Wall clock time and date at job start Tue Mar 31 2020 01:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52998 * 109.47286 * 2 1 4 4 C 1.53003 * 109.47092 * 119.99869 * 2 1 3 5 5 H 1.09004 * 115.56397 * 274.31730 * 4 2 1 6 6 C 1.52992 * 117.50364 * 128.62333 * 4 2 1 7 7 C 1.53002 * 60.00344 * 252.51118 * 6 4 2 8 8 H 1.09000 * 117.49788 * 107.51076 * 7 6 4 9 9 C 1.52999 * 117.49758 * 252.51130 * 7 6 4 10 10 N 1.46497 * 109.46968 * 243.60449 * 9 7 6 11 11 C 1.34779 * 120.00221 * 179.97438 * 10 9 7 12 12 O 1.21585 * 119.99537 * 4.94810 * 11 10 9 13 13 N 1.34773 * 119.99952 * 184.94037 * 11 10 9 14 14 C 1.46501 * 119.99816 * 184.95569 * 13 11 10 15 15 C 1.52997 * 109.47306 * 184.69563 * 14 13 11 16 16 C 1.50699 * 115.54832 * 301.50092 * 15 14 13 17 17 H 1.08004 * 120.00542 * 114.70851 * 16 15 14 18 18 C 1.37884 * 119.99886 * 294.70452 * 16 15 14 19 19 N 1.31512 * 119.99768 * 184.42583 * 18 16 15 20 20 Si 1.86796 * 119.99830 * 4.42728 * 18 16 15 21 21 H 1.48494 * 109.47286 * 85.05044 * 20 18 16 22 22 H 1.48500 * 109.46994 * 205.04836 * 20 18 16 23 23 H 1.48501 * 109.47195 * 325.04744 * 20 18 16 24 24 C 1.52999 * 117.50163 * 87.16592 * 15 14 13 25 25 C 1.53000 * 117.50492 * 155.82742 * 15 14 13 26 26 H 1.08999 * 109.47148 * 60.00570 * 1 2 3 27 27 H 1.09007 * 109.47060 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47413 * 300.00281 * 1 2 3 29 29 H 1.08998 * 109.47413 * 239.99719 * 2 1 3 30 30 H 1.09003 * 109.47336 * 179.97438 * 3 2 1 31 31 H 1.08999 * 109.47265 * 300.00043 * 3 2 1 32 32 H 1.09006 * 109.47202 * 59.99871 * 3 2 1 33 33 H 1.09003 * 117.50390 * 145.02132 * 6 4 2 34 34 H 1.09004 * 117.51917 * 359.97438 * 6 4 2 35 35 H 1.08998 * 109.47082 * 123.60333 * 9 7 6 36 36 H 1.08996 * 109.47059 * 3.60169 * 9 7 6 37 37 H 0.97006 * 120.00361 * 359.97438 * 10 9 7 38 38 H 0.96998 * 120.00672 * 4.96437 * 13 11 10 39 39 H 1.08997 * 109.47307 * 64.69518 * 14 13 11 40 40 H 1.09009 * 109.46867 * 304.69182 * 14 13 11 41 41 H 0.97005 * 119.99599 * 180.02562 * 19 18 16 42 42 H 1.09004 * 117.50138 * 215.00391 * 24 15 14 43 43 H 1.08998 * 117.49900 * 0.02800 * 24 15 14 44 44 H 1.09007 * 117.49197 * 359.97438 * 25 15 14 45 45 H 1.08994 * 117.50036 * 144.98801 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 2.1269 -0.1061 2.1450 6 6 3.0740 -1.8313 1.0516 7 6 1.6356 -2.1852 1.4344 8 1 1.0065 -2.6349 0.6662 9 6 1.3844 -2.6736 2.8624 10 7 0.8957 -4.0542 2.8275 11 6 0.6058 -4.6958 3.9767 12 8 0.6634 -4.1015 5.0359 13 7 0.2519 -5.9960 3.9519 14 6 -0.1680 -6.6646 5.1859 15 6 -0.4002 -8.1509 4.9072 16 6 -1.4295 -8.4610 3.8511 17 1 -1.1307 -8.9377 2.9291 18 6 -2.7529 -8.1363 4.0618 19 7 -3.6639 -8.4846 3.1795 20 14 -3.2517 -7.2019 5.6004 21 1 -3.0794 -5.7447 5.3722 22 1 -4.6744 -7.4889 5.9144 23 1 -2.3978 -7.6292 6.7377 24 6 0.8054 -9.0868 5.0149 25 6 -0.2860 -9.1175 6.0877 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 3.8415 -1.9465 1.8170 34 1 3.3910 -2.0484 0.0315 35 1 0.6393 -2.0363 3.3386 36 1 2.3143 -2.6316 3.4296 37 1 0.7807 -4.5067 1.9771 38 1 0.2753 -6.4892 3.1170 39 1 -1.0924 -6.2139 5.5469 40 1 0.6097 -6.5539 5.9418 41 1 -4.5948 -8.2558 3.3276 42 1 0.8541 -9.9268 4.3219 43 1 1.7640 -8.6436 5.2848 44 1 -0.0450 -8.6945 7.0629 45 1 -0.9555 -9.9776 6.1005 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000454880675.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:36:52 Heat of formation + Delta-G solvation = -20.173376 kcal Electronic energy + Delta-G solvation = -21824.171781 eV Core-core repulsion = 18648.774362 eV Total energy + Delta-G solvation = -3175.397420 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.06557 -39.55626 -38.72467 -35.81012 -34.98432 -34.28128 -33.88989 -29.10142 -28.02570 -27.72995 -26.32225 -23.77835 -23.20821 -22.01667 -21.82196 -21.13876 -20.60500 -19.19542 -18.41823 -17.30889 -17.15577 -16.47881 -16.10231 -15.94919 -15.57793 -15.11829 -14.97379 -14.90648 -14.63563 -14.43841 -14.03709 -13.94938 -13.85391 -13.30170 -13.06067 -12.98595 -12.61830 -12.36438 -12.15315 -12.13558 -12.05203 -11.98112 -11.59134 -11.52298 -11.42019 -10.93891 -10.93683 -10.78031 -10.73406 -10.40473 -10.21894 -9.61242 -8.32472 -6.35899 1.31212 1.36953 1.44790 1.76823 2.16926 2.32364 2.80721 2.97760 3.24761 3.48437 3.61354 3.86338 3.98458 4.03240 4.15743 4.23701 4.31273 4.38491 4.46422 4.47549 4.54622 4.67523 4.71456 4.77743 4.80269 4.84729 4.92667 4.96476 5.01431 5.06463 5.07487 5.21076 5.24994 5.25602 5.31457 5.45074 5.51299 5.53902 5.56193 5.64201 5.69653 6.09956 6.29499 6.71216 7.16807 7.33045 7.61246 8.81743 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.022577 B = 0.003478 C = 0.003269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.904246 B = 8048.204408 C = 8564.057760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.064 4.064 3 C -0.143 4.143 4 C -0.131 4.131 5 H 0.104 0.896 6 C -0.160 4.160 7 C -0.167 4.167 8 H 0.116 0.884 9 C 0.174 3.826 10 N -0.733 5.733 11 C 0.695 3.305 12 O -0.645 6.645 13 N -0.718 5.718 14 C 0.177 3.823 15 C -0.043 4.043 16 C -0.474 4.474 17 H 0.049 0.951 18 C 0.039 3.961 19 N -0.938 5.938 20 Si 0.920 3.080 21 H -0.290 1.290 22 H -0.298 1.298 23 H -0.234 1.234 24 C -0.153 4.153 25 C -0.183 4.183 26 H 0.061 0.939 27 H 0.049 0.951 28 H 0.049 0.951 29 H 0.075 0.925 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.052 0.948 33 H 0.096 0.904 34 H 0.108 0.892 35 H 0.050 0.950 36 H 0.059 0.941 37 H 0.410 0.590 38 H 0.409 0.591 39 H 0.027 0.973 40 H 0.059 0.941 41 H 0.265 0.735 42 H 0.086 0.914 43 H 0.099 0.901 44 H 0.092 0.908 45 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.170 14.975 -6.260 20.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.082 4.082 3 C -0.200 4.200 4 C -0.150 4.150 5 H 0.122 0.878 6 C -0.197 4.197 7 C -0.186 4.186 8 H 0.134 0.866 9 C 0.050 3.950 10 N -0.390 5.390 11 C 0.395 3.605 12 O -0.528 6.528 13 N -0.372 5.372 14 C 0.052 3.948 15 C -0.044 4.044 16 C -0.512 4.512 17 H 0.067 0.933 18 C -0.160 4.160 19 N -0.577 5.577 20 Si 0.748 3.252 21 H -0.217 1.217 22 H -0.225 1.225 23 H -0.157 1.157 24 C -0.190 4.190 25 C -0.221 4.221 26 H 0.080 0.920 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.094 0.906 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.115 0.885 34 H 0.126 0.874 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.246 0.754 38 H 0.245 0.755 39 H 0.045 0.955 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.105 0.895 43 H 0.117 0.883 44 H 0.110 0.890 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 13.038 15.502 -5.343 20.948 hybrid contribution -1.029 -0.171 -0.071 1.046 sum 12.008 15.331 -5.414 20.213 Atomic orbital electron populations 1.21838 0.95309 1.01634 1.01773 1.20715 0.95352 0.96464 0.95699 1.21793 1.01289 0.94937 1.01996 1.22529 1.02626 0.89625 1.00229 0.87813 1.23294 0.91266 1.01728 1.03427 1.22404 1.00382 0.99849 0.95950 0.86638 1.20675 0.98274 0.80237 0.95784 1.44983 1.71591 1.15337 1.07043 1.16195 0.78021 0.81823 0.84463 1.90825 1.62695 1.67932 1.31340 1.44915 1.70453 1.08901 1.12931 1.20752 0.96881 0.91779 0.85396 1.19453 0.98673 0.88066 0.98251 1.20368 0.90575 1.38451 1.01812 0.93263 1.25481 0.96664 0.95723 0.98132 1.69990 1.02037 1.48019 1.37674 0.86248 0.77072 0.78662 0.83206 1.21677 1.22520 1.15687 1.22837 0.92587 1.01874 1.01707 1.23076 1.02922 1.02479 0.93666 0.92012 0.93229 0.93162 0.90624 0.92158 0.92031 0.92847 0.88519 0.87395 0.93173 0.92253 0.75421 0.75456 0.95537 0.92249 0.92596 0.89513 0.88273 0.88958 0.89961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 9.03 71.98 0.65 -1.58 16 2 C -0.06 -0.86 3.07 -10.80 -0.03 -0.89 16 3 C -0.14 -1.66 9.18 71.98 0.66 -1.00 16 4 C -0.13 -2.01 4.87 -10.79 -0.05 -2.06 16 5 H 0.10 1.65 8.11 -2.38 -0.02 1.63 16 6 C -0.16 -2.32 9.82 30.59 0.30 -2.02 16 7 C -0.17 -2.98 5.05 -10.79 -0.05 -3.04 16 8 H 0.12 1.98 7.50 -2.39 -0.02 1.96 16 9 C 0.17 4.34 5.96 86.38 0.51 4.86 16 10 N -0.73 -21.11 5.56 -478.55 -2.66 -23.77 16 11 C 0.70 26.76 8.55 179.05 1.53 28.29 16 12 O -0.64 -29.65 16.33 -3.98 -0.07 -29.71 16 13 N -0.72 -27.93 5.44 -478.54 -2.60 -30.53 16 14 C 0.18 7.54 5.09 86.38 0.44 7.98 16 15 C -0.04 -1.86 0.94 -52.93 -0.05 -1.91 16 16 C -0.47 -24.81 8.86 25.60 0.23 -24.58 16 17 H 0.05 2.81 8.06 -2.91 -0.02 2.79 16 18 C 0.04 2.17 5.47 84.66 0.46 2.64 16 19 N -0.94 -56.13 13.96 21.45 0.30 -55.83 16 20 Si 0.92 45.08 24.61 68.60 1.69 46.77 16 21 H -0.29 -14.73 6.94 99.48 0.69 -14.04 16 22 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 23 H -0.23 -10.52 6.28 99.48 0.62 -9.90 16 24 C -0.15 -5.51 9.94 30.62 0.30 -5.20 16 25 C -0.18 -7.08 8.79 30.62 0.27 -6.81 16 26 H 0.06 0.81 8.14 -2.39 -0.02 0.80 16 27 H 0.05 0.82 7.29 -2.38 -0.02 0.81 16 28 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.08 0.95 7.90 -2.39 -0.02 0.93 16 30 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.05 0.64 8.14 -2.38 -0.02 0.63 16 33 H 0.10 1.41 8.03 -2.39 -0.02 1.39 16 34 H 0.11 1.31 8.05 -2.38 -0.02 1.29 16 35 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.06 1.53 7.87 -2.39 -0.02 1.51 16 37 H 0.41 9.69 8.43 -92.70 -0.78 8.91 16 38 H 0.41 14.85 8.12 -92.71 -0.75 14.10 16 39 H 0.03 1.27 4.29 -2.39 -0.01 1.26 16 40 H 0.06 2.41 8.07 -2.38 -0.02 2.39 16 41 H 0.26 15.14 8.31 -92.70 -0.77 14.37 16 42 H 0.09 3.11 8.14 -2.38 -0.02 3.09 16 43 H 0.10 3.09 8.14 -2.39 -0.02 3.07 16 44 H 0.09 3.19 8.14 -2.38 -0.02 3.17 16 45 H 0.08 3.30 8.14 -2.39 -0.02 3.28 16 Total: -1.00 -66.60 362.33 1.17 -65.43 By element: Atomic # 1 Polarization: 33.65 SS G_CDS: -0.66 Total: 32.98 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: 5.17 Total: -5.34 kcal Atomic # 7 Polarization: -105.16 SS G_CDS: -4.96 Total: -110.13 kcal Atomic # 8 Polarization: -29.65 SS G_CDS: -0.07 Total: -29.71 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.69 Total: 46.77 kcal Total: -66.60 1.17 -65.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454880675.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.254 kcal (2) G-P(sol) polarization free energy of solvation -66.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds