Wall clock time and date at job start Tue Mar 31 2020 02:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47185 * 2 1 4 4 C 1.50700 * 109.46866 * 240.00118 * 2 1 3 5 5 H 1.08010 * 119.99678 * 240.00217 * 4 2 1 6 6 C 1.37873 * 120.00260 * 59.99556 * 4 2 1 7 7 N 1.31513 * 120.00014 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99937 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47168 * 60.00831 * 8 6 4 10 10 H 1.48506 * 109.46543 * 180.02562 * 8 6 4 11 11 H 1.48493 * 109.47033 * 300.00287 * 8 6 4 12 12 C 1.53001 * 109.46914 * 120.00365 * 2 1 3 13 13 N 1.46498 * 109.46931 * 299.99390 * 12 2 1 14 14 C 1.34777 * 120.00021 * 180.02562 * 13 12 2 15 15 O 1.21591 * 119.99967 * 0.02562 * 14 13 12 16 16 N 1.34782 * 120.00189 * 180.02562 * 14 13 12 17 17 C 1.46494 * 119.99799 * 179.97438 * 16 14 13 18 18 C 1.53008 * 109.46975 * 180.02562 * 17 16 14 19 19 H 1.08994 * 109.64067 * 55.41589 * 18 17 16 20 20 C 1.53024 * 109.63814 * 294.99930 * 18 17 16 21 21 C 1.50070 * 110.03521 * 190.94793 * 20 18 17 22 22 C 1.29172 * 124.28199 * 17.04512 * 21 20 18 23 23 C 1.50070 * 123.99416 * 359.61667 * 22 21 20 24 24 C 1.53019 * 110.14796 * 17.08522 * 23 22 21 25 25 H 1.09006 * 109.46912 * 299.99689 * 1 2 3 26 26 H 1.08994 * 109.47124 * 59.99875 * 1 2 3 27 27 H 1.09000 * 109.46936 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47365 * 180.02562 * 3 2 1 29 29 H 1.09007 * 109.47054 * 300.00368 * 3 2 1 30 30 H 1.09001 * 109.47285 * 60.00019 * 3 2 1 31 31 H 0.96995 * 120.00505 * 179.97438 * 7 6 4 32 32 H 1.09003 * 109.46762 * 180.02562 * 12 2 1 33 33 H 1.08996 * 109.47585 * 59.99987 * 12 2 1 34 34 H 0.97002 * 120.00362 * 0.02562 * 13 12 2 35 35 H 0.97000 * 119.99652 * 359.97438 * 16 14 13 36 36 H 1.09000 * 109.47400 * 60.00088 * 17 16 14 37 37 H 1.09000 * 109.47336 * 299.99834 * 17 16 14 38 38 H 1.09002 * 109.35972 * 311.08657 * 20 18 17 39 39 H 1.08998 * 109.35954 * 70.81421 * 20 18 17 40 40 H 1.08001 * 117.96524 * 197.04376 * 21 20 18 41 41 H 1.07999 * 118.04447 * 179.55051 * 22 21 20 42 42 H 1.09002 * 109.35816 * 256.88395 * 23 22 21 43 43 H 1.08997 * 109.36315 * 137.29615 * 23 22 21 44 44 H 1.08997 * 109.64626 * 190.88377 * 24 23 22 45 45 H 1.09001 * 109.81915 * 70.35509 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9434 0.8301 -2.6034 8 14 2.3224 -1.1197 -4.0080 9 1 1.8279 -2.5198 -4.0082 10 1 1.8276 -0.4193 -5.2204 11 1 3.8073 -1.1190 -4.0077 12 6 2.0400 -0.7213 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8777 -0.4909 3.6695 15 8 2.5774 -1.4790 3.7810 16 7 1.4281 0.1442 4.7700 17 6 1.7820 -0.3564 6.1005 18 6 1.1478 0.5384 7.1674 19 1 0.0716 0.5959 7.0048 20 6 1.7553 1.9408 7.0899 21 6 1.3443 2.7461 8.2876 22 6 0.8645 2.2399 9.3749 23 6 0.6425 0.7714 9.5901 24 6 1.4335 -0.0378 8.5600 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 0.7093 1.1617 -3.4843 32 1 3.1300 -0.7209 1.2494 33 1 1.6767 -1.7490 1.2492 34 1 0.9938 0.7578 2.3564 35 1 0.8702 0.9327 4.6810 36 1 2.8659 -0.3474 6.2157 37 1 1.4128 -1.3755 6.2153 38 1 2.8422 1.8627 7.0627 39 1 1.4059 2.4364 6.1842 40 1 1.4563 3.8191 8.2392 41 1 0.6082 2.9139 10.1788 42 1 -0.4193 0.5476 9.4872 43 1 0.9714 0.4993 10.5930 44 1 1.1212 -1.0815 8.5957 45 1 2.4999 0.0331 8.7742 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458020700.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:12:56 Heat of formation + Delta-G solvation = -40.813890 kcal Electronic energy + Delta-G solvation = -22021.949633 eV Core-core repulsion = 18845.657174 eV Total energy + Delta-G solvation = -3176.292460 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.79615 -38.76735 -36.45108 -34.62982 -33.21486 -31.62075 -31.00159 -30.44969 -26.32452 -25.69371 -25.38240 -24.41214 -23.23865 -21.31708 -20.50107 -18.73956 -18.23475 -18.01405 -16.31800 -15.84373 -15.67428 -15.25475 -14.72028 -14.55010 -14.13754 -13.92796 -13.70520 -13.40045 -13.19138 -12.83585 -12.76090 -12.59667 -12.18063 -12.11987 -11.98664 -11.34011 -11.16363 -11.00716 -10.82470 -10.77770 -10.70133 -10.40761 -10.34683 -10.18539 -9.73196 -9.59674 -9.27477 -9.26781 -8.91056 -8.76813 -8.38338 -8.13538 -5.99600 -4.09488 2.03961 3.16011 3.32088 3.36052 3.40450 3.70673 4.36475 4.39964 4.42613 4.56105 4.81813 4.93451 4.99077 5.06738 5.23526 5.27076 5.27883 5.46145 5.58404 5.63786 5.69441 5.72580 5.83780 5.92803 6.13384 6.25753 6.39077 6.40634 6.54112 6.69044 6.71406 6.83886 6.85930 6.94753 7.06558 7.14644 7.35127 7.46260 7.58988 7.72329 8.04206 8.15505 8.41412 8.54170 8.90333 9.10687 9.56114 11.01837 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.042324 B = 0.002877 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.406004 B = 9730.467001 C =10067.600642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.056 3.944 3 C -0.130 4.130 4 C -0.505 4.505 5 H 0.057 0.943 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.894 3.106 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.151 3.849 13 N -0.734 5.734 14 C 0.697 3.303 15 O -0.601 6.601 16 N -0.754 5.754 17 C 0.146 3.854 18 C -0.099 4.099 19 H 0.079 0.921 20 C -0.088 4.088 21 C -0.152 4.152 22 C -0.161 4.161 23 C -0.090 4.090 24 C -0.112 4.112 25 H 0.005 0.995 26 H 0.085 0.915 27 H 0.026 0.974 28 H 0.026 0.974 29 H 0.085 0.915 30 H 0.005 0.995 31 H 0.260 0.740 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.393 0.607 35 H 0.392 0.608 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.101 0.899 41 H 0.100 0.900 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.070 0.930 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.343 4.302 20.914 21.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.056 3.944 3 C -0.187 4.187 4 C -0.544 4.544 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.526 5.526 8 Si 0.722 3.278 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.203 1.203 12 C 0.028 3.972 13 N -0.388 5.388 14 C 0.396 3.604 15 O -0.480 6.480 16 N -0.411 5.411 17 C 0.021 3.979 18 C -0.118 4.118 19 H 0.097 0.903 20 C -0.125 4.125 21 C -0.170 4.170 22 C -0.179 4.179 23 C -0.127 4.127 24 C -0.150 4.150 25 H 0.024 0.976 26 H 0.103 0.897 27 H 0.045 0.955 28 H 0.045 0.955 29 H 0.103 0.897 30 H 0.024 0.976 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.227 0.773 35 H 0.226 0.774 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.119 0.881 41 H 0.118 0.882 42 H 0.091 0.909 43 H 0.089 0.911 44 H 0.088 0.912 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.760 3.485 20.833 21.196 hybrid contribution -0.225 0.445 -0.882 1.013 sum -1.984 3.929 19.951 20.431 Atomic orbital electron populations 1.21821 0.97816 0.99144 0.99969 1.18352 0.92763 0.92753 0.90559 1.21818 0.98572 0.98385 0.99970 1.20962 1.31444 1.12092 0.89905 0.92466 1.24875 0.94878 0.94934 0.98824 1.69793 1.36733 1.22755 1.23284 0.86631 0.79243 0.79793 0.82174 1.20281 1.21361 1.20285 1.21569 0.97836 0.95396 0.82449 1.45503 1.55632 1.33043 1.04640 1.16089 0.80558 0.83005 0.80715 1.90880 1.43158 1.27834 1.86153 1.45130 1.57568 1.33391 1.04984 1.21149 0.99727 0.97021 0.79956 1.21473 1.00774 0.94843 0.94731 0.90268 1.20539 1.01087 0.94226 0.96638 1.22007 1.00061 0.99621 0.95268 1.21974 1.01217 0.96782 0.97913 1.20439 1.00528 0.92492 0.99262 1.21566 1.00803 0.99296 0.93362 0.97564 0.89668 0.95468 0.95466 0.89673 0.97558 0.92989 0.93022 0.93021 0.77263 0.77418 0.91844 0.91825 0.90429 0.90870 0.88092 0.88180 0.90892 0.91056 0.91177 0.91336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.95 8.08 37.16 0.30 -2.65 16 2 C 0.06 1.32 0.50 -155.66 -0.08 1.24 16 3 C -0.13 -2.95 8.08 37.16 0.30 -2.65 16 4 C -0.51 -13.38 8.01 -34.44 -0.28 -13.65 16 5 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 6 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 7 N -0.89 -23.76 9.35 55.43 0.52 -23.24 16 8 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 9 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 10 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 C 0.15 3.29 4.50 -4.04 -0.02 3.27 16 13 N -0.73 -13.43 4.96 -65.22 -0.32 -13.76 16 14 C 0.70 12.66 8.57 -86.91 -0.74 11.91 16 15 O -0.60 -13.39 16.34 5.29 0.09 -13.30 16 16 N -0.75 -9.92 5.36 -65.22 -0.35 -10.27 16 17 C 0.15 1.67 5.07 -4.04 -0.02 1.65 16 18 C -0.10 -0.84 2.28 -90.40 -0.21 -1.05 16 19 H 0.08 0.67 8.13 -51.93 -0.42 0.25 16 20 C -0.09 -0.73 5.19 -28.18 -0.15 -0.88 16 21 C -0.15 -1.20 9.78 -35.83 -0.35 -1.55 16 22 C -0.16 -1.20 9.80 -35.83 -0.35 -1.55 16 23 C -0.09 -0.61 6.12 -28.18 -0.17 -0.79 16 24 C -0.11 -0.84 5.30 -26.52 -0.14 -0.98 16 25 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 26 H 0.08 2.13 6.07 -51.93 -0.32 1.82 16 27 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 2.13 6.07 -51.93 -0.32 1.82 16 30 H 0.01 0.11 6.86 -51.93 -0.36 -0.25 16 31 H 0.26 6.74 8.31 -40.82 -0.34 6.41 16 32 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.39 6.42 6.18 -40.82 -0.25 6.17 16 35 H 0.39 4.16 7.77 -40.82 -0.32 3.84 16 36 H 0.06 0.79 8.11 -51.93 -0.42 0.37 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.08 0.69 8.08 -51.93 -0.42 0.27 16 39 H 0.07 0.59 7.48 -51.93 -0.39 0.20 16 40 H 0.10 0.73 8.06 -52.49 -0.42 0.30 16 41 H 0.10 0.65 8.06 -52.49 -0.42 0.22 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.07 0.53 8.13 -51.93 -0.42 0.10 16 LS Contribution 350.35 15.07 5.28 5.28 Total: -1.00 -29.52 350.35 -9.56 -39.08 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -7.75 Total: 6.37 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: -2.00 Total: -6.02 kcal Atomic # 7 Polarization: -47.11 SS G_CDS: -0.15 Total: -47.27 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: 0.09 Total: -13.30 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.52 -9.56 -39.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458020700.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.730 kcal (2) G-P(sol) polarization free energy of solvation -29.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds