Wall clock time and date at job start Tue Mar 31 2020 02:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47432 * 2 1 4 4 C 1.50701 * 109.47123 * 240.00222 * 2 1 3 5 5 H 1.08001 * 120.00046 * 241.34794 * 4 2 1 6 6 C 1.37878 * 120.00249 * 61.34740 * 4 2 1 7 7 N 1.31511 * 120.00248 * 193.98135 * 6 4 2 8 8 Si 1.86804 * 119.99855 * 13.97813 * 6 4 2 9 9 H 1.48497 * 109.46815 * 84.54966 * 8 6 4 10 10 H 1.48497 * 109.47103 * 204.55297 * 8 6 4 11 11 H 1.48502 * 109.46846 * 324.55007 * 8 6 4 12 12 C 1.52999 * 109.47376 * 120.00551 * 2 1 3 13 13 N 1.46501 * 109.46578 * 299.99726 * 12 2 1 14 14 C 1.34783 * 119.99885 * 179.97438 * 13 12 2 15 15 O 1.21273 * 119.99880 * 0.02562 * 14 13 12 16 16 C 1.50700 * 119.99936 * 179.97438 * 14 13 12 17 17 C 1.54135 * 110.74584 * 206.01306 * 16 14 13 18 18 C 1.55161 * 102.88304 * 98.16319 * 17 16 14 19 19 C 1.54843 * 101.66190 * 36.15647 * 18 17 16 20 20 N 1.47852 * 111.38451 * 325.29842 * 16 14 13 21 21 C 1.47954 * 108.37817 * 120.68372 * 20 16 14 22 22 C 1.54835 * 105.06472 * 337.18809 * 21 20 16 23 23 C 1.54141 * 110.74222 * 84.57502 * 16 14 13 24 24 H 1.08998 * 109.46844 * 309.37280 * 1 2 3 25 25 H 1.09000 * 109.46650 * 69.36450 * 1 2 3 26 26 H 1.08993 * 109.47177 * 189.36552 * 1 2 3 27 27 H 1.09006 * 109.47420 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.47510 * 299.99734 * 3 2 1 29 29 H 1.08999 * 109.46915 * 60.00391 * 3 2 1 30 30 H 0.97007 * 120.00223 * 180.02562 * 7 6 4 31 31 H 1.08991 * 109.47514 * 180.02562 * 12 2 1 32 32 H 1.09001 * 109.47335 * 59.99115 * 12 2 1 33 33 H 0.96998 * 120.00681 * 359.97438 * 13 12 2 34 34 H 1.08996 * 110.73038 * 339.81726 * 17 16 14 35 35 H 1.09002 * 110.73130 * 216.50815 * 17 16 14 36 36 H 1.08996 * 110.99154 * 154.24588 * 18 17 16 37 37 H 1.09002 * 110.99159 * 278.06303 * 18 17 16 38 38 H 1.09004 * 110.32004 * 82.22596 * 19 18 17 39 39 H 1.08998 * 110.32441 * 204.43179 * 19 18 17 40 40 H 1.09000 * 110.32542 * 218.29608 * 21 20 16 41 41 H 1.09000 * 110.40815 * 96.12980 * 21 20 16 42 42 H 1.09004 * 110.99056 * 278.57961 * 22 21 20 43 43 H 1.09001 * 110.99046 * 154.76453 * 22 21 20 44 44 H 1.08995 * 110.73302 * 20.18811 * 23 16 14 45 45 H 1.09005 * 110.72648 * 143.48740 * 23 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6352 -1.6010 -1.1316 6 6 1.7224 -0.2233 -2.4826 7 7 1.9157 -0.9725 -3.5460 8 14 1.0276 1.5008 -2.6684 9 1 2.1418 2.4817 -2.7084 10 1 0.2470 1.5867 -3.9287 11 1 0.1418 1.8043 -1.5158 12 6 2.0401 -0.7214 1.2491 13 7 1.5517 -0.0307 2.4453 14 6 1.8769 -0.4916 3.6695 15 8 2.5741 -1.4776 3.7807 16 6 1.3751 0.2192 4.8999 17 6 2.3197 -0.0229 6.0937 18 6 3.1954 1.2579 6.1071 19 6 2.1724 2.3410 5.6851 20 7 1.3030 1.6805 4.6867 21 6 -0.0970 2.1132 4.8912 22 6 -0.9494 0.8420 4.6571 23 6 -0.0432 -0.2600 5.2669 24 1 -0.3633 0.6519 0.7944 25 1 -0.3632 0.3622 -0.9618 26 1 -0.3633 -1.0139 0.1672 27 1 3.1301 1.4424 0.0005 28 1 1.6768 1.9563 -0.8900 29 1 1.6768 1.9562 0.8900 30 1 1.6980 -0.6297 -4.4270 31 1 3.1300 -0.7210 1.2494 32 1 1.6766 -1.7490 1.2492 33 1 0.9944 0.7581 2.3564 34 1 2.9333 -0.9081 5.9268 35 1 1.7541 -0.1132 7.0211 36 1 3.5831 1.4554 7.1065 37 1 4.0067 1.1839 5.3829 38 1 1.5849 2.6624 6.5452 39 1 2.6852 3.1919 5.2367 40 1 -0.3637 2.8858 4.1701 41 1 -0.2366 2.4806 5.9079 42 1 -1.1103 0.6703 3.5927 43 1 -1.8989 0.9051 5.1887 44 1 -0.2532 -1.2279 4.8119 45 1 -0.1669 -0.3062 6.3489 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458040504.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:09:36 Heat of formation + Delta-G solvation = -43.051477 kcal Electronic energy + Delta-G solvation = -23802.063458 eV Core-core repulsion = 20625.673970 eV Total energy + Delta-G solvation = -3176.389489 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.94215 -39.70504 -38.28576 -35.18461 -34.65250 -33.35646 -32.31828 -29.43560 -28.03775 -27.52966 -26.88011 -26.38690 -23.25804 -22.48634 -21.63688 -20.92597 -20.28376 -18.47858 -18.05027 -17.22451 -17.02639 -16.53367 -16.09446 -15.96743 -15.26727 -15.10819 -14.91850 -14.64657 -14.51823 -14.27101 -14.05842 -13.91345 -13.76057 -13.33454 -13.12643 -12.90852 -12.50241 -12.43219 -12.39194 -12.17881 -12.04042 -11.96470 -11.89376 -11.78672 -11.73998 -11.33398 -11.10339 -10.83949 -10.61753 -10.39967 -9.93474 -9.44959 -8.30495 -6.32127 1.36512 1.37529 1.50566 1.65233 2.34482 2.36766 2.90965 3.05460 3.47781 3.53799 3.76641 4.01491 4.02935 4.11685 4.12537 4.23552 4.30956 4.40639 4.46006 4.56200 4.67076 4.70355 4.76944 4.82261 4.85687 4.86414 4.91334 4.93044 4.99337 5.04846 5.07738 5.08737 5.17075 5.17795 5.25106 5.27380 5.43868 5.56409 5.71497 5.76715 5.79794 6.03416 6.30222 6.69693 6.74972 7.32352 7.36668 8.86764 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.025556 B = 0.005087 C = 0.004868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.350548 B = 5503.212496 C = 5750.803980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.029 3.971 3 C -0.143 4.143 4 C -0.518 4.518 5 H 0.026 0.974 6 C 0.018 3.982 7 N -0.946 5.946 8 Si 0.945 3.055 9 H -0.282 1.282 10 H -0.313 1.313 11 H -0.205 1.205 12 C 0.155 3.845 13 N -0.695 5.695 14 C 0.527 3.473 15 O -0.597 6.597 16 C 0.073 3.927 17 C -0.126 4.126 18 C -0.131 4.131 19 C 0.039 3.961 20 N -0.523 5.523 21 C 0.033 3.967 22 C -0.132 4.132 23 C -0.124 4.124 24 H 0.062 0.938 25 H 0.047 0.953 26 H 0.040 0.960 27 H 0.043 0.957 28 H 0.036 0.964 29 H 0.069 0.931 30 H 0.265 0.735 31 H 0.036 0.964 32 H 0.038 0.962 33 H 0.412 0.588 34 H 0.064 0.936 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.050 0.950 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.091 0.909 41 H 0.076 0.924 42 H 0.065 0.935 43 H 0.103 0.897 44 H 0.061 0.939 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.220 11.193 23.216 26.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.028 3.972 3 C -0.200 4.200 4 C -0.556 4.556 5 H 0.044 0.956 6 C -0.180 4.180 7 N -0.585 5.585 8 Si 0.774 3.226 9 H -0.210 1.210 10 H -0.242 1.242 11 H -0.129 1.129 12 C 0.031 3.969 13 N -0.346 5.346 14 C 0.313 3.687 15 O -0.478 6.478 16 C -0.020 4.020 17 C -0.165 4.165 18 C -0.169 4.169 19 C -0.088 4.088 20 N -0.249 5.249 21 C -0.094 4.094 22 C -0.170 4.170 23 C -0.163 4.163 24 H 0.081 0.919 25 H 0.066 0.934 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.055 0.945 29 H 0.088 0.912 30 H 0.074 0.926 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.250 0.750 34 H 0.083 0.917 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.069 0.931 38 H 0.097 0.903 39 H 0.103 0.897 40 H 0.110 0.890 41 H 0.094 0.906 42 H 0.084 0.916 43 H 0.122 0.878 44 H 0.080 0.920 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -6.567 10.633 22.543 25.776 hybrid contribution -0.009 -0.013 -0.488 0.488 sum -6.576 10.620 22.056 25.347 Atomic orbital electron populations 1.22183 0.95981 1.00498 1.00813 1.18633 0.93844 0.93005 0.91724 1.22253 1.00740 0.96895 1.00102 1.21014 1.32975 1.11044 0.90592 0.95572 1.25849 0.95346 1.01619 0.95136 1.70112 1.50690 1.38277 0.99397 0.86326 0.79448 0.79864 0.76993 1.20976 1.24193 1.12859 1.21037 0.97053 0.94937 0.83861 1.45972 1.52429 1.31428 1.04761 1.20834 0.78863 0.83566 0.85436 1.90636 1.40544 1.29222 1.87386 1.22296 0.98084 0.89869 0.91766 1.22841 0.97713 0.99450 0.96457 1.22781 0.97636 0.93906 1.02579 1.23335 0.94570 0.97094 0.93836 1.65172 1.09039 1.01817 1.48837 1.23422 0.85908 0.97815 1.02237 1.22861 0.99133 0.93385 1.01642 1.22875 0.91074 0.99458 1.02846 0.91939 0.93416 0.94069 0.93820 0.94526 0.91175 0.92626 0.94547 0.94322 0.75009 0.91683 0.88008 0.88136 0.93108 0.90350 0.89699 0.89030 0.90606 0.91603 0.87815 0.92047 0.87815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.41 7.53 71.98 0.54 -4.87 16 2 C 0.03 1.29 0.50 -52.93 -0.03 1.27 16 3 C -0.14 -5.71 7.52 71.98 0.54 -5.17 16 4 C -0.52 -29.44 8.62 25.60 0.22 -29.22 16 5 H 0.03 1.69 7.99 -2.91 -0.02 1.66 16 6 C 0.02 1.03 5.32 84.66 0.45 1.49 16 7 N -0.95 -59.46 13.96 21.45 0.30 -59.16 16 8 Si 0.94 43.52 22.79 68.60 1.56 45.08 16 9 H -0.28 -12.81 7.10 99.48 0.71 -12.10 16 10 H -0.31 -14.70 7.11 99.48 0.71 -13.99 16 11 H -0.20 -8.01 4.65 99.48 0.46 -7.55 16 12 C 0.16 6.68 4.49 86.38 0.39 7.07 16 13 N -0.70 -23.98 4.93 -463.07 -2.28 -26.26 16 14 C 0.53 18.08 6.68 87.66 0.59 18.67 16 15 O -0.60 -25.58 15.66 -3.01 -0.05 -25.63 16 16 C 0.07 1.72 0.91 3.37 0.00 1.72 16 17 C -0.13 -2.67 5.99 31.72 0.19 -2.48 16 18 C -0.13 -2.38 7.07 31.96 0.23 -2.15 16 19 C 0.04 0.61 6.72 86.73 0.58 1.19 16 20 N -0.52 -10.32 4.79 -831.19 -3.98 -14.30 16 21 C 0.03 0.46 6.72 86.73 0.58 1.04 16 22 C -0.13 -1.95 7.07 31.96 0.23 -1.73 16 23 C -0.12 -2.29 6.03 31.72 0.19 -2.10 16 24 H 0.06 1.95 7.13 -2.39 -0.02 1.93 16 25 H 0.05 1.96 4.30 -2.39 -0.01 1.95 16 26 H 0.04 1.64 8.12 -2.39 -0.02 1.62 16 27 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 28 H 0.04 1.49 2.25 -2.39 -0.01 1.49 16 29 H 0.07 2.28 6.86 -2.39 -0.02 2.26 16 30 H 0.26 15.65 8.31 -92.70 -0.77 14.88 16 31 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.41 12.35 5.71 -92.71 -0.53 11.82 16 34 H 0.06 1.79 6.85 -2.39 -0.02 1.77 16 35 H 0.10 1.56 7.30 -2.39 -0.02 1.54 16 36 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.08 0.85 7.08 -2.38 -0.02 0.83 16 39 H 0.08 1.32 8.14 -2.39 -0.02 1.31 16 40 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.08 0.74 7.08 -2.39 -0.02 0.72 16 42 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 43 H 0.10 1.03 8.14 -2.39 -0.02 1.02 16 44 H 0.06 1.37 7.84 -2.39 -0.02 1.36 16 45 H 0.10 1.41 7.30 -2.38 -0.02 1.39 16 Total: -1.00 -72.06 329.56 0.46 -71.60 By element: Atomic # 1 Polarization: 23.73 SS G_CDS: 0.21 Total: 23.93 kcal Atomic # 6 Polarization: -19.97 SS G_CDS: 4.70 Total: -15.27 kcal Atomic # 7 Polarization: -93.76 SS G_CDS: -5.96 Total: -99.72 kcal Atomic # 8 Polarization: -25.58 SS G_CDS: -0.05 Total: -25.63 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 1.56 Total: 45.08 kcal Total: -72.06 0.46 -71.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458040504.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.547 kcal (2) G-P(sol) polarization free energy of solvation -72.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds