Wall clock time and date at job start Tue Mar 31 2020 01:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52998 * 109.47286 * 2 1 4 4 C 1.53003 * 109.47092 * 119.99869 * 2 1 3 5 5 H 1.09004 * 115.56397 * 274.31730 * 4 2 1 6 6 C 1.52992 * 117.50364 * 128.62333 * 4 2 1 7 7 C 1.53002 * 60.00344 * 252.51118 * 6 4 2 8 8 H 1.09000 * 117.49788 * 107.51076 * 7 6 4 9 9 C 1.52999 * 117.49758 * 252.51130 * 7 6 4 10 10 N 1.46497 * 109.46968 * 243.60449 * 9 7 6 11 11 C 1.34779 * 120.00221 * 179.97438 * 10 9 7 12 12 O 1.21585 * 119.99537 * 4.94810 * 11 10 9 13 13 N 1.34773 * 119.99952 * 184.94037 * 11 10 9 14 14 C 1.46501 * 119.99816 * 184.95569 * 13 11 10 15 15 C 1.52997 * 109.47306 * 184.69563 * 14 13 11 16 16 C 1.50699 * 115.54832 * 301.50092 * 15 14 13 17 17 H 1.08004 * 120.00542 * 114.70851 * 16 15 14 18 18 C 1.37884 * 119.99886 * 294.70452 * 16 15 14 19 19 N 1.31512 * 119.99768 * 184.42583 * 18 16 15 20 20 Si 1.86796 * 119.99830 * 4.42728 * 18 16 15 21 21 H 1.48494 * 109.47286 * 85.05044 * 20 18 16 22 22 H 1.48500 * 109.46994 * 205.04836 * 20 18 16 23 23 H 1.48501 * 109.47195 * 325.04744 * 20 18 16 24 24 C 1.52999 * 117.50163 * 87.16592 * 15 14 13 25 25 C 1.53000 * 117.50492 * 155.82742 * 15 14 13 26 26 H 1.08999 * 109.47148 * 60.00570 * 1 2 3 27 27 H 1.09007 * 109.47060 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47413 * 300.00281 * 1 2 3 29 29 H 1.08998 * 109.47413 * 239.99719 * 2 1 3 30 30 H 1.09003 * 109.47336 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.47265 * 300.00043 * 3 2 1 32 32 H 1.09006 * 109.47202 * 59.99871 * 3 2 1 33 33 H 1.09003 * 117.50390 * 145.02132 * 6 4 2 34 34 H 1.09004 * 117.51917 * 359.97438 * 6 4 2 35 35 H 1.08998 * 109.47082 * 123.60333 * 9 7 6 36 36 H 1.08996 * 109.47059 * 3.60169 * 9 7 6 37 37 H 0.97006 * 120.00361 * 359.97438 * 10 9 7 38 38 H 0.96998 * 120.00672 * 4.96437 * 13 11 10 39 39 H 1.08997 * 109.47307 * 64.69518 * 14 13 11 40 40 H 1.09009 * 109.46867 * 304.69182 * 14 13 11 41 41 H 0.97005 * 119.99599 * 180.02562 * 19 18 16 42 42 H 1.09004 * 117.50138 * 215.00391 * 24 15 14 43 43 H 1.08998 * 117.49900 * 0.02800 * 24 15 14 44 44 H 1.09007 * 117.49197 * 359.97438 * 25 15 14 45 45 H 1.08994 * 117.50036 * 144.98801 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 2.1269 -0.1061 2.1450 6 6 3.0740 -1.8313 1.0516 7 6 1.6356 -2.1852 1.4344 8 1 1.0065 -2.6349 0.6662 9 6 1.3844 -2.6736 2.8624 10 7 0.8957 -4.0542 2.8275 11 6 0.6058 -4.6958 3.9767 12 8 0.6634 -4.1015 5.0359 13 7 0.2519 -5.9960 3.9519 14 6 -0.1680 -6.6646 5.1859 15 6 -0.4002 -8.1509 4.9072 16 6 -1.4295 -8.4610 3.8511 17 1 -1.1307 -8.9377 2.9291 18 6 -2.7529 -8.1363 4.0618 19 7 -3.6639 -8.4846 3.1795 20 14 -3.2517 -7.2019 5.6004 21 1 -3.0794 -5.7447 5.3722 22 1 -4.6744 -7.4889 5.9144 23 1 -2.3978 -7.6292 6.7377 24 6 0.8054 -9.0868 5.0149 25 6 -0.2860 -9.1175 6.0877 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 3.8415 -1.9465 1.8170 34 1 3.3910 -2.0484 0.0315 35 1 0.6393 -2.0363 3.3386 36 1 2.3143 -2.6316 3.4296 37 1 0.7807 -4.5067 1.9771 38 1 0.2753 -6.4892 3.1170 39 1 -1.0924 -6.2139 5.5469 40 1 0.6097 -6.5539 5.9418 41 1 -4.5948 -8.2558 3.3276 42 1 0.8541 -9.9268 4.3219 43 1 1.7640 -8.6436 5.2848 44 1 -0.0450 -8.6945 7.0629 45 1 -0.9555 -9.9776 6.1005 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000454880675.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:53 Heat of formation + Delta-G solvation = -0.464653 kcal Electronic energy + Delta-G solvation = -21823.317147 eV Core-core repulsion = 18648.774362 eV Total energy + Delta-G solvation = -3174.542785 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.62779 -38.66409 -37.06419 -34.72402 -33.37834 -32.94219 -32.18707 -27.71318 -27.36058 -26.04926 -24.68761 -23.13036 -21.59371 -21.07593 -20.53469 -19.83830 -19.25730 -17.67403 -16.70387 -15.91569 -15.43464 -15.20472 -15.03674 -14.76547 -14.14897 -13.92939 -13.63121 -13.57777 -13.29330 -13.11975 -12.90421 -12.62334 -12.43505 -12.18758 -12.08787 -11.55435 -11.52035 -11.33725 -11.08362 -10.89172 -10.67025 -10.53277 -10.21294 -10.19231 -10.12974 -9.76205 -9.53969 -9.14449 -8.83700 -8.69595 -8.57308 -8.07184 -6.18425 -4.21581 3.10850 3.31508 3.39411 3.44301 3.56238 3.74895 4.29166 4.38688 4.57634 4.59749 4.72172 4.83564 5.00302 5.05577 5.07001 5.17881 5.19609 5.34954 5.41782 5.54454 5.61805 5.65010 5.67217 5.71842 5.80818 5.81774 5.92507 5.99077 6.02375 6.08910 6.16222 6.18119 6.28591 6.46893 6.51060 6.72323 6.79481 6.94004 7.10606 7.24691 7.48870 7.67837 8.40482 8.61199 8.82841 9.13926 9.45390 10.92461 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.022577 B = 0.003478 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.904246 B = 8048.204408 C = 8564.057760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.066 4.066 3 C -0.144 4.144 4 C -0.136 4.136 5 H 0.106 0.894 6 C -0.172 4.172 7 C -0.161 4.161 8 H 0.111 0.889 9 C 0.173 3.827 10 N -0.750 5.750 11 C 0.700 3.300 12 O -0.608 6.608 13 N -0.718 5.718 14 C 0.170 3.830 15 C -0.018 4.018 16 C -0.490 4.490 17 H 0.078 0.922 18 C 0.084 3.916 19 N -0.893 5.893 20 Si 0.873 3.127 21 H -0.276 1.276 22 H -0.294 1.294 23 H -0.255 1.255 24 C -0.179 4.179 25 C -0.186 4.186 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.397 0.603 38 H 0.404 0.596 39 H 0.051 0.949 40 H 0.049 0.951 41 H 0.266 0.734 42 H 0.085 0.915 43 H 0.073 0.927 44 H 0.071 0.929 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.322 14.346 -6.275 19.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.084 4.084 3 C -0.202 4.202 4 C -0.155 4.155 5 H 0.124 0.876 6 C -0.209 4.209 7 C -0.180 4.180 8 H 0.129 0.871 9 C 0.049 3.951 10 N -0.407 5.407 11 C 0.399 3.601 12 O -0.488 6.488 13 N -0.372 5.372 14 C 0.046 3.954 15 C -0.019 4.019 16 C -0.527 4.527 17 H 0.096 0.904 18 C -0.119 4.119 19 N -0.530 5.530 20 Si 0.702 3.298 21 H -0.202 1.202 22 H -0.222 1.222 23 H -0.179 1.179 24 C -0.216 4.216 25 C -0.224 4.224 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.114 0.886 34 H 0.112 0.888 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.230 0.770 38 H 0.239 0.761 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.076 0.924 42 H 0.104 0.896 43 H 0.091 0.909 44 H 0.089 0.911 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 11.160 14.876 -5.327 19.345 hybrid contribution -0.523 0.022 -0.003 0.523 sum 10.638 14.898 -5.330 19.066 Atomic orbital electron populations 1.21833 0.94792 1.02188 1.01664 1.20709 0.95838 0.95889 0.96012 1.21808 1.00995 0.95621 1.01747 1.22470 1.02964 0.90220 0.99854 0.87589 1.23232 0.92173 1.02775 1.02684 1.22555 0.98826 0.98619 0.97952 0.87118 1.20599 0.99128 0.81758 0.93652 1.45043 1.73031 1.14791 1.07789 1.16009 0.78176 0.82022 0.83870 1.90857 1.61040 1.67269 1.29624 1.44989 1.70395 1.08584 1.13191 1.20934 0.97654 0.92424 0.84389 1.19595 0.97387 0.87218 0.97746 1.20233 0.89941 1.40530 1.02002 0.90406 1.24900 0.96307 0.94652 0.96065 1.69886 1.01720 1.45671 1.35705 0.87008 0.77347 0.80604 0.84884 1.20230 1.22152 1.17883 1.22790 0.92488 1.03360 1.02989 1.23026 1.02664 1.03720 0.93026 0.92844 0.92361 0.92504 0.91233 0.92641 0.92725 0.92595 0.88635 0.88751 0.91568 0.91962 0.76959 0.76089 0.93110 0.93274 0.92437 0.89649 0.90882 0.91080 0.89220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.03 37.15 0.34 -0.86 16 2 C -0.07 -0.50 3.07 -90.62 -0.28 -0.78 16 3 C -0.14 -0.97 9.18 37.16 0.34 -0.63 16 4 C -0.14 -1.15 4.87 -90.62 -0.44 -1.59 16 5 H 0.11 0.91 8.11 -51.93 -0.42 0.49 16 6 C -0.17 -1.44 9.82 -26.73 -0.26 -1.70 16 7 C -0.16 -1.55 5.05 -90.62 -0.46 -2.01 16 8 H 0.11 1.04 7.50 -51.93 -0.39 0.65 16 9 C 0.17 2.22 5.96 -4.04 -0.02 2.20 16 10 N -0.75 -11.13 5.56 -65.23 -0.36 -11.49 16 11 C 0.70 13.70 8.55 -86.92 -0.74 12.96 16 12 O -0.61 -14.08 16.33 5.29 0.09 -13.99 16 13 N -0.72 -14.31 5.44 -65.22 -0.35 -14.66 16 14 C 0.17 3.75 5.09 -4.04 -0.02 3.73 16 15 C -0.02 -0.41 0.94 -155.66 -0.15 -0.55 16 16 C -0.49 -12.83 8.86 -34.44 -0.31 -13.14 16 17 H 0.08 2.19 8.06 -52.48 -0.42 1.77 16 18 C 0.08 2.33 5.47 -17.82 -0.10 2.23 16 19 N -0.89 -26.23 13.96 55.43 0.77 -25.45 16 20 Si 0.87 21.77 24.61 -169.99 -4.18 17.59 16 21 H -0.28 -7.06 6.94 56.52 0.39 -6.67 16 22 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 23 H -0.25 -6.05 6.28 56.52 0.36 -5.69 16 24 C -0.18 -3.49 9.94 -26.70 -0.27 -3.76 16 25 C -0.19 -3.85 8.79 -26.69 -0.23 -4.09 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.51 7.29 -51.93 -0.38 0.13 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.52 7.90 -51.93 -0.41 0.11 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.10 0.80 8.03 -51.93 -0.42 0.38 16 34 H 0.09 0.71 8.05 -51.93 -0.42 0.29 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.06 0.82 7.87 -51.93 -0.41 0.41 16 37 H 0.40 4.94 8.43 -40.82 -0.34 4.60 16 38 H 0.40 7.50 8.12 -40.82 -0.33 7.17 16 39 H 0.05 1.23 4.29 -51.93 -0.22 1.01 16 40 H 0.05 1.05 8.07 -51.92 -0.42 0.63 16 41 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 42 H 0.08 1.65 8.14 -51.93 -0.42 1.22 16 43 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 44 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 45 H 0.09 1.90 8.14 -51.93 -0.42 1.48 16 LS Contribution 362.33 15.07 5.46 5.46 Total: -1.00 -31.10 362.33 -9.19 -40.29 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: -8.00 Total: 10.26 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: -2.60 Total: -7.99 kcal Atomic # 7 Polarization: -51.66 SS G_CDS: 0.06 Total: -51.60 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: 0.09 Total: -13.99 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.18 Total: 17.59 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.10 -9.19 -40.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454880675.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.821 kcal (2) G-P(sol) polarization free energy of solvation -31.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds