Wall clock time and date at job start Tue Mar 31 2020 02:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50705 * 119.99609 * 2 1 4 4 H 1.09004 * 109.70338 * 359.06065 * 3 2 1 5 5 C 1.52752 * 109.51204 * 238.93902 * 3 2 1 6 6 C 1.53037 * 109.38469 * 185.70701 * 5 3 2 7 7 C 1.53044 * 109.53577 * 61.24133 * 6 5 3 8 8 C 1.53188 * 109.31254 * 298.63511 * 7 6 5 9 9 N 1.46924 * 109.58222 * 119.41055 * 3 2 1 10 10 C 1.34782 * 120.63097 * 353.42463 * 9 3 2 11 11 O 1.21583 * 120.00377 * 4.82417 * 10 9 3 12 12 N 1.34781 * 119.99825 * 184.83141 * 10 9 3 13 13 C 1.46500 * 119.99750 * 184.73226 * 12 10 9 14 14 C 1.53003 * 109.46709 * 179.97438 * 13 12 10 15 15 C 1.53001 * 109.47174 * 59.99988 * 14 13 12 16 16 C 1.52998 * 109.47000 * 299.99578 * 14 13 12 17 17 C 1.50697 * 109.46707 * 180.02562 * 14 13 12 18 18 H 1.07999 * 120.00660 * 5.90205 * 17 14 13 19 19 C 1.37879 * 119.99731 * 185.91335 * 17 14 13 20 20 N 1.31516 * 120.00033 * 149.61087 * 19 17 14 21 21 Si 1.86796 * 119.99962 * 329.60203 * 19 17 14 22 22 H 1.48505 * 109.47388 * 180.02562 * 21 19 17 23 23 H 1.48502 * 109.47108 * 60.00730 * 21 19 17 24 24 H 1.48493 * 109.47455 * 300.00543 * 21 19 17 25 25 H 1.07996 * 120.00032 * 5.01308 * 1 2 3 26 26 H 1.08001 * 119.99623 * 185.01188 * 1 2 3 27 27 H 1.07993 * 120.00057 * 180.02562 * 2 1 3 28 28 H 1.09005 * 109.56369 * 65.67036 * 5 3 2 29 29 H 1.08999 * 109.36394 * 305.62258 * 5 3 2 30 30 H 1.09002 * 109.46343 * 301.22116 * 6 5 3 31 31 H 1.09004 * 109.45930 * 181.25770 * 6 5 3 32 32 H 1.08998 * 109.49950 * 178.67993 * 7 6 5 33 33 H 1.08998 * 109.49636 * 58.58651 * 7 6 5 34 34 H 1.09000 * 109.58395 * 294.84543 * 8 7 6 35 35 H 1.09003 * 109.70553 * 174.49179 * 8 7 6 36 36 H 0.96997 * 119.99936 * 4.73227 * 12 10 9 37 37 H 1.09000 * 109.46985 * 60.00174 * 13 12 10 38 38 H 1.09001 * 109.47156 * 299.99370 * 13 12 10 39 39 H 1.08999 * 109.46598 * 173.69111 * 15 14 13 40 40 H 1.08991 * 109.46995 * 293.69040 * 15 14 13 41 41 H 1.09000 * 109.46874 * 53.69398 * 15 14 13 42 42 H 1.08994 * 109.47620 * 301.86799 * 16 14 13 43 43 H 1.09008 * 109.46960 * 61.87478 * 16 14 13 44 44 H 1.09004 * 109.46939 * 181.86989 * 16 14 13 45 45 H 0.97002 * 120.00147 * 354.96871 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 1 1.3586 2.1365 -0.0168 5 6 2.9619 1.3757 -1.2334 6 6 3.8297 2.6340 -1.1584 7 6 4.7186 2.5693 0.0857 8 6 3.8360 2.5154 1.3367 9 7 2.8984 1.3918 1.2059 10 6 2.8100 0.4553 2.1711 11 8 2.0995 -0.5182 2.0104 12 7 3.5091 0.5979 3.3145 13 6 3.4950 -0.4680 4.3195 14 6 4.3626 -0.0570 5.5108 15 6 3.8090 1.2303 6.1250 16 6 5.7985 0.1796 5.0385 17 6 4.3486 -1.1537 6.5443 18 1 3.8577 -2.0915 6.3301 19 6 4.9625 -0.9598 7.7636 20 7 4.5000 -1.5641 8.8362 21 14 6.4514 0.1610 7.8919 22 1 6.9219 0.1999 9.2999 23 1 6.0787 1.5309 7.4561 24 1 7.5374 -0.3570 7.0217 25 1 -0.5400 0.9317 -0.0817 26 1 -0.5399 -0.9318 0.0817 27 1 1.8501 -0.9352 -0.0004 28 1 2.3460 1.4114 -2.1320 29 1 3.6018 0.4938 -1.2652 30 1 3.1891 3.5141 -1.1017 31 1 4.4554 2.6972 -2.0488 32 1 5.3531 3.4547 0.1260 33 1 5.3419 1.6762 0.0415 34 1 3.2787 3.4474 1.4310 35 1 4.4585 2.3709 2.2197 36 1 4.0215 1.4063 3.4720 37 1 3.8899 -1.3849 3.8821 38 1 2.4720 -0.6368 4.6557 39 1 4.3570 1.4621 7.0382 40 1 3.9227 2.0496 5.4152 41 1 2.7529 1.0962 6.3591 42 1 6.1815 -0.7276 4.5712 43 1 5.8134 0.9951 4.3153 44 1 6.4237 0.4400 5.8926 45 1 3.6849 -2.0875 8.7845 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459250188.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:11:12 Heat of formation + Delta-G solvation = -15.619456 kcal Electronic energy + Delta-G solvation = -23313.199892 eV Core-core repulsion = 20137.999945 eV Total energy + Delta-G solvation = -3175.199947 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.71473 -39.18225 -38.01404 -35.76837 -34.51741 -33.93318 -32.85523 -30.81870 -28.02543 -27.68418 -26.60886 -25.64823 -24.25462 -22.27791 -21.29534 -20.82133 -20.56239 -19.09674 -18.44923 -17.37432 -16.71740 -16.45777 -16.14735 -15.66001 -15.50315 -15.18500 -14.85358 -14.70997 -14.55284 -14.32455 -14.22705 -14.06969 -13.95132 -13.58925 -13.27134 -12.97307 -12.61561 -12.43389 -12.13184 -12.04012 -11.89850 -11.85513 -11.71497 -11.66432 -11.47434 -11.42789 -11.01380 -10.67993 -10.26313 -10.13214 -9.67799 -9.40171 -8.77243 -6.30370 1.26214 1.44705 1.53176 1.76028 1.94098 2.15355 2.50177 2.95062 3.03770 3.71196 3.85941 3.97430 4.09065 4.10157 4.19271 4.30015 4.30419 4.42368 4.47485 4.63346 4.63915 4.76488 4.80497 4.83597 4.90622 4.91456 4.94862 5.03652 5.04825 5.06894 5.15447 5.17480 5.24122 5.44953 5.46685 5.55617 5.58638 5.74240 5.77187 5.93838 6.01444 6.03709 6.17860 6.58674 7.00805 7.41316 7.59200 8.58027 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.026369 B = 0.004585 C = 0.004081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.583628 B = 6105.838519 C = 6859.885962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.106 4.106 3 C 0.187 3.813 4 H 0.088 0.912 5 C -0.124 4.124 6 C -0.114 4.114 7 C -0.131 4.131 8 C 0.101 3.899 9 N -0.623 5.623 10 C 0.694 3.306 11 O -0.616 6.616 12 N -0.728 5.728 13 C 0.180 3.820 14 C 0.033 3.967 15 C -0.135 4.135 16 C -0.143 4.143 17 C -0.617 4.617 18 H 0.013 0.987 19 C -0.003 4.003 20 N -0.922 5.922 21 Si 1.086 2.914 22 H -0.311 1.311 23 H -0.234 1.234 24 H -0.267 1.267 25 H 0.107 0.893 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.091 0.909 29 H 0.051 0.949 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.101 0.899 33 H 0.053 0.947 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.405 0.595 37 H 0.033 0.967 38 H 0.027 0.973 39 H 0.047 0.953 40 H 0.063 0.937 41 H 0.029 0.971 42 H 0.044 0.956 43 H 0.068 0.932 44 H 0.040 0.960 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.876 15.358 -21.229 26.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C -0.124 4.124 3 C 0.084 3.916 4 H 0.106 0.894 5 C -0.162 4.162 6 C -0.151 4.151 7 C -0.170 4.170 8 C -0.021 4.021 9 N -0.361 5.361 10 C 0.396 3.604 11 O -0.498 6.498 12 N -0.386 5.386 13 C 0.056 3.944 14 C 0.031 3.969 15 C -0.192 4.192 16 C -0.200 4.200 17 C -0.654 4.654 18 H 0.031 0.969 19 C -0.203 4.203 20 N -0.555 5.555 21 Si 0.912 3.088 22 H -0.240 1.240 23 H -0.159 1.159 24 H -0.194 1.194 25 H 0.125 0.875 26 H 0.105 0.895 27 H 0.103 0.897 28 H 0.109 0.891 29 H 0.070 0.930 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.120 0.880 33 H 0.072 0.928 34 H 0.108 0.892 35 H 0.099 0.901 36 H 0.244 0.756 37 H 0.051 0.949 38 H 0.045 0.955 39 H 0.065 0.935 40 H 0.082 0.918 41 H 0.048 0.952 42 H 0.063 0.937 43 H 0.087 0.913 44 H 0.058 0.942 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.509 15.202 -20.288 25.396 hybrid contribution -1.412 -1.564 -0.274 2.125 sum 0.097 13.638 -20.562 24.674 Atomic orbital electron populations 1.23557 0.95497 1.01818 1.05331 1.22652 0.96113 0.97329 0.96352 1.20286 0.91630 0.95592 0.84063 0.89381 1.21869 0.98453 0.99304 0.96568 1.21514 0.98205 0.97194 0.98220 1.21918 0.97841 1.03303 0.93904 1.21971 0.91459 0.88964 0.99700 1.47501 1.43331 1.26470 1.18806 1.16256 0.80376 0.82888 0.80865 1.90871 1.45618 1.33340 1.79956 1.45373 1.53063 1.22573 1.17600 1.20837 0.98162 0.88246 0.87190 1.18590 0.92492 0.94238 0.91550 1.22094 0.99773 0.96957 1.00393 1.22219 0.97252 1.00803 0.99729 1.21803 1.41060 1.00933 1.01614 0.96870 1.27087 1.02854 0.99409 0.90994 1.70976 1.22288 1.32034 1.30223 0.83799 0.73952 0.77075 0.74013 1.23964 1.15918 1.19383 0.87515 0.89495 0.89684 0.89066 0.93001 0.90219 0.90090 0.88046 0.92799 0.89173 0.90067 0.75567 0.94900 0.95464 0.93459 0.91820 0.95190 0.93724 0.91334 0.94161 0.93573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -5.94 14.32 67.77 0.97 -4.97 16 2 C -0.11 -3.00 5.81 25.64 0.15 -2.85 16 3 C 0.19 4.09 3.22 44.08 0.14 4.24 16 4 H 0.09 1.65 7.80 -2.39 -0.02 1.63 16 5 C -0.12 -1.99 5.33 30.52 0.16 -1.82 16 6 C -0.11 -1.25 5.89 30.62 0.18 -1.07 16 7 C -0.13 -1.63 6.08 30.67 0.19 -1.44 16 8 C 0.10 1.63 6.35 86.36 0.55 2.18 16 9 N -0.62 -15.37 2.98 -817.88 -2.44 -17.81 16 10 C 0.69 23.89 8.22 179.05 1.47 25.36 16 11 O -0.62 -26.26 12.69 -3.98 -0.05 -26.31 16 12 N -0.73 -24.37 4.88 -478.52 -2.33 -26.70 16 13 C 0.18 7.73 4.51 86.38 0.39 8.12 16 14 C 0.03 1.44 0.50 -52.93 -0.03 1.42 16 15 C -0.13 -5.38 7.89 71.98 0.57 -4.81 16 16 C -0.14 -5.39 7.71 71.98 0.55 -4.83 16 17 C -0.62 -34.55 8.41 25.60 0.22 -34.34 16 18 H 0.01 0.83 7.99 -2.91 -0.02 0.80 16 19 C 0.00 -0.15 5.03 84.66 0.43 0.28 16 20 N -0.92 -57.25 13.70 21.45 0.29 -56.96 16 21 Si 1.09 48.53 23.46 68.60 1.61 50.14 16 22 H -0.31 -14.46 7.11 99.48 0.71 -13.75 16 23 H -0.23 -8.85 5.77 99.48 0.57 -8.28 16 24 H -0.27 -11.02 6.80 99.48 0.68 -10.34 16 25 H 0.11 2.34 7.85 -2.91 -0.02 2.31 16 26 H 0.09 2.39 8.06 -2.91 -0.02 2.36 16 27 H 0.09 2.91 7.13 -2.91 -0.02 2.89 16 28 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 29 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.08 1.29 5.73 -2.39 -0.01 1.28 16 36 H 0.40 10.96 3.80 -92.71 -0.35 10.60 16 37 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.05 1.96 4.51 -2.39 -0.01 1.95 16 40 H 0.06 1.96 7.05 -2.39 -0.02 1.94 16 41 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.07 1.97 6.92 -2.38 -0.02 1.95 16 44 H 0.04 1.54 2.41 -2.38 -0.01 1.53 16 45 H 0.26 16.20 8.73 -92.71 -0.81 15.39 16 Total: -1.00 -71.42 334.19 3.43 -67.98 By element: Atomic # 1 Polarization: 23.80 SS G_CDS: 0.41 Total: 24.21 kcal Atomic # 6 Polarization: -20.49 SS G_CDS: 5.94 Total: -14.55 kcal Atomic # 7 Polarization: -96.99 SS G_CDS: -4.48 Total: -101.47 kcal Atomic # 8 Polarization: -26.26 SS G_CDS: -0.05 Total: -26.31 kcal Atomic # 14 Polarization: 48.53 SS G_CDS: 1.61 Total: 50.14 kcal Total: -71.42 3.43 -67.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459250188.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.364 kcal (2) G-P(sol) polarization free energy of solvation -71.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds