Wall clock time and date at job start Tue Mar 31 2020 02:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47185 * 2 1 4 4 C 1.50700 * 109.46866 * 240.00118 * 2 1 3 5 5 H 1.08010 * 119.99678 * 240.00217 * 4 2 1 6 6 C 1.37873 * 120.00260 * 59.99556 * 4 2 1 7 7 N 1.31513 * 120.00014 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99937 * 179.97438 * 6 4 2 9 9 H 1.48495 * 109.47168 * 60.00831 * 8 6 4 10 10 H 1.48506 * 109.46543 * 180.02562 * 8 6 4 11 11 H 1.48493 * 109.47033 * 300.00287 * 8 6 4 12 12 C 1.53001 * 109.46914 * 120.00365 * 2 1 3 13 13 N 1.46498 * 109.46931 * 299.99390 * 12 2 1 14 14 C 1.34777 * 120.00021 * 180.02562 * 13 12 2 15 15 O 1.21591 * 119.99967 * 0.02562 * 14 13 12 16 16 N 1.34782 * 120.00189 * 180.02562 * 14 13 12 17 17 C 1.46494 * 119.99799 * 179.97438 * 16 14 13 18 18 C 1.53008 * 109.46975 * 180.02562 * 17 16 14 19 19 H 1.08994 * 109.64067 * 55.41589 * 18 17 16 20 20 C 1.53024 * 109.63814 * 294.99930 * 18 17 16 21 21 C 1.50070 * 110.03521 * 190.94793 * 20 18 17 22 22 C 1.29172 * 124.28199 * 17.04512 * 21 20 18 23 23 C 1.50070 * 123.99416 * 359.61667 * 22 21 20 24 24 C 1.53019 * 110.14796 * 17.08522 * 23 22 21 25 25 H 1.09006 * 109.46912 * 299.99689 * 1 2 3 26 26 H 1.08994 * 109.47124 * 59.99875 * 1 2 3 27 27 H 1.09000 * 109.46936 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47365 * 180.02562 * 3 2 1 29 29 H 1.09007 * 109.47054 * 300.00368 * 3 2 1 30 30 H 1.09001 * 109.47285 * 60.00019 * 3 2 1 31 31 H 0.96995 * 120.00505 * 179.97438 * 7 6 4 32 32 H 1.09003 * 109.46762 * 180.02562 * 12 2 1 33 33 H 1.08996 * 109.47585 * 59.99987 * 12 2 1 34 34 H 0.97002 * 120.00362 * 0.02562 * 13 12 2 35 35 H 0.97000 * 119.99652 * 359.97438 * 16 14 13 36 36 H 1.09000 * 109.47400 * 60.00088 * 17 16 14 37 37 H 1.09000 * 109.47336 * 299.99834 * 17 16 14 38 38 H 1.09002 * 109.35972 * 311.08657 * 20 18 17 39 39 H 1.08998 * 109.35954 * 70.81421 * 20 18 17 40 40 H 1.08001 * 117.96524 * 197.04376 * 21 20 18 41 41 H 1.07999 * 118.04447 * 179.55051 * 22 21 20 42 42 H 1.09002 * 109.35816 * 256.88395 * 23 22 21 43 43 H 1.08997 * 109.36315 * 137.29615 * 23 22 21 44 44 H 1.08997 * 109.64626 * 190.88377 * 24 23 22 45 45 H 1.09001 * 109.81915 * 70.35509 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9434 0.8301 -2.6034 8 14 2.3224 -1.1197 -4.0080 9 1 1.8279 -2.5198 -4.0082 10 1 1.8276 -0.4193 -5.2204 11 1 3.8073 -1.1190 -4.0077 12 6 2.0400 -0.7213 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8777 -0.4909 3.6695 15 8 2.5774 -1.4790 3.7810 16 7 1.4281 0.1442 4.7700 17 6 1.7820 -0.3564 6.1005 18 6 1.1478 0.5384 7.1674 19 1 0.0716 0.5959 7.0048 20 6 1.7553 1.9408 7.0899 21 6 1.3443 2.7461 8.2876 22 6 0.8645 2.2399 9.3749 23 6 0.6425 0.7714 9.5901 24 6 1.4335 -0.0378 8.5600 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 0.7093 1.1617 -3.4843 32 1 3.1300 -0.7209 1.2494 33 1 1.6767 -1.7490 1.2492 34 1 0.9938 0.7578 2.3564 35 1 0.8702 0.9327 4.6810 36 1 2.8659 -0.3474 6.2157 37 1 1.4128 -1.3755 6.2153 38 1 2.8422 1.8627 7.0627 39 1 1.4059 2.4364 6.1842 40 1 1.4563 3.8191 8.2392 41 1 0.6082 2.9139 10.1788 42 1 -0.4193 0.5476 9.4872 43 1 0.9714 0.4993 10.5930 44 1 1.1212 -1.0815 8.5957 45 1 2.4999 0.0331 8.7742 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458020700.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:12:56 Heat of formation + Delta-G solvation = -57.727218 kcal Electronic energy + Delta-G solvation = -22022.683050 eV Core-core repulsion = 18845.657174 eV Total energy + Delta-G solvation = -3177.025877 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.10613 -39.63509 -38.17968 -35.77296 -34.96494 -32.92964 -32.01055 -31.47055 -27.63763 -27.54430 -27.18832 -25.86404 -23.92268 -22.09420 -21.92584 -20.56655 -19.48920 -18.78802 -17.75464 -17.28443 -16.75239 -16.60446 -16.55394 -15.50183 -15.32396 -15.19589 -14.86075 -14.66587 -14.41024 -14.23922 -13.97791 -13.78489 -13.20038 -13.19545 -13.07725 -12.85885 -12.82725 -12.63194 -12.61038 -12.22873 -12.12374 -11.67718 -11.49354 -11.46399 -11.31599 -11.10126 -11.01814 -10.69465 -10.39348 -10.26530 -9.83844 -9.62157 -8.00970 -6.16593 1.45276 1.46076 1.47064 1.52813 1.85483 2.23641 2.47519 3.22584 3.45000 3.67482 3.78294 3.95259 4.26969 4.35130 4.44449 4.49051 4.54893 4.56183 4.68170 4.73063 4.78405 4.83763 4.88808 5.02169 5.06171 5.07923 5.11109 5.12573 5.15533 5.22078 5.32221 5.40366 5.46666 5.57885 5.65684 5.68505 5.69094 5.82515 6.10848 6.12414 6.17123 6.23792 6.45377 6.87552 7.19676 7.51026 7.67092 8.97854 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.042324 B = 0.002877 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.406004 B = 9730.467001 C =10067.600642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.053 3.947 3 C -0.120 4.120 4 C -0.530 4.530 5 H 0.044 0.956 6 C 0.029 3.971 7 N -0.899 5.899 8 Si 0.945 3.055 9 H -0.277 1.277 10 H -0.282 1.282 11 H -0.277 1.277 12 C 0.168 3.832 13 N -0.726 5.726 14 C 0.695 3.305 15 O -0.644 6.644 16 N -0.732 5.732 17 C 0.146 3.854 18 C -0.088 4.088 19 H 0.086 0.914 20 C -0.088 4.088 21 C -0.164 4.164 22 C -0.161 4.161 23 C -0.090 4.090 24 C -0.113 4.113 25 H 0.037 0.963 26 H 0.062 0.938 27 H 0.017 0.983 28 H 0.017 0.983 29 H 0.062 0.938 30 H 0.037 0.963 31 H 0.260 0.740 32 H 0.034 0.966 33 H 0.034 0.966 34 H 0.405 0.595 35 H 0.409 0.591 36 H 0.053 0.947 37 H 0.056 0.944 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.107 0.893 41 H 0.111 0.889 42 H 0.080 0.920 43 H 0.083 0.917 44 H 0.074 0.926 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.142 5.133 22.336 23.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.052 3.948 3 C -0.178 4.178 4 C -0.569 4.569 5 H 0.062 0.938 6 C -0.171 4.171 7 N -0.538 5.538 8 Si 0.772 3.228 9 H -0.203 1.203 10 H -0.208 1.208 11 H -0.203 1.203 12 C 0.043 3.957 13 N -0.382 5.382 14 C 0.394 3.606 15 O -0.527 6.527 16 N -0.389 5.389 17 C 0.022 3.978 18 C -0.106 4.106 19 H 0.104 0.896 20 C -0.125 4.125 21 C -0.182 4.182 22 C -0.179 4.179 23 C -0.127 4.127 24 C -0.151 4.151 25 H 0.056 0.944 26 H 0.081 0.919 27 H 0.036 0.964 28 H 0.036 0.964 29 H 0.081 0.919 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.242 0.758 35 H 0.245 0.755 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.088 0.912 39 H 0.094 0.906 40 H 0.125 0.875 41 H 0.129 0.871 42 H 0.098 0.902 43 H 0.101 0.899 44 H 0.093 0.907 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.591 4.364 22.290 22.860 hybrid contribution 0.024 0.188 -1.252 1.267 sum -2.567 4.552 21.037 21.677 Atomic orbital electron populations 1.21665 0.97103 0.98629 1.00369 1.18344 0.93255 0.93027 0.90155 1.21661 0.97877 0.97844 1.00371 1.21259 1.31769 1.12216 0.91618 0.93762 1.25443 0.95139 0.95603 1.00929 1.69895 1.36988 1.23253 1.23664 0.85823 0.78624 0.78824 0.79576 1.20268 1.20771 1.20287 1.21108 0.96615 0.94641 0.83307 1.45196 1.55837 1.33227 1.03918 1.16235 0.80240 0.82690 0.81400 1.90854 1.45122 1.29900 1.86783 1.44974 1.56514 1.33142 1.04273 1.21273 0.99419 0.97454 0.79649 1.21386 1.00754 0.94347 0.94155 0.89564 1.20522 1.00622 0.94114 0.97225 1.22052 1.00895 0.99963 0.95296 1.22175 1.00434 0.97343 0.97961 1.20472 1.00781 0.91931 0.99520 1.21580 1.00861 0.99748 0.92872 0.94432 0.91872 0.96390 0.96401 0.91879 0.94421 0.93014 0.94780 0.94766 0.75822 0.75490 0.92871 0.92592 0.91216 0.90583 0.87520 0.87114 0.90215 0.89901 0.90700 0.91668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.35 8.08 71.98 0.58 -4.76 16 2 C 0.05 2.47 0.50 -52.93 -0.03 2.44 16 3 C -0.12 -5.34 8.08 71.98 0.58 -4.76 16 4 C -0.53 -28.33 8.01 25.60 0.21 -28.12 16 5 H 0.04 2.41 7.74 -2.91 -0.02 2.39 16 6 C 0.03 1.52 5.15 84.65 0.44 1.95 16 7 N -0.90 -48.08 9.35 21.45 0.20 -47.88 16 8 Si 0.94 42.84 29.54 68.60 2.03 44.87 16 9 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 10 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 11 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 12 C 0.17 7.34 4.50 86.38 0.39 7.73 16 13 N -0.73 -25.67 4.96 -478.53 -2.37 -28.05 16 14 C 0.69 24.58 8.57 179.05 1.53 26.11 16 15 O -0.64 -28.75 16.34 -4.00 -0.07 -28.82 16 16 N -0.73 -18.03 5.36 -478.52 -2.56 -20.59 16 17 C 0.15 3.17 5.07 86.38 0.44 3.61 16 18 C -0.09 -1.32 2.28 -10.65 -0.02 -1.34 16 19 H 0.09 1.22 8.13 -2.39 -0.02 1.20 16 20 C -0.09 -1.30 5.19 29.66 0.15 -1.15 16 21 C -0.16 -2.27 9.78 27.30 0.27 -2.00 16 22 C -0.16 -2.02 9.80 27.30 0.27 -1.75 16 23 C -0.09 -1.00 6.12 29.66 0.18 -0.82 16 24 C -0.11 -1.48 5.30 30.73 0.16 -1.31 16 25 H 0.04 1.39 6.86 -2.38 -0.02 1.37 16 26 H 0.06 3.12 6.07 -2.39 -0.01 3.11 16 27 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.06 3.12 6.07 -2.38 -0.01 3.10 16 30 H 0.04 1.39 6.86 -2.39 -0.02 1.38 16 31 H 0.26 13.43 8.31 -92.71 -0.77 12.66 16 32 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.41 12.22 6.18 -92.71 -0.57 11.65 16 35 H 0.41 7.58 7.77 -92.71 -0.72 6.86 16 36 H 0.05 1.29 8.11 -2.39 -0.02 1.27 16 37 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.07 1.15 8.08 -2.39 -0.02 1.13 16 39 H 0.08 1.06 7.48 -2.39 -0.02 1.05 16 40 H 0.11 1.33 8.06 -2.91 -0.02 1.31 16 41 H 0.11 1.15 8.06 -2.91 -0.02 1.13 16 42 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.06 0.91 8.13 -2.39 -0.02 0.89 16 Total: -1.00 -63.12 350.35 2.04 -61.07 By element: Atomic # 1 Polarization: 23.91 SS G_CDS: -0.32 Total: 23.58 kcal Atomic # 6 Polarization: -9.33 SS G_CDS: 5.15 Total: -4.18 kcal Atomic # 7 Polarization: -91.78 SS G_CDS: -4.74 Total: -96.52 kcal Atomic # 8 Polarization: -28.75 SS G_CDS: -0.07 Total: -28.82 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -63.12 2.04 -61.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458020700.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.345 kcal (2) G-P(sol) polarization free energy of solvation -63.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds