Wall clock time and date at job start Tue Mar 31 2020 02:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.50699 * 109.47265 * 239.99899 * 2 1 3 5 5 H 1.08003 * 119.99962 * 239.99845 * 4 2 1 6 6 C 1.37874 * 120.00270 * 60.00237 * 4 2 1 7 7 N 1.31522 * 119.99834 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 120.00496 * 180.02562 * 6 4 2 9 9 H 1.48508 * 109.47141 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47494 * 119.99680 * 8 6 4 11 11 H 1.48505 * 109.47047 * 239.99860 * 8 6 4 12 12 C 1.53006 * 109.47164 * 120.00099 * 2 1 3 13 13 N 1.46500 * 109.46998 * 300.00051 * 12 2 1 14 14 C 1.34769 * 120.00241 * 180.02562 * 13 12 2 15 15 O 1.21282 * 119.99850 * 359.97438 * 14 13 12 16 16 C 1.50702 * 120.00466 * 179.97438 * 14 13 12 17 17 H 1.09003 * 109.90565 * 300.35342 * 16 14 13 18 18 C 1.53998 * 109.91295 * 61.44990 * 16 14 13 19 19 C 1.54601 * 105.13796 * 120.58262 * 18 16 14 20 20 C 1.54935 * 102.92307 * 21.95534 * 19 18 16 21 21 N 1.47895 * 109.92226 * 179.03809 * 16 14 13 22 22 C 1.46900 * 110.99601 * 94.80170 * 21 16 14 23 23 C 1.53004 * 117.49964 * 243.74639 * 22 21 16 24 24 C 1.53002 * 117.49963 * 175.08831 * 22 21 16 25 25 H 1.09001 * 109.47375 * 299.99867 * 1 2 3 26 26 H 1.09002 * 109.46777 * 60.00422 * 1 2 3 27 27 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47153 * 299.99992 * 3 2 1 30 30 H 1.09001 * 109.47289 * 60.00075 * 3 2 1 31 31 H 0.96992 * 120.00032 * 180.02562 * 7 6 4 32 32 H 1.09000 * 109.47050 * 59.99996 * 12 2 1 33 33 H 1.09001 * 109.46801 * 180.02562 * 12 2 1 34 34 H 0.97010 * 119.99910 * 359.97438 * 13 12 2 35 35 H 1.09004 * 110.30533 * 239.49150 * 18 16 14 36 36 H 1.08998 * 110.31497 * 1.66483 * 18 16 14 37 37 H 1.08999 * 110.72394 * 140.30934 * 19 18 16 38 38 H 1.09000 * 110.71788 * 263.41736 * 19 18 16 39 39 H 1.08998 * 110.66818 * 81.01980 * 20 19 18 40 40 H 1.08991 * 110.66971 * 203.98629 * 20 19 18 41 41 H 1.08999 * 115.55228 * 29.41816 * 22 21 16 42 42 H 1.08997 * 117.49807 * 0.02562 * 23 22 21 43 43 H 1.09007 * 117.49937 * 145.02146 * 23 22 21 44 44 H 1.08997 * 117.50266 * 214.98053 * 24 22 21 45 45 H 1.09005 * 117.49444 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 3.1465 -2.2871 -3.6037 10 1 1.1662 -1.5867 -4.8161 11 1 3.1467 -0.1873 -4.8164 12 6 2.0400 -0.7213 1.2493 13 7 1.5516 -0.0307 2.4454 14 6 1.8776 -0.4908 3.6695 15 8 2.5749 -1.4769 3.7808 16 6 1.3758 0.2199 4.9000 17 1 1.7301 1.2508 4.9037 18 6 -0.1637 0.1943 4.9293 19 6 -0.5304 -0.5338 6.2430 20 6 0.7449 -0.3570 7.1048 21 7 1.8445 -0.4826 6.1141 22 6 3.0841 0.1184 6.6244 23 6 4.3425 -0.7518 6.6261 24 6 3.6390 -0.4204 7.9446 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 0.7083 1.1608 -3.4844 32 1 1.6767 -1.7490 1.2492 33 1 3.1300 -0.7209 1.2494 34 1 0.9942 0.7583 2.3564 35 1 -0.5589 1.2101 4.9368 36 1 -0.5494 -0.3563 4.0713 37 1 -1.3875 -0.0591 6.7207 38 1 -0.7300 -1.5890 6.0563 39 1 0.7595 0.6272 7.5729 40 1 0.8115 -1.1412 7.8587 41 1 3.2082 1.1824 6.4232 42 1 4.2508 -1.7701 6.2482 43 1 5.2947 -0.2602 6.4263 44 1 4.1286 0.2891 8.6116 45 1 3.0841 -1.2204 8.4346 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458013618.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:02 Heat of formation + Delta-G solvation = -26.693785 kcal Electronic energy + Delta-G solvation = -22874.407174 eV Core-core repulsion = 19698.727008 eV Total energy + Delta-G solvation = -3175.680166 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.23819 -39.47029 -37.94730 -36.83465 -34.93303 -32.78697 -31.19082 -30.40670 -27.55994 -27.44131 -26.65155 -23.97358 -23.33612 -22.41588 -21.42739 -20.91750 -20.56187 -18.55883 -17.77439 -17.50496 -16.78006 -16.62314 -16.01465 -15.87947 -15.45933 -14.96672 -14.68186 -14.53577 -14.22133 -14.18929 -13.91177 -13.59787 -13.20976 -13.10043 -12.86931 -12.69578 -12.57905 -12.42970 -12.40309 -12.23177 -12.14249 -12.06866 -11.71990 -11.48046 -11.31595 -11.24190 -11.04524 -10.74100 -10.58742 -10.39793 -9.86760 -9.30881 -8.02603 -6.18112 1.40586 1.44748 1.54276 1.79966 2.21002 2.47296 2.85968 3.00305 3.20797 3.61545 3.68781 3.90957 4.03687 4.10691 4.17737 4.24718 4.36162 4.45627 4.51769 4.60377 4.62979 4.72158 4.78560 4.83794 4.89851 5.00494 5.01320 5.05927 5.06967 5.12351 5.15865 5.19959 5.25977 5.32390 5.39059 5.63952 5.67183 5.67655 5.85043 6.13419 6.15637 6.22074 6.44017 6.78617 6.85960 7.45514 7.49550 8.96396 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.029578 B = 0.003833 C = 0.003593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.425911 B = 7303.999907 C = 7790.752939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.051 3.949 3 C -0.119 4.119 4 C -0.529 4.529 5 H 0.041 0.959 6 C 0.029 3.971 7 N -0.898 5.898 8 Si 0.944 3.056 9 H -0.277 1.277 10 H -0.280 1.280 11 H -0.280 1.280 12 C 0.152 3.848 13 N -0.713 5.713 14 C 0.508 3.492 15 O -0.572 6.572 16 C 0.057 3.943 17 H 0.094 0.906 18 C -0.123 4.123 19 C -0.119 4.119 20 C 0.042 3.958 21 N -0.493 5.493 22 C -0.012 4.012 23 C -0.176 4.176 24 C -0.147 4.147 25 H 0.038 0.962 26 H 0.063 0.937 27 H 0.016 0.984 28 H 0.016 0.984 29 H 0.063 0.937 30 H 0.037 0.963 31 H 0.260 0.740 32 H 0.032 0.968 33 H 0.032 0.968 34 H 0.407 0.593 35 H 0.107 0.893 36 H 0.065 0.935 37 H 0.104 0.896 38 H 0.061 0.939 39 H 0.066 0.934 40 H 0.087 0.913 41 H 0.099 0.901 42 H 0.073 0.927 43 H 0.097 0.903 44 H 0.118 0.882 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.762 4.203 20.060 20.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.050 3.950 3 C -0.177 4.177 4 C -0.567 4.567 5 H 0.059 0.941 6 C -0.171 4.171 7 N -0.537 5.537 8 Si 0.771 3.229 9 H -0.202 1.202 10 H -0.206 1.206 11 H -0.206 1.206 12 C 0.028 3.972 13 N -0.366 5.366 14 C 0.295 3.705 15 O -0.451 6.451 16 C -0.055 4.055 17 H 0.112 0.888 18 C -0.161 4.161 19 C -0.157 4.157 20 C -0.084 4.084 21 N -0.218 5.218 22 C -0.121 4.121 23 C -0.214 4.214 24 C -0.184 4.184 25 H 0.057 0.943 26 H 0.081 0.919 27 H 0.035 0.965 28 H 0.035 0.965 29 H 0.082 0.918 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.051 0.949 33 H 0.050 0.950 34 H 0.243 0.757 35 H 0.126 0.874 36 H 0.083 0.917 37 H 0.122 0.878 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.105 0.895 41 H 0.116 0.884 42 H 0.092 0.908 43 H 0.116 0.884 44 H 0.136 0.864 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.223 3.062 19.882 20.239 hybrid contribution 0.297 0.356 -1.382 1.458 sum -1.926 3.418 18.500 18.911 Atomic orbital electron populations 1.21644 0.96932 0.98577 1.00445 1.18361 0.93387 0.93022 0.90194 1.21652 0.97781 0.97809 1.00409 1.21300 1.31649 1.12084 0.91707 0.94054 1.25431 0.95141 0.95603 1.00876 1.69908 1.36965 1.23269 1.23536 0.85722 0.78162 0.78718 0.80290 1.20210 1.20601 1.20630 1.21180 0.96598 0.94886 0.84504 1.46103 1.53316 1.32037 1.05133 1.21132 0.79769 0.84558 0.85075 1.90628 1.39229 1.28015 1.87205 1.22335 0.97493 0.96540 0.89130 0.88840 1.22490 0.90552 1.03441 0.99664 1.22501 0.97904 1.00891 0.94372 1.23249 0.88960 1.01700 0.94480 1.64028 1.02938 1.51704 1.03112 1.22704 0.91052 0.95800 1.02578 1.22959 0.95865 1.00766 1.01783 1.23101 1.02359 1.03327 0.89632 0.94280 0.91860 0.96489 0.96525 0.91834 0.94383 0.93009 0.94913 0.94972 0.75651 0.87434 0.91651 0.87769 0.92051 0.91563 0.89511 0.88387 0.90835 0.88426 0.86389 0.88382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.26 8.08 71.98 0.58 -4.67 16 2 C 0.05 2.39 0.50 -52.93 -0.03 2.36 16 3 C -0.12 -5.30 8.08 71.98 0.58 -4.72 16 4 C -0.53 -28.46 8.01 25.60 0.21 -28.25 16 5 H 0.04 2.30 7.74 -2.91 -0.02 2.27 16 6 C 0.03 1.55 5.15 84.65 0.44 1.99 16 7 N -0.90 -47.93 9.35 21.45 0.20 -47.73 16 8 Si 0.94 43.03 29.54 68.60 2.03 45.06 16 9 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 10 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 11 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 12 C 0.15 6.72 4.50 86.38 0.39 7.11 16 13 N -0.71 -25.26 4.82 -463.05 -2.23 -27.49 16 14 C 0.51 18.05 6.99 87.66 0.61 18.66 16 15 O -0.57 -25.62 16.46 -3.04 -0.05 -25.67 16 16 C 0.06 1.44 2.87 44.32 0.13 1.57 16 17 H 0.09 2.01 7.47 -2.39 -0.02 1.99 16 18 C -0.12 -2.39 6.47 31.48 0.20 -2.19 16 19 C -0.12 -1.98 7.06 31.80 0.22 -1.76 16 20 C 0.04 0.75 6.03 86.65 0.52 1.27 16 21 N -0.49 -12.41 4.58 -837.41 -3.83 -16.25 16 22 C -0.01 -0.28 5.24 44.92 0.24 -0.05 16 23 C -0.18 -4.35 10.46 30.62 0.32 -4.03 16 24 C -0.15 -2.63 9.90 30.62 0.30 -2.32 16 25 H 0.04 1.43 6.86 -2.39 -0.02 1.42 16 26 H 0.06 3.12 6.07 -2.39 -0.01 3.11 16 27 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.02 0.73 8.14 -2.38 -0.02 0.71 16 29 H 0.06 3.14 6.07 -2.39 -0.01 3.13 16 30 H 0.04 1.41 6.86 -2.39 -0.02 1.39 16 31 H 0.26 13.33 8.31 -92.71 -0.77 12.56 16 32 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.41 12.36 6.13 -92.70 -0.57 11.79 16 35 H 0.11 1.46 8.14 -2.38 -0.02 1.44 16 36 H 0.06 1.50 7.63 -2.39 -0.02 1.49 16 37 H 0.10 1.14 8.14 -2.39 -0.02 1.13 16 38 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.07 0.92 8.02 -2.39 -0.02 0.90 16 40 H 0.09 1.45 7.95 -2.39 -0.02 1.43 16 41 H 0.10 1.99 7.64 -2.39 -0.02 1.97 16 42 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 43 H 0.10 2.19 8.14 -2.38 -0.02 2.17 16 44 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.10 1.73 7.89 -2.38 -0.02 1.71 16 Total: -1.00 -64.65 351.48 1.22 -63.43 By element: Atomic # 1 Polarization: 23.29 SS G_CDS: 0.39 Total: 23.69 kcal Atomic # 6 Polarization: -19.76 SS G_CDS: 4.72 Total: -15.04 kcal Atomic # 7 Polarization: -85.60 SS G_CDS: -5.87 Total: -91.46 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: -0.05 Total: -25.67 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -64.65 1.22 -63.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458013618.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.740 kcal (2) G-P(sol) polarization free energy of solvation -64.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds