Wall clock time and date at job start Tue Mar 31 2020 02:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.50699 * 109.47265 * 239.99899 * 2 1 3 5 5 H 1.08003 * 119.99962 * 239.99845 * 4 2 1 6 6 C 1.37874 * 120.00270 * 60.00237 * 4 2 1 7 7 N 1.31522 * 119.99834 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 120.00496 * 180.02562 * 6 4 2 9 9 H 1.48508 * 109.47141 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47494 * 119.99680 * 8 6 4 11 11 H 1.48505 * 109.47047 * 239.99860 * 8 6 4 12 12 C 1.53006 * 109.47164 * 120.00099 * 2 1 3 13 13 N 1.46500 * 109.46998 * 300.00051 * 12 2 1 14 14 C 1.34769 * 120.00241 * 180.02562 * 13 12 2 15 15 O 1.21282 * 119.99850 * 359.97438 * 14 13 12 16 16 C 1.50702 * 120.00466 * 179.97438 * 14 13 12 17 17 H 1.09003 * 109.90565 * 300.35342 * 16 14 13 18 18 C 1.53998 * 109.91295 * 61.44990 * 16 14 13 19 19 C 1.54601 * 105.13796 * 120.58262 * 18 16 14 20 20 C 1.54935 * 102.92307 * 21.95534 * 19 18 16 21 21 N 1.47895 * 109.92226 * 179.03809 * 16 14 13 22 22 C 1.46900 * 110.99601 * 94.80170 * 21 16 14 23 23 C 1.53004 * 117.49964 * 243.74639 * 22 21 16 24 24 C 1.53002 * 117.49963 * 175.08831 * 22 21 16 25 25 H 1.09001 * 109.47375 * 299.99867 * 1 2 3 26 26 H 1.09002 * 109.46777 * 60.00422 * 1 2 3 27 27 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47153 * 299.99992 * 3 2 1 30 30 H 1.09001 * 109.47289 * 60.00075 * 3 2 1 31 31 H 0.96992 * 120.00032 * 180.02562 * 7 6 4 32 32 H 1.09000 * 109.47050 * 59.99996 * 12 2 1 33 33 H 1.09001 * 109.46801 * 180.02562 * 12 2 1 34 34 H 0.97010 * 119.99910 * 359.97438 * 13 12 2 35 35 H 1.09004 * 110.30533 * 239.49150 * 18 16 14 36 36 H 1.08998 * 110.31497 * 1.66483 * 18 16 14 37 37 H 1.08999 * 110.72394 * 140.30934 * 19 18 16 38 38 H 1.09000 * 110.71788 * 263.41736 * 19 18 16 39 39 H 1.08998 * 110.66818 * 81.01980 * 20 19 18 40 40 H 1.08991 * 110.66971 * 203.98629 * 20 19 18 41 41 H 1.08999 * 115.55228 * 29.41816 * 22 21 16 42 42 H 1.08997 * 117.49807 * 0.02562 * 23 22 21 43 43 H 1.09007 * 117.49937 * 145.02146 * 23 22 21 44 44 H 1.08997 * 117.50266 * 214.98053 * 24 22 21 45 45 H 1.09005 * 117.49444 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 3.1465 -2.2871 -3.6037 10 1 1.1662 -1.5867 -4.8161 11 1 3.1467 -0.1873 -4.8164 12 6 2.0400 -0.7213 1.2493 13 7 1.5516 -0.0307 2.4454 14 6 1.8776 -0.4908 3.6695 15 8 2.5749 -1.4769 3.7808 16 6 1.3758 0.2199 4.9000 17 1 1.7301 1.2508 4.9037 18 6 -0.1637 0.1943 4.9293 19 6 -0.5304 -0.5338 6.2430 20 6 0.7449 -0.3570 7.1048 21 7 1.8445 -0.4826 6.1141 22 6 3.0841 0.1184 6.6244 23 6 4.3425 -0.7518 6.6261 24 6 3.6390 -0.4204 7.9446 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 0.7083 1.1608 -3.4844 32 1 1.6767 -1.7490 1.2492 33 1 3.1300 -0.7209 1.2494 34 1 0.9942 0.7583 2.3564 35 1 -0.5589 1.2101 4.9368 36 1 -0.5494 -0.3563 4.0713 37 1 -1.3875 -0.0591 6.7207 38 1 -0.7300 -1.5890 6.0563 39 1 0.7595 0.6272 7.5729 40 1 0.8115 -1.1412 7.8587 41 1 3.2082 1.1824 6.4232 42 1 4.2508 -1.7701 6.2482 43 1 5.2947 -0.2602 6.4263 44 1 4.1286 0.2891 8.6116 45 1 3.0841 -1.2204 8.4346 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458013618.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:03 Heat of formation + Delta-G solvation = -8.905021 kcal Electronic energy + Delta-G solvation = -22873.635795 eV Core-core repulsion = 19698.727008 eV Total energy + Delta-G solvation = -3174.908787 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.04406 -38.19121 -36.25827 -35.86358 -33.18276 -30.97607 -30.30791 -29.30175 -25.71005 -25.58919 -24.88991 -22.90492 -22.44006 -21.39930 -20.53404 -19.62192 -18.74107 -17.22941 -16.56575 -15.87776 -15.44244 -14.96540 -14.72262 -14.44774 -14.24287 -13.61917 -13.57020 -13.00772 -12.88773 -12.71639 -12.60748 -12.15243 -12.00703 -11.55872 -11.53694 -11.30471 -11.24027 -11.17742 -10.88968 -10.82864 -10.64504 -10.43811 -10.35654 -10.18572 -10.17515 -9.61011 -9.42391 -9.16138 -8.76045 -8.41210 -8.35645 -8.21591 -6.00757 -4.10459 3.19341 3.28108 3.36563 3.39959 3.44741 3.73745 4.09999 4.41981 4.49789 4.64101 4.79727 4.89344 4.99795 5.10995 5.22738 5.26087 5.26711 5.40183 5.52168 5.56369 5.66794 5.68466 5.74354 5.92774 6.00829 6.05647 6.26422 6.28526 6.37924 6.53415 6.72020 6.83526 6.84285 6.97134 7.02817 7.04543 7.12848 7.38955 7.57516 7.71285 8.02800 8.12529 8.24331 8.41280 8.86373 8.92569 9.55336 11.00656 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.029578 B = 0.003833 C = 0.003593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.425911 B = 7303.999907 C = 7790.752939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.055 3.945 3 C -0.130 4.130 4 C -0.504 4.504 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.892 3.108 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.285 1.285 12 C 0.135 3.865 13 N -0.722 5.722 14 C 0.513 3.487 15 O -0.527 6.527 16 C 0.051 3.949 17 H 0.075 0.925 18 C -0.125 4.125 19 C -0.122 4.122 20 C 0.040 3.960 21 N -0.464 5.464 22 C -0.002 4.002 23 C -0.151 4.151 24 C -0.177 4.177 25 H 0.006 0.994 26 H 0.085 0.915 27 H 0.026 0.974 28 H 0.026 0.974 29 H 0.085 0.915 30 H 0.005 0.995 31 H 0.259 0.741 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.395 0.605 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.046 0.954 40 H 0.082 0.918 41 H 0.088 0.912 42 H 0.106 0.894 43 H 0.091 0.909 44 H 0.092 0.908 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.727 2.610 18.190 18.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.054 3.946 3 C -0.187 4.187 4 C -0.542 4.542 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.525 5.525 8 Si 0.720 3.280 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.013 3.987 13 N -0.374 5.374 14 C 0.296 3.704 15 O -0.403 6.403 16 C -0.061 4.061 17 H 0.092 0.908 18 C -0.164 4.164 19 C -0.160 4.160 20 C -0.087 4.087 21 N -0.188 5.188 22 C -0.112 4.112 23 C -0.189 4.189 24 C -0.215 4.215 25 H 0.025 0.975 26 H 0.103 0.897 27 H 0.045 0.955 28 H 0.045 0.955 29 H 0.103 0.897 30 H 0.024 0.976 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.229 0.771 35 H 0.095 0.905 36 H 0.100 0.900 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.064 0.936 40 H 0.101 0.899 41 H 0.105 0.895 42 H 0.124 0.876 43 H 0.109 0.891 44 H 0.110 0.890 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.164 1.445 17.996 18.091 hybrid contribution -0.052 0.896 -0.818 1.215 sum -1.216 2.342 17.178 17.379 Atomic orbital electron populations 1.21814 0.97771 0.99126 1.00001 1.18360 0.92795 0.92731 0.90665 1.21818 0.98527 0.98400 0.99986 1.21039 1.31276 1.12024 0.89910 0.92414 1.24880 0.94894 0.94935 0.98841 1.69816 1.36801 1.22849 1.23055 0.86527 0.78637 0.79775 0.83018 1.19753 1.21074 1.21091 1.21652 0.97965 0.95697 0.83411 1.46288 1.53255 1.31939 1.05895 1.20199 0.80976 0.85098 0.84100 1.90645 1.37258 1.25823 1.86552 1.22369 0.95883 0.96623 0.91262 0.90769 1.22437 0.92659 1.01674 0.99600 1.22482 0.96978 1.01642 0.94944 1.23182 0.90104 1.00421 0.95031 1.64153 1.01560 1.50796 1.02288 1.22577 0.91836 0.95580 1.01159 1.23017 0.94800 1.02154 0.98930 1.23053 1.04257 1.03554 0.90603 0.97525 0.89667 0.95486 0.95517 0.89655 0.97567 0.93115 0.92902 0.92971 0.77052 0.90493 0.89981 0.90728 0.90465 0.93595 0.89918 0.89457 0.87554 0.89097 0.88973 0.88551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 2 C 0.06 1.28 0.50 -155.66 -0.08 1.21 16 3 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 4 C -0.50 -13.29 8.01 -34.44 -0.28 -13.56 16 5 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 6 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 7 N -0.89 -23.64 9.35 55.43 0.52 -23.12 16 8 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 9 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 12 C 0.14 2.92 4.50 -4.04 -0.02 2.91 16 13 N -0.72 -13.02 4.82 -60.29 -0.29 -13.31 16 14 C 0.51 9.18 6.99 -10.99 -0.08 9.10 16 15 O -0.53 -11.48 16.46 5.56 0.09 -11.39 16 16 C 0.05 0.69 2.87 -67.79 -0.19 0.50 16 17 H 0.07 0.92 7.47 -51.93 -0.39 0.53 16 18 C -0.13 -1.40 6.47 -25.37 -0.16 -1.57 16 19 C -0.12 -1.21 7.06 -24.87 -0.18 -1.38 16 20 C 0.04 0.41 6.03 -1.90 -0.01 0.40 16 21 N -0.46 -6.22 4.58 -216.04 -0.99 -7.21 16 22 C 0.00 -0.03 5.24 -67.71 -0.35 -0.38 16 23 C -0.15 -1.88 10.46 -26.69 -0.28 -2.16 16 24 C -0.18 -1.78 9.90 -26.69 -0.26 -2.05 16 25 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 26 H 0.08 2.12 6.07 -51.93 -0.32 1.81 16 27 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.08 2.13 6.07 -51.93 -0.32 1.81 16 30 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 31 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 32 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.39 6.42 6.13 -40.82 -0.25 6.17 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.08 1.03 7.63 -51.93 -0.40 0.63 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.05 0.42 8.02 -51.93 -0.42 0.00 16 40 H 0.08 0.80 7.95 -51.93 -0.41 0.38 16 41 H 0.09 1.00 7.64 -51.93 -0.40 0.61 16 42 H 0.11 1.56 8.14 -51.93 -0.42 1.14 16 43 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.10 0.95 7.89 -51.93 -0.41 0.55 16 LS Contribution 351.48 15.07 5.30 5.30 Total: -1.00 -29.13 351.48 -9.56 -38.69 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -7.78 Total: 5.84 kcal Atomic # 6 Polarization: -9.22 SS G_CDS: -1.39 Total: -10.60 kcal Atomic # 7 Polarization: -42.88 SS G_CDS: -0.76 Total: -43.64 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: 0.09 Total: -11.39 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.13 -9.56 -38.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458013618.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.786 kcal (2) G-P(sol) polarization free energy of solvation -29.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds