Wall clock time and date at job start Tue Mar 31 2020 02:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50705 * 119.99609 * 2 1 4 4 H 1.09004 * 109.70338 * 359.06065 * 3 2 1 5 5 C 1.52752 * 109.51204 * 238.93902 * 3 2 1 6 6 C 1.53037 * 109.38469 * 185.70701 * 5 3 2 7 7 C 1.53044 * 109.53577 * 61.24133 * 6 5 3 8 8 C 1.53188 * 109.31254 * 298.63511 * 7 6 5 9 9 N 1.46924 * 109.58222 * 119.41055 * 3 2 1 10 10 C 1.34782 * 120.63097 * 353.42463 * 9 3 2 11 11 O 1.21583 * 120.00377 * 4.82417 * 10 9 3 12 12 N 1.34781 * 119.99825 * 184.83141 * 10 9 3 13 13 C 1.46500 * 119.99750 * 184.73226 * 12 10 9 14 14 C 1.53003 * 109.46709 * 179.97438 * 13 12 10 15 15 C 1.53001 * 109.47174 * 59.99988 * 14 13 12 16 16 C 1.52998 * 109.47000 * 299.99578 * 14 13 12 17 17 C 1.50697 * 109.46707 * 180.02562 * 14 13 12 18 18 H 1.07999 * 120.00660 * 5.90205 * 17 14 13 19 19 C 1.37879 * 119.99731 * 185.91335 * 17 14 13 20 20 N 1.31516 * 120.00033 * 149.61087 * 19 17 14 21 21 Si 1.86796 * 119.99962 * 329.60203 * 19 17 14 22 22 H 1.48505 * 109.47388 * 180.02562 * 21 19 17 23 23 H 1.48502 * 109.47108 * 60.00730 * 21 19 17 24 24 H 1.48493 * 109.47455 * 300.00543 * 21 19 17 25 25 H 1.07996 * 120.00032 * 5.01308 * 1 2 3 26 26 H 1.08001 * 119.99623 * 185.01188 * 1 2 3 27 27 H 1.07993 * 120.00057 * 180.02562 * 2 1 3 28 28 H 1.09005 * 109.56369 * 65.67036 * 5 3 2 29 29 H 1.08999 * 109.36394 * 305.62258 * 5 3 2 30 30 H 1.09002 * 109.46343 * 301.22116 * 6 5 3 31 31 H 1.09004 * 109.45930 * 181.25770 * 6 5 3 32 32 H 1.08998 * 109.49950 * 178.67993 * 7 6 5 33 33 H 1.08998 * 109.49636 * 58.58651 * 7 6 5 34 34 H 1.09000 * 109.58395 * 294.84543 * 8 7 6 35 35 H 1.09003 * 109.70553 * 174.49179 * 8 7 6 36 36 H 0.96997 * 119.99936 * 4.73227 * 12 10 9 37 37 H 1.09000 * 109.46985 * 60.00174 * 13 12 10 38 38 H 1.09001 * 109.47156 * 299.99370 * 13 12 10 39 39 H 1.08999 * 109.46598 * 173.69111 * 15 14 13 40 40 H 1.08991 * 109.46995 * 293.69040 * 15 14 13 41 41 H 1.09000 * 109.46874 * 53.69398 * 15 14 13 42 42 H 1.08994 * 109.47620 * 301.86799 * 16 14 13 43 43 H 1.09008 * 109.46960 * 61.87478 * 16 14 13 44 44 H 1.09004 * 109.46939 * 181.86989 * 16 14 13 45 45 H 0.97002 * 120.00147 * 354.96871 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 1 1.3586 2.1365 -0.0168 5 6 2.9619 1.3757 -1.2334 6 6 3.8297 2.6340 -1.1584 7 6 4.7186 2.5693 0.0857 8 6 3.8360 2.5154 1.3367 9 7 2.8984 1.3918 1.2059 10 6 2.8100 0.4553 2.1711 11 8 2.0995 -0.5182 2.0104 12 7 3.5091 0.5979 3.3145 13 6 3.4950 -0.4680 4.3195 14 6 4.3626 -0.0570 5.5108 15 6 3.8090 1.2303 6.1250 16 6 5.7985 0.1796 5.0385 17 6 4.3486 -1.1537 6.5443 18 1 3.8577 -2.0915 6.3301 19 6 4.9625 -0.9598 7.7636 20 7 4.5000 -1.5641 8.8362 21 14 6.4514 0.1610 7.8919 22 1 6.9219 0.1999 9.2999 23 1 6.0787 1.5309 7.4561 24 1 7.5374 -0.3570 7.0217 25 1 -0.5400 0.9317 -0.0817 26 1 -0.5399 -0.9318 0.0817 27 1 1.8501 -0.9352 -0.0004 28 1 2.3460 1.4114 -2.1320 29 1 3.6018 0.4938 -1.2652 30 1 3.1891 3.5141 -1.1017 31 1 4.4554 2.6972 -2.0488 32 1 5.3531 3.4547 0.1260 33 1 5.3419 1.6762 0.0415 34 1 3.2787 3.4474 1.4310 35 1 4.4585 2.3709 2.2197 36 1 4.0215 1.4063 3.4720 37 1 3.8899 -1.3849 3.8821 38 1 2.4720 -0.6368 4.6557 39 1 4.3570 1.4621 7.0382 40 1 3.9227 2.0496 5.4152 41 1 2.7529 1.0962 6.3591 42 1 6.1815 -0.7276 4.5712 43 1 5.8134 0.9951 4.3153 44 1 6.4237 0.4400 5.8926 45 1 3.6849 -2.0875 8.7845 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459250188.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:11:13 Heat of formation + Delta-G solvation = 3.940180 kcal Electronic energy + Delta-G solvation = -23312.351723 eV Core-core repulsion = 20137.999945 eV Total energy + Delta-G solvation = -3174.351778 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.51917 -37.87787 -36.51530 -34.51032 -33.16654 -32.55906 -31.20479 -29.95195 -26.38042 -26.17346 -25.01494 -24.15463 -23.37628 -21.20978 -20.09398 -19.52893 -19.05848 -17.67497 -16.65969 -16.17097 -15.44788 -14.98658 -14.75418 -14.55682 -14.40602 -14.01475 -13.75185 -13.52814 -13.42269 -12.85928 -12.73394 -12.59714 -12.29825 -11.99219 -11.83747 -11.78159 -11.34413 -11.29109 -11.09834 -10.90686 -10.64490 -10.56094 -10.32557 -10.19541 -10.07735 -9.94096 -9.06557 -8.91035 -8.73460 -8.42427 -8.24613 -8.10568 -6.54586 -4.08088 2.37212 3.11678 3.32502 3.39169 3.50553 3.61332 4.18466 4.45774 4.56385 4.59541 4.66628 4.85332 5.05793 5.10127 5.12399 5.25136 5.38230 5.50981 5.61563 5.65735 5.69144 5.79153 5.82405 5.84526 6.06932 6.08565 6.10143 6.18625 6.37569 6.43634 6.54832 6.59007 6.66147 6.73034 6.84067 6.88442 7.00810 7.05387 7.20280 7.28415 7.48374 8.12912 8.30324 8.35074 8.86385 8.93650 9.54440 10.82078 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.026369 B = 0.004585 C = 0.004081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.583628 B = 6105.838519 C = 6859.885962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.093 4.093 3 C 0.190 3.810 4 H 0.070 0.930 5 C -0.129 4.129 6 C -0.118 4.118 7 C -0.135 4.135 8 C 0.110 3.890 9 N -0.631 5.631 10 C 0.702 3.298 11 O -0.575 6.575 12 N -0.738 5.738 13 C 0.161 3.839 14 C 0.035 3.965 15 C -0.138 4.138 16 C -0.145 4.145 17 C -0.610 4.610 18 H 0.060 0.940 19 C 0.046 3.954 20 N -0.885 5.885 21 Si 1.048 2.952 22 H -0.299 1.299 23 H -0.278 1.278 24 H -0.288 1.288 25 H 0.085 0.915 26 H 0.095 0.905 27 H 0.116 0.884 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.080 0.920 36 H 0.391 0.609 37 H 0.054 0.946 38 H 0.058 0.942 39 H 0.054 0.946 40 H 0.019 0.981 41 H 0.045 0.955 42 H 0.050 0.950 43 H 0.024 0.976 44 H 0.041 0.959 45 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.694 11.138 -18.943 21.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C -0.112 4.112 3 C 0.087 3.913 4 H 0.088 0.912 5 C -0.167 4.167 6 C -0.156 4.156 7 C -0.174 4.174 8 C -0.013 4.013 9 N -0.370 5.370 10 C 0.403 3.597 11 O -0.453 6.453 12 N -0.394 5.394 13 C 0.038 3.962 14 C 0.034 3.966 15 C -0.196 4.196 16 C -0.202 4.202 17 C -0.647 4.647 18 H 0.079 0.921 19 C -0.162 4.162 20 N -0.517 5.517 21 Si 0.881 3.119 22 H -0.227 1.227 23 H -0.206 1.206 24 H -0.216 1.216 25 H 0.103 0.897 26 H 0.113 0.887 27 H 0.134 0.866 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.228 0.772 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.038 0.962 41 H 0.064 0.936 42 H 0.069 0.931 43 H 0.043 0.957 44 H 0.059 0.941 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.066 10.927 -17.936 21.002 hybrid contribution -0.791 -0.145 -0.897 1.205 sum -0.857 10.782 -18.832 21.717 Atomic orbital electron populations 1.23408 0.95556 1.01143 1.06147 1.22653 0.95739 0.97077 0.95730 1.20079 0.91038 0.96569 0.83620 0.91236 1.21894 0.98642 0.98802 0.97394 1.21504 0.98246 0.97933 0.97871 1.21920 0.98025 1.02765 0.94659 1.21619 0.91541 0.89605 0.98543 1.47428 1.43072 1.26766 1.19715 1.16043 0.80786 0.82508 0.80319 1.90881 1.44025 1.31373 1.79052 1.45757 1.52479 1.23055 1.18155 1.21386 1.00371 0.87768 0.86693 1.18651 0.90312 0.95220 0.92453 1.22189 1.01051 0.96568 0.99779 1.22318 0.99832 0.99306 0.98765 1.21595 1.42136 1.01104 0.99876 0.92149 1.25649 1.00689 0.98445 0.91452 1.70841 1.22109 1.29877 1.28830 0.84228 0.77031 0.76524 0.74086 1.22730 1.20557 1.21595 0.89657 0.88666 0.86626 0.90703 0.91235 0.91797 0.91621 0.90705 0.91284 0.91535 0.90176 0.77236 0.92720 0.92401 0.92666 0.96235 0.93600 0.93051 0.95731 0.94068 0.91745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.02 14.32 29.01 0.42 -2.60 16 2 C -0.09 -1.32 5.81 -36.03 -0.21 -1.53 16 3 C 0.19 2.29 3.22 -68.98 -0.22 2.07 16 4 H 0.07 0.78 7.80 -51.93 -0.41 0.37 16 5 C -0.13 -1.21 5.33 -26.84 -0.14 -1.35 16 6 C -0.12 -0.91 5.89 -26.69 -0.16 -1.07 16 7 C -0.14 -1.13 6.08 -26.61 -0.16 -1.29 16 8 C 0.11 1.13 6.35 -3.71 -0.02 1.10 16 9 N -0.63 -8.50 2.98 -172.49 -0.51 -9.02 16 10 C 0.70 12.31 8.22 -86.91 -0.71 11.60 16 11 O -0.57 -11.90 12.69 5.29 0.07 -11.83 16 12 N -0.74 -12.90 4.88 -65.22 -0.32 -13.21 16 13 C 0.16 3.38 4.51 -4.04 -0.02 3.37 16 14 C 0.04 0.79 0.50 -155.66 -0.08 0.71 16 15 C -0.14 -2.92 7.89 37.16 0.29 -2.63 16 16 C -0.15 -2.97 7.71 37.16 0.29 -2.68 16 17 C -0.61 -16.52 8.41 -34.44 -0.29 -16.81 16 18 H 0.06 1.79 7.99 -52.49 -0.42 1.37 16 19 C 0.05 1.27 5.03 -17.82 -0.09 1.18 16 20 N -0.89 -26.42 13.70 55.43 0.76 -25.67 16 21 Si 1.05 24.81 23.46 -169.99 -3.99 20.82 16 22 H -0.30 -7.26 7.11 56.52 0.40 -6.86 16 23 H -0.28 -6.00 5.77 56.52 0.33 -5.67 16 24 H -0.29 -6.50 6.80 56.52 0.38 -6.11 16 25 H 0.09 1.01 7.85 -52.49 -0.41 0.60 16 26 H 0.09 1.27 8.06 -52.49 -0.42 0.85 16 27 H 0.12 1.87 7.13 -52.49 -0.37 1.50 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.83 5.73 -51.93 -0.30 0.53 16 36 H 0.39 6.00 3.80 -40.82 -0.16 5.84 16 37 H 0.05 1.22 8.14 -51.93 -0.42 0.79 16 38 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 39 H 0.05 1.23 4.51 -51.93 -0.23 1.00 16 40 H 0.02 0.34 7.05 -51.93 -0.37 -0.03 16 41 H 0.04 0.99 8.14 -51.93 -0.42 0.56 16 42 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.02 0.41 6.92 -51.92 -0.36 0.05 16 44 H 0.04 0.87 2.41 -51.93 -0.13 0.75 16 45 H 0.27 8.11 8.73 -40.82 -0.36 7.75 16 LS Contribution 334.19 15.07 5.04 5.04 Total: -1.00 -30.45 334.19 -7.54 -37.99 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -7.47 Total: 5.82 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: -1.11 Total: -9.93 kcal Atomic # 7 Polarization: -47.82 SS G_CDS: -0.07 Total: -47.90 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.07 Total: -11.83 kcal Atomic # 14 Polarization: 24.81 SS G_CDS: -3.99 Total: 20.82 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.45 -7.54 -37.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459250188.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.927 kcal (2) G-P(sol) polarization free energy of solvation -30.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds