 0.97861 0.94454 0.93304 0.92499 0.91396 0.90114 0.91168 0.85269 0.89638 0.75128 0.92830 0.91162 0.92766 0.90193 0.92762 0.91233 0.93005 0.99001 0.94188 0.92430 0.97859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.87 71.99 0.71 -1.12 16 2 C -0.09 -1.19 6.22 30.60 0.19 -1.00 16 3 C -0.12 -2.17 5.25 -10.80 -0.06 -2.23 16 4 H 0.09 2.18 7.60 -2.38 -0.02 2.17 16 5 C -0.14 -2.44 9.88 30.59 0.30 -2.14 16 6 C -0.20 -3.87 5.91 -11.54 -0.07 -3.93 16 7 H 0.15 2.15 8.14 -2.39 -0.02 2.13 16 8 C 0.54 14.68 7.61 87.66 0.67 15.35 16 9 O -0.59 -20.76 16.26 -3.02 -0.05 -20.81 16 10 N -0.71 -18.34 5.33 -463.05 -2.47 -20.81 16 11 C 0.14 3.85 5.07 86.38 0.44 4.29 16 12 C -0.10 -3.09 2.38 -10.71 -0.03 -3.12 16 13 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 14 C -0.10 -3.02 5.17 30.62 0.16 -2.86 16 15 C -0.13 -4.72 6.08 30.67 0.19 -4.53 16 16 C 0.17 8.29 5.30 86.36 0.46 8.74 16 17 N -0.61 -29.98 2.99 -699.11 -2.09 -32.08 16 18 C -0.26 -14.12 9.58 84.03 0.81 -13.31 16 19 H 0.07 3.62 7.88 -2.91 -0.02 3.60 16 20 C -0.05 -2.91 4.92 84.86 0.42 -2.49 16 21 N -0.94 -55.51 11.20 21.65 0.24 -55.26 16 22 Si 0.97 44.11 29.59 68.60 2.03 46.14 16 23 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 24 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 25 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 26 C 0.15 6.09 5.60 86.36 0.48 6.58 16 27 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.08 0.84 7.88 -2.39 -0.02 0.82 16 31 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.13 1.59 8.03 -2.39 -0.02 1.57 16 33 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.41 9.22 7.70 -92.71 -0.71 8.50 16 35 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 40 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 41 H 0.05 2.83 6.06 -2.39 -0.01 2.82 16 42 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 43 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 44 H 0.06 2.16 7.13 -2.38 -0.02 2.14 16 45 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 Total: -1.00 -67.59 358.24 2.56 -65.03 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: 0.23 Total: 19.57 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: 4.67 Total: -1.77 kcal Atomic # 7 Polarization: -103.83 SS G_CDS: -4.32 Total: -108.15 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: -0.05 Total: -20.81 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -67.59 2.56 -65.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449933234.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.196 kcal (2) G-P(sol) polarization free energy of solvation -67.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds