Wall clock time and date at job start Tue Mar 31 2020 02:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.47262 * 2 1 4 4 C 1.50696 * 109.47253 * 240.00313 * 2 1 3 5 5 H 1.08009 * 120.00029 * 240.00009 * 4 2 1 6 6 C 1.37877 * 120.00620 * 59.99596 * 4 2 1 7 7 N 1.31521 * 119.99622 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00586 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47202 * 59.99989 * 8 6 4 10 10 H 1.48499 * 109.47071 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.46882 * 299.99693 * 8 6 4 12 12 C 1.52993 * 109.47290 * 119.99939 * 2 1 3 13 13 N 1.46503 * 109.47425 * 300.00196 * 12 2 1 14 14 C 1.34769 * 120.00501 * 180.02562 * 13 12 2 15 15 O 1.21282 * 119.99836 * 359.97438 * 14 13 12 16 16 C 1.50698 * 120.00332 * 179.97438 * 14 13 12 17 17 H 1.08998 * 109.87956 * 354.79885 * 16 14 13 18 18 C 1.54310 * 109.89236 * 233.58873 * 16 14 13 19 19 C 1.55141 * 103.02129 * 218.31152 * 18 16 14 20 20 C 1.54904 * 101.65225 * 35.65611 * 19 18 16 21 21 N 1.47449 * 109.88441 * 115.82055 * 16 14 13 22 22 C 1.46893 * 111.00268 * 356.15009 * 21 16 14 23 23 C 1.52997 * 117.50399 * 259.17534 * 22 21 16 24 24 C 1.52997 * 117.50045 * 190.51105 * 22 21 16 25 25 H 1.09004 * 109.47217 * 300.00089 * 1 2 3 26 26 H 1.08999 * 109.47457 * 59.99961 * 1 2 3 27 27 H 1.08998 * 109.47328 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47033 * 180.02562 * 3 2 1 29 29 H 1.09006 * 109.46789 * 300.00025 * 3 2 1 30 30 H 1.08991 * 109.46794 * 59.99756 * 3 2 1 31 31 H 0.96999 * 120.00297 * 179.97438 * 7 6 4 32 32 H 1.09000 * 109.47591 * 179.97438 * 12 2 1 33 33 H 1.08995 * 109.47162 * 60.00233 * 12 2 1 34 34 H 0.97004 * 119.99477 * 359.97438 * 13 12 2 35 35 H 1.09002 * 110.70969 * 336.69761 * 18 16 14 36 36 H 1.09001 * 110.70516 * 99.92590 * 18 16 14 37 37 H 1.09002 * 110.98871 * 277.56062 * 19 18 16 38 38 H 1.08999 * 111.02007 * 153.76371 * 19 18 16 39 39 H 1.08999 * 110.36956 * 204.10242 * 20 19 18 40 40 H 1.08996 * 110.46813 * 81.80869 * 20 19 18 41 41 H 1.09006 * 115.54778 * 44.84640 * 22 21 16 42 42 H 1.09009 * 117.49369 * 359.97438 * 23 22 21 43 43 H 1.08990 * 117.50474 * 145.02020 * 23 22 21 44 44 H 1.09000 * 117.50224 * 214.98510 * 24 22 21 45 45 H 1.09003 * 117.49796 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2394 -2.4828 7 7 0.9435 0.8302 -2.6035 8 14 2.3214 -1.1203 -4.0080 9 1 1.8259 -2.5201 -4.0078 10 1 1.8269 -0.4198 -5.2205 11 1 3.8064 -1.1207 -4.0082 12 6 2.0400 -0.7212 1.2492 13 7 1.5517 -0.0306 2.4454 14 6 1.8777 -0.4907 3.6695 15 8 2.5750 -1.4768 3.7807 16 6 1.3758 0.2200 4.8999 17 1 0.8468 1.1288 4.6132 18 6 2.5606 0.5677 5.8254 19 6 1.9810 0.3208 7.2431 20 6 1.0597 -0.8997 6.9962 21 7 0.4745 -0.6667 5.6587 22 6 0.2629 -1.9349 4.9484 23 6 -1.0411 -2.0968 4.1647 24 6 -0.8336 -2.8640 5.4729 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1299 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 0.7094 1.1618 -3.4844 32 1 3.1300 -0.7216 1.2490 33 1 1.6767 -1.7488 1.2492 34 1 0.9942 0.7582 2.3564 35 1 3.4060 -0.0933 5.6341 36 1 2.8510 1.6113 5.7041 37 1 1.4060 1.1813 7.5851 38 1 2.7722 0.0759 7.9517 39 1 0.2750 -0.9417 7.7516 40 1 1.6399 -1.8224 7.0011 41 1 1.1593 -2.3975 4.5350 42 1 -1.7423 -1.2622 4.1765 43 1 -1.0029 -2.6660 3.2360 44 1 -0.6590 -3.9378 5.4044 45 1 -1.3978 -2.5344 6.3454 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458013619.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:06 Heat of formation + Delta-G solvation = -5.919709 kcal Electronic energy + Delta-G solvation = -23291.164859 eV Core-core repulsion = 20116.385525 eV Total energy + Delta-G solvation = -3174.779334 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.51376 -37.95486 -36.26690 -35.87124 -33.30108 -31.00532 -30.23171 -29.34867 -25.72968 -25.66487 -24.95289 -22.66788 -22.37829 -21.43765 -20.86656 -19.46508 -18.73245 -17.09631 -16.76302 -15.86704 -15.39956 -15.10347 -14.83487 -14.57855 -14.13608 -13.91320 -13.40729 -13.21868 -12.89282 -12.63990 -12.27082 -12.20215 -11.74044 -11.68713 -11.42528 -11.31101 -11.23927 -11.19399 -10.89711 -10.83696 -10.73774 -10.40698 -10.24219 -10.21599 -9.95597 -9.72013 -9.63041 -9.30730 -8.81081 -8.53908 -8.37692 -8.12067 -6.02507 -4.12789 2.83526 3.29364 3.33843 3.37025 3.70996 3.86835 3.90459 4.39459 4.54379 4.59287 4.90987 5.12033 5.15777 5.18842 5.24101 5.33231 5.38152 5.43287 5.64729 5.71304 5.72199 5.77462 5.89020 5.98579 6.12198 6.17624 6.24396 6.28232 6.31036 6.50259 6.75966 6.80885 6.82879 6.92802 7.00883 7.01254 7.09518 7.34808 7.55301 7.68545 8.00506 8.03169 8.14381 8.37729 8.65582 8.87501 9.52993 10.98760 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.027330 B = 0.004280 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.267575 B = 6540.768349 C = 6933.621426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.057 3.943 3 C -0.131 4.131 4 C -0.507 4.507 5 H 0.056 0.944 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.893 3.107 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.277 1.277 12 C 0.132 3.868 13 N -0.705 5.705 14 C 0.502 3.498 15 O -0.555 6.555 16 C 0.056 3.944 17 H 0.098 0.902 18 C -0.129 4.129 19 C -0.127 4.127 20 C 0.044 3.956 21 N -0.479 5.479 22 C -0.031 4.031 23 C -0.157 4.157 24 C -0.172 4.172 25 H 0.007 0.993 26 H 0.085 0.915 27 H 0.026 0.974 28 H 0.026 0.974 29 H 0.085 0.915 30 H 0.006 0.994 31 H 0.260 0.740 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.399 0.601 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.052 0.948 41 H 0.127 0.873 42 H 0.097 0.903 43 H 0.094 0.906 44 H 0.091 0.909 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.016 0.296 16.486 16.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.056 3.944 3 C -0.188 4.188 4 C -0.545 4.545 5 H 0.074 0.926 6 C -0.134 4.134 7 N -0.524 5.524 8 Si 0.721 3.279 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 C 0.009 3.991 13 N -0.355 5.355 14 C 0.287 3.713 15 O -0.436 6.436 16 C -0.055 4.055 17 H 0.116 0.884 18 C -0.168 4.168 19 C -0.165 4.165 20 C -0.083 4.083 21 N -0.205 5.205 22 C -0.140 4.140 23 C -0.195 4.195 24 C -0.209 4.209 25 H 0.026 0.974 26 H 0.103 0.897 27 H 0.045 0.955 28 H 0.045 0.955 29 H 0.104 0.896 30 H 0.025 0.975 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.234 0.766 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.070 0.930 41 H 0.144 0.856 42 H 0.116 0.884 43 H 0.113 0.887 44 H 0.110 0.890 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.096 -0.051 16.418 16.551 hybrid contribution 0.757 -0.459 -1.088 1.402 sum -1.339 -0.510 15.330 15.397 Atomic orbital electron populations 1.21811 0.97660 0.99138 1.00087 1.18343 0.92844 0.92709 0.90506 1.21830 0.98526 0.98382 1.00103 1.20936 1.31562 1.12103 0.89932 0.92599 1.24871 0.94839 0.94912 0.98807 1.69794 1.36588 1.22684 1.23328 0.86641 0.79224 0.79805 0.82234 1.20296 1.21307 1.20309 1.21713 0.98010 0.95780 0.83585 1.46401 1.51657 1.31375 1.06037 1.20744 0.80305 0.85094 0.85173 1.90570 1.39169 1.26881 1.86935 1.22573 0.93621 0.97124 0.92214 0.88404 1.22762 0.97425 1.02616 0.93989 1.22689 0.98793 0.98387 0.96587 1.23008 0.96947 0.97661 0.90672 1.63769 1.42512 1.12404 1.01772 1.23474 0.95202 0.92487 1.02804 1.22974 0.98925 1.02511 0.95060 1.22950 1.02411 0.97187 0.98380 0.97435 0.89659 0.95505 0.95502 0.89588 0.97494 0.92947 0.92831 0.92835 0.76575 0.90066 0.90246 0.90553 0.90584 0.90181 0.92990 0.85563 0.88426 0.88736 0.89028 0.88822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.90 8.08 37.16 0.30 -2.60 16 2 C 0.06 1.30 0.50 -155.66 -0.08 1.22 16 3 C -0.13 -2.92 8.08 37.16 0.30 -2.62 16 4 C -0.51 -13.21 8.01 -34.44 -0.28 -13.49 16 5 H 0.06 1.47 7.74 -52.48 -0.41 1.07 16 6 C 0.07 1.76 5.15 -17.82 -0.09 1.66 16 7 N -0.89 -23.49 9.35 55.43 0.52 -22.97 16 8 Si 0.89 20.68 29.54 -169.99 -5.02 15.66 16 9 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 C 0.13 2.77 4.50 -4.04 -0.02 2.75 16 13 N -0.71 -12.46 4.96 -60.30 -0.30 -12.76 16 14 C 0.50 8.56 5.24 -10.99 -0.06 8.50 16 15 O -0.56 -11.17 13.92 5.56 0.08 -11.10 16 16 C 0.06 0.76 3.84 -67.88 -0.26 0.50 16 17 H 0.10 1.21 7.95 -51.93 -0.41 0.80 16 18 C -0.13 -1.51 6.43 -24.91 -0.16 -1.67 16 19 C -0.13 -1.21 7.08 -24.59 -0.17 -1.39 16 20 C 0.04 0.50 6.54 -2.30 -0.02 0.48 16 21 N -0.48 -6.38 5.31 -216.82 -1.15 -7.53 16 22 C -0.03 -0.46 3.63 -67.72 -0.25 -0.71 16 23 C -0.16 -2.17 10.46 -26.69 -0.28 -2.45 16 24 C -0.17 -2.10 10.23 -26.69 -0.27 -2.38 16 25 H 0.01 0.13 6.86 -51.93 -0.36 -0.22 16 26 H 0.08 2.12 6.07 -51.93 -0.32 1.80 16 27 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.09 2.13 6.07 -51.93 -0.32 1.82 16 30 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 31 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 32 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.40 6.51 6.02 -40.82 -0.25 6.26 16 35 H 0.08 1.10 7.40 -51.93 -0.38 0.72 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.05 0.63 7.81 -51.93 -0.41 0.22 16 41 H 0.13 2.24 5.06 -51.93 -0.26 1.98 16 42 H 0.10 1.32 8.14 -51.92 -0.42 0.90 16 43 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 44 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 346.03 15.07 5.21 5.21 Total: -1.00 -27.55 346.03 -9.66 -37.21 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: -7.67 Total: 8.43 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: -1.33 Total: -12.17 kcal Atomic # 7 Polarization: -42.32 SS G_CDS: -0.93 Total: -43.25 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.08 Total: -11.10 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -27.55 -9.66 -37.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458013619.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.289 kcal (2) G-P(sol) polarization free energy of solvation -27.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds