Wall clock time and date at job start Tue Mar 31 2020 02:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50698 * 120.00210 * 2 1 4 4 C 1.53047 * 109.45654 * 239.99685 * 3 2 1 5 5 C 1.53189 * 109.30930 * 178.62610 * 4 3 2 6 6 N 1.46922 * 108.77606 * 54.63896 * 5 4 3 7 7 C 1.34779 * 120.63268 * 126.36799 * 6 5 4 8 8 O 1.21587 * 119.99921 * 185.22792 * 7 6 5 9 9 N 1.34768 * 119.99965 * 5.22164 * 7 6 5 10 10 C 1.46505 * 120.00011 * 175.01971 * 9 7 6 11 11 C 1.53000 * 109.46887 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47111 * 299.99850 * 11 10 9 13 13 C 1.53000 * 109.47588 * 59.99866 * 11 10 9 14 14 C 1.50704 * 109.46804 * 179.97438 * 11 10 9 15 15 H 1.07998 * 119.99857 * 359.97438 * 14 11 10 16 16 C 1.37884 * 119.99979 * 180.02562 * 14 11 10 17 17 N 1.31518 * 119.99903 * 359.97438 * 16 14 11 18 18 Si 1.86792 * 119.99954 * 180.02562 * 16 14 11 19 19 H 1.48497 * 109.47444 * 59.99885 * 18 16 14 20 20 H 1.48499 * 109.47176 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47296 * 299.99598 * 18 16 14 22 22 C 1.46926 * 118.73872 * 306.64154 * 6 5 4 23 23 C 1.52758 * 109.00901 * 53.30843 * 22 6 5 24 24 H 1.07998 * 120.00389 * 180.02562 * 1 2 3 25 25 H 1.08005 * 119.99634 * 0.02562 * 1 2 3 26 26 H 1.08005 * 119.99634 * 179.97438 * 2 1 3 27 27 H 1.08999 * 109.45799 * 359.96648 * 3 2 1 28 28 H 1.09002 * 109.49549 * 58.67616 * 4 3 2 29 29 H 1.08995 * 109.52643 * 298.59783 * 4 3 2 30 30 H 1.08996 * 109.58878 * 294.84526 * 5 4 3 31 31 H 1.08997 * 109.70372 * 174.49374 * 5 4 3 32 32 H 0.97005 * 120.00344 * 355.02046 * 9 7 6 33 33 H 1.08991 * 109.46926 * 60.00299 * 10 9 7 34 34 H 1.08994 * 109.47101 * 299.99979 * 10 9 7 35 35 H 1.08997 * 109.47492 * 60.00572 * 12 11 10 36 36 H 1.09004 * 109.47019 * 180.02562 * 12 11 10 37 37 H 1.08996 * 109.46982 * 300.00084 * 12 11 10 38 38 H 1.09011 * 109.46779 * 59.99784 * 13 11 10 39 39 H 1.08994 * 109.47357 * 179.97438 * 13 11 10 40 40 H 1.09000 * 109.47374 * 300.00244 * 13 11 10 41 41 H 0.96999 * 119.99991 * 180.02562 * 17 16 14 42 42 H 1.08996 * 109.58820 * 173.14725 * 22 6 5 43 43 H 1.08999 * 109.58519 * 293.56821 * 22 6 5 44 44 H 1.09006 * 109.56654 * 185.55577 * 23 22 6 45 45 H 1.08994 * 109.38993 * 65.51777 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9434 1.3857 -1.2497 5 6 3.6815 2.7279 -1.2637 6 7 4.4144 2.8779 0.0008 7 6 5.7350 3.1469 0.0014 8 8 6.3493 3.1747 1.0504 9 7 6.3747 3.3851 -1.1606 10 6 7.7843 3.7844 -1.1523 11 6 8.2641 3.9914 -2.5903 12 6 8.1085 2.6858 -3.3728 13 6 7.4276 5.0868 -3.2545 14 6 9.7139 4.4028 -2.5818 15 1 10.2402 4.5067 -1.6444 16 6 10.3681 4.6476 -3.7706 17 7 9.7270 4.5216 -4.9120 18 14 12.1652 5.1568 -3.7600 19 1 12.9773 4.0933 -3.1160 20 1 12.6310 5.3578 -5.1557 21 1 12.3163 6.4236 -3.0000 22 6 3.6814 2.7229 1.2647 23 6 2.9421 1.3862 1.2505 24 1 -0.5401 -0.9353 0.0004 25 1 -0.5400 0.9354 -0.0004 26 1 1.8500 -0.9354 0.0004 27 1 1.3551 2.1334 -0.0006 28 1 2.3194 1.3043 -2.1397 29 1 3.6683 0.5719 -1.2380 30 1 2.9617 3.5398 -1.3674 31 1 4.3829 2.7529 -2.0977 32 1 5.9019 3.2921 -2.0025 33 1 8.3801 3.0042 -0.6788 34 1 7.8951 4.7147 -0.5953 35 1 7.0598 2.3887 -3.3790 36 1 8.4508 2.8332 -4.3971 37 1 8.7045 1.9055 -2.8996 38 1 7.5385 6.0170 -2.6970 39 1 7.7697 5.2345 -4.2788 40 1 6.3789 4.7898 -3.2607 41 1 10.1873 4.6934 -5.7483 42 1 4.3830 2.7420 2.0987 43 1 2.9615 3.5344 1.3715 44 1 2.3172 1.3052 2.1400 45 1 3.6666 0.5721 1.2396 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459260461.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:28 Heat of formation + Delta-G solvation = -19.812011 kcal Electronic energy + Delta-G solvation = -22712.785309 eV Core-core repulsion = 19537.403560 eV Total energy + Delta-G solvation = -3175.381750 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.19292 -38.02921 -36.32729 -34.62324 -33.33492 -31.44639 -30.99604 -30.34488 -25.89832 -25.70720 -25.32118 -24.37055 -23.18851 -21.24864 -20.05357 -19.36070 -18.84160 -17.93259 -15.98476 -15.67123 -15.36432 -15.20804 -14.66512 -14.61516 -14.31999 -13.91037 -13.72882 -13.50364 -12.91417 -12.82962 -12.57557 -12.41928 -12.20810 -12.08851 -11.38891 -11.35748 -11.18612 -11.02102 -11.00533 -10.82543 -10.70993 -10.58873 -10.36066 -10.18269 -9.71834 -9.60839 -9.51852 -9.27191 -8.77883 -8.64261 -8.37898 -8.08714 -6.00305 -4.10118 2.02849 2.99144 3.31671 3.35680 3.39825 3.62903 4.29999 4.43381 4.46119 4.63107 4.73505 4.99977 5.00654 5.17188 5.21641 5.26402 5.36204 5.46531 5.55334 5.68806 5.74489 5.77508 5.90145 5.92656 6.14824 6.23824 6.37627 6.39754 6.52490 6.53667 6.66888 6.83063 6.84035 6.94887 7.05415 7.13462 7.30324 7.41946 7.57811 7.71519 8.03066 8.14316 8.39916 8.46526 8.89543 9.06983 9.55446 11.01170 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.036162 B = 0.003491 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.105734 B = 8017.789500 C = 8444.265253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.143 4.143 3 C -0.061 4.061 4 C -0.126 4.126 5 C 0.112 3.888 6 N -0.635 5.635 7 C 0.702 3.298 8 O -0.599 6.599 9 N -0.734 5.734 10 C 0.149 3.851 11 C 0.057 3.943 12 C -0.129 4.129 13 C -0.129 4.129 14 C -0.505 4.505 15 H 0.057 0.943 16 C 0.066 3.934 17 N -0.887 5.887 18 Si 0.894 3.106 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 C 0.131 3.869 23 C -0.126 4.126 24 H 0.095 0.905 25 H 0.095 0.905 26 H 0.107 0.893 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.393 0.607 33 H 0.052 0.948 34 H 0.051 0.949 35 H 0.004 0.996 36 H 0.085 0.915 37 H 0.026 0.974 38 H 0.026 0.974 39 H 0.085 0.915 40 H 0.004 0.996 41 H 0.260 0.740 42 H 0.094 0.906 43 H 0.060 0.940 44 H 0.073 0.927 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.540 -6.264 5.692 19.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.161 4.161 3 C -0.079 4.079 4 C -0.164 4.164 5 C -0.012 4.012 6 N -0.374 5.374 7 C 0.403 3.597 8 O -0.478 6.478 9 N -0.390 5.390 10 C 0.026 3.974 11 C 0.056 3.944 12 C -0.187 4.187 13 C -0.187 4.187 14 C -0.544 4.544 15 H 0.075 0.925 16 C -0.135 4.135 17 N -0.526 5.526 18 Si 0.722 3.278 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.203 1.203 22 C 0.007 3.993 23 C -0.164 4.164 24 H 0.113 0.887 25 H 0.113 0.887 26 H 0.125 0.875 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.099 0.901 32 H 0.230 0.770 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.023 0.977 36 H 0.104 0.896 37 H 0.046 0.954 38 H 0.046 0.954 39 H 0.104 0.896 40 H 0.023 0.977 41 H 0.070 0.930 42 H 0.112 0.888 43 H 0.078 0.922 44 H 0.092 0.908 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -16.997 -6.180 6.244 19.133 hybrid contribution 0.645 0.124 -0.517 0.836 sum -16.352 -6.056 5.727 18.354 Atomic orbital electron populations 1.23832 0.95905 1.01713 1.01885 1.22972 0.95845 0.98289 0.99017 1.20354 0.96677 0.95551 0.95352 1.21930 0.98810 0.97964 0.97723 1.21581 0.96003 0.97094 0.86486 1.47260 1.07192 1.76335 1.06644 1.15980 0.80826 0.78013 0.84878 1.90861 1.65587 1.60223 1.31130 1.45681 1.14138 1.72743 1.06434 1.21585 0.77182 0.98343 1.00277 1.18353 0.95179 0.92878 0.88011 1.21814 0.95652 0.97046 1.04165 1.21820 0.94742 0.97986 1.04159 1.20958 0.94535 1.46122 0.92786 0.92452 1.24877 0.98018 0.95112 0.95492 1.69796 1.36094 1.49364 0.97303 0.86626 0.85138 0.79182 0.76870 1.20287 1.21355 1.20282 1.21276 0.95244 0.95967 0.86805 1.21874 0.98610 0.98516 0.97417 0.88652 0.88654 0.87467 0.90670 0.90660 0.91163 0.91535 0.90103 0.76985 0.92936 0.93062 0.97712 0.89633 0.95440 0.95442 0.89623 0.97688 0.92979 0.88785 0.92198 0.90839 0.91318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.42 14.32 29.01 0.42 -1.01 16 2 C -0.14 -1.15 8.77 -36.03 -0.32 -1.47 16 3 C -0.06 -0.53 2.44 -91.73 -0.22 -0.75 16 4 C -0.13 -1.18 5.34 -26.61 -0.14 -1.32 16 5 C 0.11 1.25 6.39 -3.71 -0.02 1.22 16 6 N -0.64 -9.02 2.98 -178.78 -0.53 -9.55 16 7 C 0.70 13.13 8.30 -86.92 -0.72 12.41 16 8 O -0.60 -13.41 15.77 5.29 0.08 -13.33 16 9 N -0.73 -13.77 4.87 -65.23 -0.32 -14.09 16 10 C 0.15 3.28 4.51 -4.04 -0.02 3.26 16 11 C 0.06 1.33 0.50 -155.66 -0.08 1.25 16 12 C -0.13 -2.94 8.08 37.16 0.30 -2.64 16 13 C -0.13 -2.94 8.08 37.16 0.30 -2.64 16 14 C -0.51 -13.37 8.01 -34.44 -0.28 -13.64 16 15 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 16 C 0.07 1.75 5.15 -17.82 -0.09 1.66 16 17 N -0.89 -23.70 9.35 55.43 0.52 -23.18 16 18 Si 0.89 20.85 29.54 -169.99 -5.02 15.82 16 19 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 20 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 22 C 0.13 1.57 6.41 -3.93 -0.03 1.54 16 23 C -0.13 -1.22 5.33 -26.83 -0.14 -1.36 16 24 H 0.10 0.60 8.06 -52.49 -0.42 0.18 16 25 H 0.10 0.64 7.83 -52.48 -0.41 0.23 16 26 H 0.11 0.85 8.06 -52.48 -0.42 0.43 16 27 H 0.07 0.62 7.78 -51.93 -0.40 0.21 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.94 5.64 -51.93 -0.29 0.64 16 32 H 0.39 6.67 3.65 -40.82 -0.15 6.52 16 33 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.00 0.08 6.86 -51.93 -0.36 -0.28 16 36 H 0.09 2.14 6.07 -51.93 -0.32 1.82 16 37 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.03 0.62 8.14 -51.92 -0.42 0.19 16 39 H 0.09 2.14 6.07 -51.93 -0.32 1.82 16 40 H 0.00 0.08 6.86 -51.93 -0.36 -0.27 16 41 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 42 H 0.09 1.31 6.99 -51.93 -0.36 0.95 16 43 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 346.81 15.07 5.23 5.23 Total: -1.00 -29.16 346.81 -8.66 -37.82 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -7.58 Total: 4.76 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: -1.04 Total: -3.48 kcal Atomic # 7 Polarization: -46.49 SS G_CDS: -0.33 Total: -46.83 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: 0.08 Total: -13.33 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.16 -8.66 -37.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459260461.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.009 kcal (2) G-P(sol) polarization free energy of solvation -29.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds