Wall clock time and date at job start Tue Mar 31 2020 02:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46835 * 2 1 4 4 C 1.50699 * 109.46929 * 240.00417 * 2 1 3 5 5 H 1.07999 * 119.99815 * 237.00369 * 4 2 1 6 6 C 1.37881 * 120.00339 * 57.00451 * 4 2 1 7 7 N 1.31510 * 119.99880 * 5.54494 * 6 4 2 8 8 Si 1.86793 * 119.99942 * 185.53961 * 6 4 2 9 9 H 1.48507 * 109.47182 * 85.00650 * 8 6 4 10 10 H 1.48504 * 109.47050 * 205.00395 * 8 6 4 11 11 H 1.48501 * 109.47510 * 325.00116 * 8 6 4 12 12 C 1.52993 * 109.47032 * 120.00259 * 2 1 3 13 13 N 1.46503 * 109.47427 * 300.00213 * 12 2 1 14 14 C 1.34773 * 120.00092 * 180.02562 * 13 12 2 15 15 O 1.21586 * 119.99965 * 359.97438 * 14 13 12 16 16 N 1.34776 * 119.99704 * 179.97438 * 14 13 12 17 17 C 1.46500 * 119.99737 * 180.02562 * 16 14 13 18 18 C 1.52999 * 109.47158 * 180.02562 * 17 16 14 19 19 H 1.08994 * 109.63929 * 305.42005 * 18 17 16 20 20 C 1.53024 * 109.81631 * 65.94645 * 18 17 16 21 21 C 1.50070 * 110.14570 * 169.22474 * 20 18 17 22 22 C 1.29441 * 124.07705 * 342.86936 * 21 20 18 23 23 C 1.50067 * 124.07726 * 0.47079 * 22 21 20 24 24 C 1.53031 * 110.14356 * 342.86537 * 23 22 21 25 25 H 1.09002 * 109.47124 * 293.92952 * 1 2 3 26 26 H 1.09000 * 109.46889 * 53.93123 * 1 2 3 27 27 H 1.09001 * 109.47345 * 173.92727 * 1 2 3 28 28 H 1.09001 * 109.46843 * 179.97438 * 3 2 1 29 29 H 1.08993 * 109.47664 * 299.99836 * 3 2 1 30 30 H 1.09001 * 109.46750 * 60.00610 * 3 2 1 31 31 H 0.97000 * 120.00446 * 179.97438 * 7 6 4 32 32 H 1.09000 * 109.47187 * 179.97438 * 12 2 1 33 33 H 1.09007 * 109.46969 * 59.99995 * 12 2 1 34 34 H 0.97001 * 119.99842 * 359.97438 * 13 12 2 35 35 H 0.97001 * 120.00230 * 0.02562 * 16 14 13 36 36 H 1.08996 * 109.47538 * 60.00037 * 17 16 14 37 37 H 1.09001 * 109.47114 * 300.00208 * 17 16 14 38 38 H 1.08995 * 109.35968 * 289.43011 * 20 18 17 39 39 H 1.08998 * 109.35817 * 49.01872 * 20 18 17 40 40 H 1.07997 * 117.96149 * 162.84958 * 21 20 18 41 41 H 1.08004 * 117.96709 * 180.48933 * 22 21 20 42 42 H 1.09000 * 109.36345 * 222.66111 * 23 22 21 43 43 H 1.08999 * 109.35947 * 103.06781 * 23 22 21 44 44 H 1.08991 * 109.64784 * 289.75278 * 24 23 22 45 45 H 1.09006 * 109.64123 * 169.11793 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6925 -1.5593 -1.1322 6 6 1.6491 -0.2763 -2.4819 7 7 0.9351 0.8209 -2.6071 8 14 2.1441 -1.2468 -3.9992 9 1 1.1618 -2.3359 -4.2325 10 1 2.1708 -0.3436 -5.1776 11 1 3.4932 -1.8326 -3.7939 12 6 2.0400 -0.7213 1.2492 13 7 1.5516 -0.0308 2.4454 14 6 1.8777 -0.4910 3.6695 15 8 2.5767 -1.4796 3.7809 16 7 1.4288 0.1445 4.7699 17 6 1.7836 -0.3554 6.1005 18 6 1.1502 0.5398 7.1673 19 1 1.4413 1.5761 6.9959 20 6 -0.3740 0.4173 7.1091 21 6 -0.9918 1.0778 8.3067 22 6 -0.3422 1.3771 9.3855 23 6 1.1218 1.1147 9.5857 24 6 1.6198 0.0956 8.5584 25 1 -0.3633 0.4168 0.9393 26 1 -0.3633 0.6051 -0.8307 27 1 -0.3634 -1.0219 -0.1087 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 1.9562 0.8901 31 1 0.6657 1.1265 -3.4875 32 1 3.1300 -0.7217 1.2490 33 1 1.6766 -1.7490 1.2491 34 1 0.9943 0.7581 2.3565 35 1 0.8708 0.9330 4.6810 36 1 2.8675 -0.3464 6.2149 37 1 1.4146 -1.3745 6.2160 38 1 -0.7407 0.8980 6.2021 39 1 -0.6515 -0.6366 7.0945 40 1 -2.0438 1.3187 8.2657 41 1 -0.8876 1.8446 10.1920 42 1 1.2849 0.7244 10.5902 43 1 1.6753 2.0463 9.4679 44 1 1.2078 -0.8871 8.7877 45 1 2.7088 0.0542 8.5816 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458020701.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:13:00 Heat of formation + Delta-G solvation = -40.980788 kcal Electronic energy + Delta-G solvation = -22018.193623 eV Core-core repulsion = 18841.893926 eV Total energy + Delta-G solvation = -3176.299697 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.79247 -38.75993 -36.45106 -34.62234 -33.21092 -31.61022 -31.00412 -30.45432 -26.32360 -25.69904 -25.37950 -24.40868 -23.23613 -21.32256 -20.50589 -18.73873 -18.24498 -18.00937 -16.31213 -15.84492 -15.67679 -15.25757 -14.71270 -14.54861 -14.13882 -13.92752 -13.70501 -13.40138 -13.19032 -12.82963 -12.75674 -12.59401 -12.18372 -12.11999 -11.99075 -11.37507 -11.16513 -11.00644 -10.84063 -10.77166 -10.66947 -10.41714 -10.34530 -10.19452 -9.73214 -9.59078 -9.27815 -9.25603 -8.91176 -8.76642 -8.38141 -8.13385 -6.00374 -4.08854 2.02833 3.15877 3.30772 3.37056 3.41350 3.70584 4.36658 4.40025 4.42603 4.55972 4.81697 4.93416 4.98839 5.06728 5.23403 5.26848 5.28131 5.46050 5.58222 5.63749 5.69305 5.72545 5.83702 5.92777 6.13215 6.25562 6.38873 6.40485 6.54202 6.68402 6.71276 6.83995 6.85376 6.94198 7.06302 7.14367 7.35075 7.46019 7.58899 7.72989 8.02565 8.14844 8.40940 8.54093 8.90877 9.10579 9.56384 11.01748 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.042056 B = 0.002875 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.624849 B = 9736.018022 C =10060.211445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.056 3.944 3 C -0.129 4.129 4 C -0.506 4.506 5 H 0.058 0.942 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.275 1.275 12 C 0.151 3.849 13 N -0.734 5.734 14 C 0.697 3.303 15 O -0.601 6.601 16 N -0.754 5.754 17 C 0.146 3.854 18 C -0.099 4.099 19 H 0.079 0.921 20 C -0.088 4.088 21 C -0.152 4.152 22 C -0.161 4.161 23 C -0.090 4.090 24 C -0.112 4.112 25 H 0.006 0.994 26 H 0.080 0.920 27 H 0.029 0.971 28 H 0.026 0.974 29 H 0.085 0.915 30 H 0.005 0.995 31 H 0.259 0.741 32 H 0.051 0.949 33 H 0.052 0.948 34 H 0.393 0.607 35 H 0.392 0.608 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.077 0.923 40 H 0.102 0.898 41 H 0.100 0.900 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.068 0.932 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.299 3.635 20.982 21.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.055 3.945 3 C -0.187 4.187 4 C -0.545 4.545 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.721 3.279 9 H -0.206 1.206 10 H -0.214 1.214 11 H -0.200 1.200 12 C 0.028 3.972 13 N -0.388 5.388 14 C 0.396 3.604 15 O -0.480 6.480 16 N -0.411 5.411 17 C 0.022 3.978 18 C -0.118 4.118 19 H 0.097 0.903 20 C -0.125 4.125 21 C -0.170 4.170 22 C -0.179 4.179 23 C -0.127 4.127 24 C -0.150 4.150 25 H 0.025 0.975 26 H 0.099 0.901 27 H 0.048 0.952 28 H 0.045 0.955 29 H 0.103 0.897 30 H 0.024 0.976 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.227 0.773 35 H 0.226 0.774 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.095 0.905 40 H 0.120 0.880 41 H 0.118 0.882 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.087 0.913 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -2.720 2.812 20.904 21.267 hybrid contribution -0.434 0.308 -0.893 1.039 sum -3.154 3.120 20.011 20.497 Atomic orbital electron populations 1.21795 0.97779 1.00112 0.98874 1.18357 0.92745 0.92755 0.90608 1.21837 0.98588 0.98366 0.99910 1.20981 1.29270 1.14311 0.89938 0.92410 1.24875 0.95014 0.94781 0.98792 1.69826 1.37951 1.21430 1.23241 0.86598 0.79051 0.79910 0.82368 1.20637 1.21367 1.19961 1.21554 0.97832 0.95420 0.82436 1.45511 1.55661 1.33017 1.04648 1.16083 0.80546 0.83018 0.80712 1.90879 1.43174 1.27812 1.86150 1.45131 1.57585 1.33370 1.04987 1.21146 0.99528 0.97218 0.79942 1.21466 0.95307 1.00294 0.94748 0.90290 1.20532 0.94240 1.01057 0.96669 1.22081 0.99658 0.99951 0.95283 1.22043 0.96377 1.01526 0.97968 1.20442 0.93531 0.99431 0.99310 1.21577 1.00928 0.99141 0.93399 0.97501 0.90095 0.95212 0.95478 0.89660 0.97627 0.93050 0.93028 0.92992 0.77254 0.77419 0.91803 0.91849 0.90885 0.90454 0.88026 0.88194 0.91050 0.90889 0.91340 0.91152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.90 8.03 37.16 0.30 -2.60 16 2 C 0.06 1.31 0.50 -155.66 -0.08 1.23 16 3 C -0.13 -2.94 8.11 37.16 0.30 -2.64 16 4 C -0.51 -13.40 8.01 -34.44 -0.28 -13.68 16 5 H 0.06 1.55 7.75 -52.49 -0.41 1.14 16 6 C 0.07 1.77 5.13 -17.82 -0.09 1.68 16 7 N -0.89 -23.75 9.45 55.43 0.52 -23.23 16 8 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 12 C 0.15 3.29 4.50 -4.04 -0.02 3.27 16 13 N -0.73 -13.41 4.91 -65.23 -0.32 -13.73 16 14 C 0.70 12.64 8.57 -86.92 -0.74 11.90 16 15 O -0.60 -13.37 16.34 5.29 0.09 -13.29 16 16 N -0.75 -9.90 5.37 -65.23 -0.35 -10.25 16 17 C 0.15 1.67 5.07 -4.04 -0.02 1.65 16 18 C -0.10 -0.84 2.26 -90.40 -0.20 -1.05 16 19 H 0.08 0.67 8.12 -51.93 -0.42 0.24 16 20 C -0.09 -0.73 5.21 -28.18 -0.15 -0.88 16 21 C -0.15 -1.20 9.80 -35.90 -0.35 -1.55 16 22 C -0.16 -1.20 9.80 -35.90 -0.35 -1.55 16 23 C -0.09 -0.61 6.12 -28.17 -0.17 -0.79 16 24 C -0.11 -0.84 5.31 -26.51 -0.14 -0.98 16 25 H 0.01 0.12 6.71 -51.93 -0.35 -0.23 16 26 H 0.08 2.01 6.25 -51.93 -0.32 1.68 16 27 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 2.14 6.10 -51.93 -0.32 1.82 16 30 H 0.00 0.10 6.86 -51.93 -0.36 -0.26 16 31 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 32 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.05 1.20 8.14 -51.93 -0.42 0.77 16 34 H 0.39 6.41 6.17 -40.82 -0.25 6.15 16 35 H 0.39 4.15 7.84 -40.82 -0.32 3.83 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.06 0.79 8.10 -51.93 -0.42 0.37 16 38 H 0.07 0.59 7.55 -51.93 -0.39 0.20 16 39 H 0.08 0.68 8.07 -51.93 -0.42 0.26 16 40 H 0.10 0.73 8.06 -52.49 -0.42 0.31 16 41 H 0.10 0.65 8.06 -52.48 -0.42 0.22 16 42 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.07 0.52 8.12 -51.93 -0.42 0.10 16 45 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 350.58 15.07 5.28 5.28 Total: -1.00 -29.57 350.58 -9.56 -39.13 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -7.76 Total: 6.22 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: -2.00 Total: -5.99 kcal Atomic # 7 Polarization: -47.07 SS G_CDS: -0.15 Total: -47.21 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: 0.09 Total: -13.29 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -29.57 -9.56 -39.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458020701.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.854 kcal (2) G-P(sol) polarization free energy of solvation -29.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds