Wall clock time and date at job start Tue Mar 31 2020 02:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 109.47262 * 2 1 4 4 C 1.50696 * 109.47253 * 240.00313 * 2 1 3 5 5 H 1.08009 * 120.00029 * 240.00009 * 4 2 1 6 6 C 1.37877 * 120.00620 * 59.99596 * 4 2 1 7 7 N 1.31521 * 119.99622 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00586 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47202 * 59.99989 * 8 6 4 10 10 H 1.48499 * 109.47071 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.46882 * 299.99693 * 8 6 4 12 12 C 1.52993 * 109.47290 * 119.99939 * 2 1 3 13 13 N 1.46503 * 109.47425 * 300.00196 * 12 2 1 14 14 C 1.34769 * 120.00501 * 180.02562 * 13 12 2 15 15 O 1.21282 * 119.99836 * 359.97438 * 14 13 12 16 16 C 1.50698 * 120.00332 * 179.97438 * 14 13 12 17 17 H 1.08998 * 109.87956 * 354.79885 * 16 14 13 18 18 C 1.54310 * 109.89236 * 233.58873 * 16 14 13 19 19 C 1.55141 * 103.02129 * 218.31152 * 18 16 14 20 20 C 1.54904 * 101.65225 * 35.65611 * 19 18 16 21 21 N 1.47449 * 109.88441 * 115.82055 * 16 14 13 22 22 C 1.46893 * 111.00268 * 356.15009 * 21 16 14 23 23 C 1.52997 * 117.50399 * 259.17534 * 22 21 16 24 24 C 1.52997 * 117.50045 * 190.51105 * 22 21 16 25 25 H 1.09004 * 109.47217 * 300.00089 * 1 2 3 26 26 H 1.08999 * 109.47457 * 59.99961 * 1 2 3 27 27 H 1.08998 * 109.47328 * 179.97438 * 1 2 3 28 28 H 1.08992 * 109.47033 * 180.02562 * 3 2 1 29 29 H 1.09006 * 109.46789 * 300.00025 * 3 2 1 30 30 H 1.08991 * 109.46794 * 59.99756 * 3 2 1 31 31 H 0.96999 * 120.00297 * 179.97438 * 7 6 4 32 32 H 1.09000 * 109.47591 * 179.97438 * 12 2 1 33 33 H 1.08995 * 109.47162 * 60.00233 * 12 2 1 34 34 H 0.97004 * 119.99477 * 359.97438 * 13 12 2 35 35 H 1.09002 * 110.70969 * 336.69761 * 18 16 14 36 36 H 1.09001 * 110.70516 * 99.92590 * 18 16 14 37 37 H 1.09002 * 110.98871 * 277.56062 * 19 18 16 38 38 H 1.08999 * 111.02007 * 153.76371 * 19 18 16 39 39 H 1.08999 * 110.36956 * 204.10242 * 20 19 18 40 40 H 1.08996 * 110.46813 * 81.80869 * 20 19 18 41 41 H 1.09006 * 115.54778 * 44.84640 * 22 21 16 42 42 H 1.09009 * 117.49369 * 359.97438 * 23 22 21 43 43 H 1.08990 * 117.50474 * 145.02020 * 23 22 21 44 44 H 1.09000 * 117.50224 * 214.98510 * 24 22 21 45 45 H 1.09003 * 117.49796 * 359.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2394 -2.4828 7 7 0.9435 0.8302 -2.6035 8 14 2.3214 -1.1203 -4.0080 9 1 1.8259 -2.5201 -4.0078 10 1 1.8269 -0.4198 -5.2205 11 1 3.8064 -1.1207 -4.0082 12 6 2.0400 -0.7212 1.2492 13 7 1.5517 -0.0306 2.4454 14 6 1.8777 -0.4907 3.6695 15 8 2.5750 -1.4768 3.7807 16 6 1.3758 0.2200 4.8999 17 1 0.8468 1.1288 4.6132 18 6 2.5606 0.5677 5.8254 19 6 1.9810 0.3208 7.2431 20 6 1.0597 -0.8997 6.9962 21 7 0.4745 -0.6667 5.6587 22 6 0.2629 -1.9349 4.9484 23 6 -1.0411 -2.0968 4.1647 24 6 -0.8336 -2.8640 5.4729 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1299 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 0.7094 1.1618 -3.4844 32 1 3.1300 -0.7216 1.2490 33 1 1.6767 -1.7488 1.2492 34 1 0.9942 0.7582 2.3564 35 1 3.4060 -0.0933 5.6341 36 1 2.8510 1.6113 5.7041 37 1 1.4060 1.1813 7.5851 38 1 2.7722 0.0759 7.9517 39 1 0.2750 -0.9417 7.7516 40 1 1.6399 -1.8224 7.0011 41 1 1.1593 -2.3975 4.5350 42 1 -1.7423 -1.2622 4.1765 43 1 -1.0029 -2.6660 3.2360 44 1 -0.6590 -3.9378 5.4044 45 1 -1.3978 -2.5344 6.3454 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458013619.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:05 Heat of formation + Delta-G solvation = -22.715999 kcal Electronic energy + Delta-G solvation = -23291.893201 eV Core-core repulsion = 20116.385525 eV Total energy + Delta-G solvation = -3175.507676 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.74355 -39.29468 -37.92208 -36.90467 -35.01735 -32.81148 -31.17974 -30.45740 -27.57155 -27.47508 -26.73849 -23.76309 -23.42178 -22.65373 -21.79899 -20.81735 -20.51447 -18.44138 -17.88076 -17.68957 -16.71226 -16.67692 -16.14381 -16.06303 -15.44562 -14.98298 -14.84864 -14.74119 -14.46690 -14.05985 -13.80393 -13.25381 -13.24169 -13.09054 -12.83817 -12.69091 -12.58796 -12.58642 -12.41999 -12.24541 -12.14552 -12.08421 -11.74428 -11.50721 -11.32103 -11.30343 -11.01831 -10.92880 -10.71241 -10.40148 -9.99025 -9.32856 -8.02793 -6.18769 1.42987 1.44288 1.50768 1.51903 2.28863 2.48717 2.81187 2.85378 3.20615 3.54286 3.72638 3.84371 4.05504 4.10458 4.18384 4.34889 4.36515 4.42776 4.48605 4.57137 4.68460 4.70096 4.73444 4.88380 4.91364 4.96763 5.00740 5.05020 5.05529 5.09859 5.13272 5.18454 5.24813 5.30023 5.36449 5.57889 5.65971 5.66455 5.82013 6.00306 6.14129 6.20606 6.42523 6.63748 6.84832 7.27271 7.48850 8.95805 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.027330 B = 0.004280 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.267575 B = 6540.768349 C = 6933.621426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.053 3.947 3 C -0.120 4.120 4 C -0.530 4.530 5 H 0.042 0.958 6 C 0.030 3.970 7 N -0.898 5.898 8 Si 0.944 3.056 9 H -0.278 1.278 10 H -0.282 1.282 11 H -0.277 1.277 12 C 0.151 3.849 13 N -0.701 5.701 14 C 0.502 3.498 15 O -0.588 6.588 16 C 0.057 3.943 17 H 0.118 0.882 18 C -0.130 4.130 19 C -0.115 4.115 20 C 0.039 3.961 21 N -0.474 5.474 22 C -0.046 4.046 23 C -0.163 4.163 24 C -0.148 4.148 25 H 0.035 0.965 26 H 0.062 0.938 27 H 0.016 0.984 28 H 0.017 0.983 29 H 0.063 0.937 30 H 0.037 0.963 31 H 0.261 0.739 32 H 0.035 0.965 33 H 0.034 0.966 34 H 0.408 0.592 35 H 0.056 0.944 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.100 0.900 40 H 0.036 0.964 41 H 0.091 0.909 42 H 0.104 0.896 43 H 0.079 0.921 44 H 0.098 0.902 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.814 1.327 18.434 18.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.052 3.948 3 C -0.178 4.178 4 C -0.569 4.569 5 H 0.060 0.940 6 C -0.170 4.170 7 N -0.536 5.536 8 Si 0.770 3.230 9 H -0.203 1.203 10 H -0.207 1.207 11 H -0.203 1.203 12 C 0.027 3.973 13 N -0.352 5.352 14 C 0.289 3.711 15 O -0.470 6.470 16 C -0.054 4.054 17 H 0.136 0.864 18 C -0.168 4.168 19 C -0.153 4.153 20 C -0.088 4.088 21 N -0.199 5.199 22 C -0.154 4.154 23 C -0.201 4.201 24 C -0.185 4.185 25 H 0.054 0.946 26 H 0.081 0.919 27 H 0.035 0.965 28 H 0.036 0.964 29 H 0.081 0.919 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.245 0.755 35 H 0.075 0.925 36 H 0.119 0.881 37 H 0.115 0.885 38 H 0.110 0.890 39 H 0.119 0.881 40 H 0.055 0.945 41 H 0.109 0.891 42 H 0.122 0.878 43 H 0.098 0.902 44 H 0.116 0.884 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -2.902 0.995 18.383 18.637 hybrid contribution 1.019 -0.827 -1.662 2.118 sum -1.883 0.167 16.721 16.827 Atomic orbital electron populations 1.21633 0.97053 0.98502 1.00293 1.18338 0.93241 0.93020 0.90211 1.21665 0.97865 0.97821 1.00437 1.21224 1.31835 1.12170 0.91653 0.93982 1.25430 0.95104 0.95575 1.00879 1.69898 1.36860 1.23186 1.23677 0.85844 0.78615 0.78816 0.79689 1.20346 1.20699 1.20304 1.21215 0.96718 0.94889 0.84468 1.46232 1.52010 1.31537 1.05376 1.21445 0.79314 0.84566 0.85765 1.90566 1.40569 1.28476 1.87393 1.22736 0.94728 0.97284 0.90660 0.86434 1.22796 0.95837 1.03264 0.94940 1.22701 0.98928 0.98234 0.95415 1.23163 0.97803 0.97894 0.89971 1.63917 1.42275 1.11474 1.02279 1.23258 0.94292 0.93723 1.04155 1.22950 0.98703 1.03105 0.95340 1.23020 1.00341 0.97213 0.97937 0.94573 0.91926 0.96513 0.96362 0.91864 0.94405 0.92992 0.94618 0.94806 0.75502 0.92534 0.88111 0.88515 0.89012 0.88136 0.94498 0.89131 0.87789 0.90219 0.88368 0.86951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.22 8.08 71.98 0.58 -4.64 16 2 C 0.05 2.44 0.50 -52.93 -0.03 2.41 16 3 C -0.12 -5.33 8.08 71.98 0.58 -4.75 16 4 C -0.53 -28.21 8.01 25.60 0.21 -28.00 16 5 H 0.04 2.29 7.74 -2.91 -0.02 2.27 16 6 C 0.03 1.59 5.15 84.65 0.44 2.02 16 7 N -0.90 -47.85 9.35 21.45 0.20 -47.65 16 8 Si 0.94 42.71 29.54 68.60 2.03 44.74 16 9 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 10 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 11 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 12 C 0.15 6.50 4.50 86.38 0.39 6.88 16 13 N -0.70 -24.44 4.96 -463.08 -2.30 -26.74 16 14 C 0.50 17.00 5.24 87.66 0.46 17.46 16 15 O -0.59 -24.31 13.92 -3.04 -0.04 -24.36 16 16 C 0.06 1.44 3.84 44.51 0.17 1.61 16 17 H 0.12 2.53 7.95 -2.39 -0.02 2.51 16 18 C -0.13 -2.74 6.43 31.77 0.20 -2.53 16 19 C -0.11 -1.82 7.08 31.98 0.23 -1.59 16 20 C 0.04 0.77 6.54 86.77 0.57 1.33 16 21 N -0.47 -11.65 5.31 -839.89 -4.46 -16.10 16 22 C -0.05 -1.30 3.63 44.91 0.16 -1.14 16 23 C -0.16 -4.38 10.46 30.62 0.32 -4.06 16 24 C -0.15 -3.37 10.23 30.62 0.31 -3.05 16 25 H 0.04 1.36 6.86 -2.38 -0.02 1.34 16 26 H 0.06 3.11 6.07 -2.39 -0.01 3.09 16 27 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.06 3.12 6.07 -2.38 -0.01 3.11 16 30 H 0.04 1.40 6.86 -2.39 -0.02 1.38 16 31 H 0.26 13.41 8.31 -92.71 -0.77 12.64 16 32 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.41 12.59 6.02 -92.71 -0.56 12.04 16 35 H 0.06 1.49 7.40 -2.39 -0.02 1.47 16 36 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.04 0.84 7.81 -2.39 -0.02 0.83 16 41 H 0.09 3.32 5.06 -2.38 -0.01 3.30 16 42 H 0.10 2.64 8.14 -2.38 -0.02 2.62 16 43 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 44 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 45 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -60.47 346.03 0.43 -60.03 By element: Atomic # 1 Polarization: 27.70 SS G_CDS: 0.41 Total: 28.11 kcal Atomic # 6 Polarization: -22.63 SS G_CDS: 4.59 Total: -18.04 kcal Atomic # 7 Polarization: -83.94 SS G_CDS: -6.55 Total: -90.49 kcal Atomic # 8 Polarization: -24.31 SS G_CDS: -0.04 Total: -24.36 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -60.47 0.43 -60.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458013619.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.318 kcal (2) G-P(sol) polarization free energy of solvation -60.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds