Wall clock time and date at job start Tue Mar 31 2020 02:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46835 * 2 1 4 4 C 1.50699 * 109.46929 * 240.00417 * 2 1 3 5 5 H 1.07999 * 119.99815 * 237.00369 * 4 2 1 6 6 C 1.37881 * 120.00339 * 57.00451 * 4 2 1 7 7 N 1.31510 * 119.99880 * 5.54494 * 6 4 2 8 8 Si 1.86793 * 119.99942 * 185.53961 * 6 4 2 9 9 H 1.48507 * 109.47182 * 85.00650 * 8 6 4 10 10 H 1.48504 * 109.47050 * 205.00395 * 8 6 4 11 11 H 1.48501 * 109.47510 * 325.00116 * 8 6 4 12 12 C 1.52993 * 109.47032 * 120.00259 * 2 1 3 13 13 N 1.46503 * 109.47427 * 300.00213 * 12 2 1 14 14 C 1.34773 * 120.00092 * 180.02562 * 13 12 2 15 15 O 1.21586 * 119.99965 * 359.97438 * 14 13 12 16 16 N 1.34776 * 119.99704 * 179.97438 * 14 13 12 17 17 C 1.46500 * 119.99737 * 180.02562 * 16 14 13 18 18 C 1.52999 * 109.47158 * 180.02562 * 17 16 14 19 19 H 1.08994 * 109.63929 * 305.42005 * 18 17 16 20 20 C 1.53024 * 109.81631 * 65.94645 * 18 17 16 21 21 C 1.50070 * 110.14570 * 169.22474 * 20 18 17 22 22 C 1.29441 * 124.07705 * 342.86936 * 21 20 18 23 23 C 1.50067 * 124.07726 * 0.47079 * 22 21 20 24 24 C 1.53031 * 110.14356 * 342.86537 * 23 22 21 25 25 H 1.09002 * 109.47124 * 293.92952 * 1 2 3 26 26 H 1.09000 * 109.46889 * 53.93123 * 1 2 3 27 27 H 1.09001 * 109.47345 * 173.92727 * 1 2 3 28 28 H 1.09001 * 109.46843 * 179.97438 * 3 2 1 29 29 H 1.08993 * 109.47664 * 299.99836 * 3 2 1 30 30 H 1.09001 * 109.46750 * 60.00610 * 3 2 1 31 31 H 0.97000 * 120.00446 * 179.97438 * 7 6 4 32 32 H 1.09000 * 109.47187 * 179.97438 * 12 2 1 33 33 H 1.09007 * 109.46969 * 59.99995 * 12 2 1 34 34 H 0.97001 * 119.99842 * 359.97438 * 13 12 2 35 35 H 0.97001 * 120.00230 * 0.02562 * 16 14 13 36 36 H 1.08996 * 109.47538 * 60.00037 * 17 16 14 37 37 H 1.09001 * 109.47114 * 300.00208 * 17 16 14 38 38 H 1.08995 * 109.35968 * 289.43011 * 20 18 17 39 39 H 1.08998 * 109.35817 * 49.01872 * 20 18 17 40 40 H 1.07997 * 117.96149 * 162.84958 * 21 20 18 41 41 H 1.08004 * 117.96709 * 180.48933 * 22 21 20 42 42 H 1.09000 * 109.36345 * 222.66111 * 23 22 21 43 43 H 1.08999 * 109.35947 * 103.06781 * 23 22 21 44 44 H 1.08991 * 109.64784 * 289.75278 * 24 23 22 45 45 H 1.09006 * 109.64123 * 169.11793 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6925 -1.5593 -1.1322 6 6 1.6491 -0.2763 -2.4819 7 7 0.9351 0.8209 -2.6071 8 14 2.1441 -1.2468 -3.9992 9 1 1.1618 -2.3359 -4.2325 10 1 2.1708 -0.3436 -5.1776 11 1 3.4932 -1.8326 -3.7939 12 6 2.0400 -0.7213 1.2492 13 7 1.5516 -0.0308 2.4454 14 6 1.8777 -0.4910 3.6695 15 8 2.5767 -1.4796 3.7809 16 7 1.4288 0.1445 4.7699 17 6 1.7836 -0.3554 6.1005 18 6 1.1502 0.5398 7.1673 19 1 1.4413 1.5761 6.9959 20 6 -0.3740 0.4173 7.1091 21 6 -0.9918 1.0778 8.3067 22 6 -0.3422 1.3771 9.3855 23 6 1.1218 1.1147 9.5857 24 6 1.6198 0.0956 8.5584 25 1 -0.3633 0.4168 0.9393 26 1 -0.3633 0.6051 -0.8307 27 1 -0.3634 -1.0219 -0.1087 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 1.9562 0.8901 31 1 0.6657 1.1265 -3.4875 32 1 3.1300 -0.7217 1.2490 33 1 1.6766 -1.7490 1.2491 34 1 0.9943 0.7581 2.3565 35 1 0.8708 0.9330 4.6810 36 1 2.8675 -0.3464 6.2149 37 1 1.4146 -1.3745 6.2160 38 1 -0.7407 0.8980 6.2021 39 1 -0.6515 -0.6366 7.0945 40 1 -2.0438 1.3187 8.2657 41 1 -0.8876 1.8446 10.1920 42 1 1.2849 0.7244 10.5902 43 1 1.6753 2.0463 9.4679 44 1 1.2078 -0.8871 8.7877 45 1 2.7088 0.0542 8.5816 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458020701.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:12:59 Heat of formation + Delta-G solvation = -57.932908 kcal Electronic energy + Delta-G solvation = -22018.928722 eV Core-core repulsion = 18841.893926 eV Total energy + Delta-G solvation = -3177.034796 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.10519 -39.62317 -38.17852 -35.76525 -34.96128 -32.92846 -32.00157 -31.47483 -27.63779 -27.54845 -27.18645 -25.85976 -23.91687 -22.09800 -21.93013 -20.56515 -19.49335 -18.78811 -17.75991 -17.28145 -16.74611 -16.60222 -16.54924 -15.50315 -15.32740 -15.19594 -14.85582 -14.66206 -14.40233 -14.24244 -13.97811 -13.78099 -13.24161 -13.19356 -13.06638 -12.86484 -12.82564 -12.65094 -12.58812 -12.22178 -12.13448 -11.67622 -11.48800 -11.46284 -11.31179 -11.10570 -11.02572 -10.69686 -10.39200 -10.26306 -9.82441 -9.62025 -8.02011 -6.16173 1.43739 1.45952 1.46218 1.53752 1.85449 2.23737 2.47425 3.22025 3.44965 3.67510 3.78412 3.95343 4.27300 4.34945 4.44453 4.49102 4.54951 4.56082 4.68557 4.73243 4.78474 4.83747 4.88792 5.02388 5.06271 5.07461 5.11127 5.12274 5.15502 5.21622 5.32177 5.39982 5.46534 5.57982 5.65575 5.68679 5.69739 5.82434 6.10804 6.11950 6.15658 6.23315 6.44810 6.87889 7.19731 7.51071 7.67159 8.97633 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.042056 B = 0.002875 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.624849 B = 9736.018022 C =10060.211445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.053 3.947 3 C -0.119 4.119 4 C -0.530 4.530 5 H 0.044 0.956 6 C 0.029 3.971 7 N -0.899 5.899 8 Si 0.944 3.056 9 H -0.278 1.278 10 H -0.283 1.283 11 H -0.276 1.276 12 C 0.168 3.832 13 N -0.726 5.726 14 C 0.695 3.305 15 O -0.644 6.644 16 N -0.732 5.732 17 C 0.146 3.854 18 C -0.088 4.088 19 H 0.086 0.914 20 C -0.088 4.088 21 C -0.164 4.164 22 C -0.162 4.162 23 C -0.090 4.090 24 C -0.113 4.113 25 H 0.038 0.962 26 H 0.060 0.940 27 H 0.017 0.983 28 H 0.017 0.983 29 H 0.062 0.938 30 H 0.036 0.964 31 H 0.260 0.740 32 H 0.034 0.966 33 H 0.034 0.966 34 H 0.405 0.595 35 H 0.409 0.591 36 H 0.056 0.944 37 H 0.053 0.947 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.108 0.892 41 H 0.111 0.889 42 H 0.083 0.917 43 H 0.079 0.921 44 H 0.065 0.935 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.874 4.629 22.412 23.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.052 3.948 3 C -0.177 4.177 4 C -0.569 4.569 5 H 0.062 0.938 6 C -0.171 4.171 7 N -0.537 5.537 8 Si 0.771 3.229 9 H -0.204 1.204 10 H -0.208 1.208 11 H -0.201 1.201 12 C 0.043 3.957 13 N -0.382 5.382 14 C 0.394 3.606 15 O -0.527 6.527 16 N -0.389 5.389 17 C 0.022 3.978 18 C -0.106 4.106 19 H 0.104 0.896 20 C -0.125 4.125 21 C -0.182 4.182 22 C -0.180 4.180 23 C -0.127 4.127 24 C -0.151 4.151 25 H 0.057 0.943 26 H 0.079 0.921 27 H 0.036 0.964 28 H 0.036 0.964 29 H 0.081 0.919 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.242 0.758 35 H 0.245 0.755 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.126 0.874 41 H 0.129 0.871 42 H 0.101 0.899 43 H 0.098 0.902 44 H 0.083 0.917 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.330 3.853 22.368 22.940 hybrid contribution -0.252 0.001 -1.266 1.291 sum -3.582 3.854 21.102 21.748 Atomic orbital electron populations 1.21638 0.97034 0.99160 0.99691 1.18348 0.93256 0.93021 0.90193 1.21676 0.97886 0.97832 1.00311 1.21268 1.29540 1.14441 0.91657 0.93774 1.25441 0.95185 0.95563 1.00876 1.69924 1.38203 1.21951 1.23655 0.85789 0.78526 0.78828 0.79747 1.20423 1.20841 1.20149 1.21094 0.96606 0.94675 0.83292 1.45202 1.55865 1.33206 1.03921 1.16229 0.80231 0.82699 0.81396 1.90854 1.45145 1.29871 1.86781 1.44975 1.56532 1.33122 1.04274 1.21269 0.99351 0.97520 0.79636 1.21377 0.95297 0.99797 0.94171 0.89588 1.20515 0.93961 1.00761 0.97248 1.22127 1.00130 1.00648 0.95309 1.22244 0.96786 1.00902 0.98017 1.20474 0.93181 0.99464 0.99577 1.21591 1.01275 0.99304 0.92907 0.94301 0.92143 0.96384 0.96416 0.91891 0.94472 0.93035 0.94798 0.94721 0.75806 0.75488 0.92567 0.92875 0.90613 0.91226 0.87443 0.87134 0.89896 0.90220 0.91665 0.90681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.22 8.03 71.98 0.58 -4.64 16 2 C 0.05 2.45 0.50 -52.93 -0.03 2.42 16 3 C -0.12 -5.32 8.11 71.98 0.58 -4.74 16 4 C -0.53 -28.37 8.01 25.60 0.20 -28.16 16 5 H 0.04 2.42 7.75 -2.91 -0.02 2.39 16 6 C 0.03 1.55 5.13 84.66 0.43 1.99 16 7 N -0.90 -48.10 9.45 21.45 0.20 -47.89 16 8 Si 0.94 42.89 29.54 68.60 2.03 44.92 16 9 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 10 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 11 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 12 C 0.17 7.33 4.50 86.38 0.39 7.72 16 13 N -0.73 -25.61 4.91 -478.54 -2.35 -27.96 16 14 C 0.69 24.53 8.57 179.06 1.53 26.07 16 15 O -0.64 -28.71 16.34 -3.99 -0.07 -28.77 16 16 N -0.73 -17.98 5.37 -478.54 -2.57 -20.56 16 17 C 0.15 3.17 5.07 86.38 0.44 3.60 16 18 C -0.09 -1.31 2.26 -10.65 -0.02 -1.34 16 19 H 0.09 1.22 8.12 -2.39 -0.02 1.20 16 20 C -0.09 -1.30 5.21 29.66 0.15 -1.15 16 21 C -0.16 -2.26 9.80 27.04 0.27 -2.00 16 22 C -0.16 -2.02 9.80 27.04 0.27 -1.76 16 23 C -0.09 -1.00 6.12 29.66 0.18 -0.82 16 24 C -0.11 -1.48 5.31 30.74 0.16 -1.31 16 25 H 0.04 1.43 6.71 -2.39 -0.02 1.41 16 26 H 0.06 2.95 6.25 -2.39 -0.01 2.94 16 27 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.06 3.12 6.10 -2.39 -0.01 3.10 16 30 H 0.04 1.37 6.86 -2.39 -0.02 1.36 16 31 H 0.26 13.41 8.31 -92.71 -0.77 12.64 16 32 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.03 1.62 8.14 -2.38 -0.02 1.60 16 34 H 0.41 12.18 6.17 -92.71 -0.57 11.61 16 35 H 0.41 7.55 7.84 -92.71 -0.73 6.82 16 36 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.05 1.29 8.10 -2.39 -0.02 1.27 16 38 H 0.08 1.06 7.55 -2.39 -0.02 1.04 16 39 H 0.07 1.14 8.07 -2.39 -0.02 1.12 16 40 H 0.11 1.33 8.06 -2.91 -0.02 1.31 16 41 H 0.11 1.15 8.06 -2.91 -0.02 1.12 16 42 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.06 0.90 8.12 -2.39 -0.02 0.88 16 45 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 Total: -1.00 -63.23 350.58 2.05 -61.18 By element: Atomic # 1 Polarization: 23.53 SS G_CDS: -0.33 Total: 23.20 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: 5.14 Total: -4.11 kcal Atomic # 7 Polarization: -91.69 SS G_CDS: -4.72 Total: -96.41 kcal Atomic # 8 Polarization: -28.71 SS G_CDS: -0.07 Total: -28.77 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -63.23 2.05 -61.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458020701.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.242 kcal (2) G-P(sol) polarization free energy of solvation -63.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds