Wall clock time and date at job start Tue Mar 31 2020 02:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50698 * 120.00210 * 2 1 4 4 C 1.53047 * 109.45654 * 239.99685 * 3 2 1 5 5 C 1.53189 * 109.30930 * 178.62610 * 4 3 2 6 6 N 1.46922 * 108.77606 * 54.63896 * 5 4 3 7 7 C 1.34779 * 120.63268 * 126.36799 * 6 5 4 8 8 O 1.21587 * 119.99921 * 185.22792 * 7 6 5 9 9 N 1.34768 * 119.99965 * 5.22164 * 7 6 5 10 10 C 1.46505 * 120.00011 * 175.01971 * 9 7 6 11 11 C 1.53000 * 109.46887 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47111 * 299.99850 * 11 10 9 13 13 C 1.53000 * 109.47588 * 59.99866 * 11 10 9 14 14 C 1.50704 * 109.46804 * 179.97438 * 11 10 9 15 15 H 1.07998 * 119.99857 * 359.97438 * 14 11 10 16 16 C 1.37884 * 119.99979 * 180.02562 * 14 11 10 17 17 N 1.31518 * 119.99903 * 359.97438 * 16 14 11 18 18 Si 1.86792 * 119.99954 * 180.02562 * 16 14 11 19 19 H 1.48497 * 109.47444 * 59.99885 * 18 16 14 20 20 H 1.48499 * 109.47176 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47296 * 299.99598 * 18 16 14 22 22 C 1.46926 * 118.73872 * 306.64154 * 6 5 4 23 23 C 1.52758 * 109.00901 * 53.30843 * 22 6 5 24 24 H 1.07998 * 120.00389 * 180.02562 * 1 2 3 25 25 H 1.08005 * 119.99634 * 0.02562 * 1 2 3 26 26 H 1.08005 * 119.99634 * 179.97438 * 2 1 3 27 27 H 1.08999 * 109.45799 * 359.96648 * 3 2 1 28 28 H 1.09002 * 109.49549 * 58.67616 * 4 3 2 29 29 H 1.08995 * 109.52643 * 298.59783 * 4 3 2 30 30 H 1.08996 * 109.58878 * 294.84526 * 5 4 3 31 31 H 1.08997 * 109.70372 * 174.49374 * 5 4 3 32 32 H 0.97005 * 120.00344 * 355.02046 * 9 7 6 33 33 H 1.08991 * 109.46926 * 60.00299 * 10 9 7 34 34 H 1.08994 * 109.47101 * 299.99979 * 10 9 7 35 35 H 1.08997 * 109.47492 * 60.00572 * 12 11 10 36 36 H 1.09004 * 109.47019 * 180.02562 * 12 11 10 37 37 H 1.08996 * 109.46982 * 300.00084 * 12 11 10 38 38 H 1.09011 * 109.46779 * 59.99784 * 13 11 10 39 39 H 1.08994 * 109.47357 * 179.97438 * 13 11 10 40 40 H 1.09000 * 109.47374 * 300.00244 * 13 11 10 41 41 H 0.96999 * 119.99991 * 180.02562 * 17 16 14 42 42 H 1.08996 * 109.58820 * 173.14725 * 22 6 5 43 43 H 1.08999 * 109.58519 * 293.56821 * 22 6 5 44 44 H 1.09006 * 109.56654 * 185.55577 * 23 22 6 45 45 H 1.08994 * 109.38993 * 65.51777 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9434 1.3857 -1.2497 5 6 3.6815 2.7279 -1.2637 6 7 4.4144 2.8779 0.0008 7 6 5.7350 3.1469 0.0014 8 8 6.3493 3.1747 1.0504 9 7 6.3747 3.3851 -1.1606 10 6 7.7843 3.7844 -1.1523 11 6 8.2641 3.9914 -2.5903 12 6 8.1085 2.6858 -3.3728 13 6 7.4276 5.0868 -3.2545 14 6 9.7139 4.4028 -2.5818 15 1 10.2402 4.5067 -1.6444 16 6 10.3681 4.6476 -3.7706 17 7 9.7270 4.5216 -4.9120 18 14 12.1652 5.1568 -3.7600 19 1 12.9773 4.0933 -3.1160 20 1 12.6310 5.3578 -5.1557 21 1 12.3163 6.4236 -3.0000 22 6 3.6814 2.7229 1.2647 23 6 2.9421 1.3862 1.2505 24 1 -0.5401 -0.9353 0.0004 25 1 -0.5400 0.9354 -0.0004 26 1 1.8500 -0.9354 0.0004 27 1 1.3551 2.1334 -0.0006 28 1 2.3194 1.3043 -2.1397 29 1 3.6683 0.5719 -1.2380 30 1 2.9617 3.5398 -1.3674 31 1 4.3829 2.7529 -2.0977 32 1 5.9019 3.2921 -2.0025 33 1 8.3801 3.0042 -0.6788 34 1 7.8951 4.7147 -0.5953 35 1 7.0598 2.3887 -3.3790 36 1 8.4508 2.8332 -4.3971 37 1 8.7045 1.9055 -2.8996 38 1 7.5385 6.0170 -2.6970 39 1 7.7697 5.2345 -4.2788 40 1 6.3789 4.7898 -3.2607 41 1 10.1873 4.6934 -5.7483 42 1 4.3830 2.7420 2.0987 43 1 2.9615 3.5344 1.3715 44 1 2.3172 1.3052 2.1400 45 1 3.6666 0.5721 1.2396 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459260461.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:10:28 Heat of formation + Delta-G solvation = -35.304374 kcal Electronic energy + Delta-G solvation = -22713.457109 eV Core-core repulsion = 19537.403560 eV Total energy + Delta-G solvation = -3176.053549 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.47725 -39.18152 -38.03264 -35.63471 -34.99339 -32.93254 -31.88641 -31.61485 -27.56973 -27.52325 -27.01184 -25.67641 -24.12198 -22.31823 -20.74970 -20.61671 -20.53519 -19.23973 -17.81527 -17.15036 -16.70495 -16.62078 -15.90910 -15.44244 -15.38925 -15.17229 -15.05026 -14.85879 -14.46626 -14.27653 -14.03564 -13.52203 -13.27428 -13.20235 -13.08275 -12.93884 -12.67031 -12.61612 -12.25203 -12.22969 -12.11992 -11.80905 -11.68275 -11.48888 -11.43000 -11.28999 -11.04612 -10.71467 -10.39500 -10.14535 -10.10374 -9.41682 -8.01844 -6.17480 1.44932 1.45725 1.46196 1.52438 1.73212 2.16636 2.46481 3.05232 3.21699 3.76585 3.80975 3.94268 4.16580 4.33219 4.38092 4.40845 4.47375 4.52606 4.55453 4.68101 4.72387 4.84756 4.89543 4.95173 4.96232 5.04134 5.04720 5.11294 5.14722 5.15833 5.19446 5.38246 5.41819 5.60047 5.65973 5.66956 5.67844 5.81978 5.93304 6.00793 6.14805 6.21609 6.44038 6.86188 7.03465 7.50030 7.60554 8.97156 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.036162 B = 0.003491 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.105734 B = 8017.789500 C = 8444.265253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.157 4.157 3 C -0.055 4.055 4 C -0.121 4.121 5 C 0.106 3.894 6 N -0.627 5.627 7 C 0.696 3.304 8 O -0.642 6.642 9 N -0.727 5.727 10 C 0.167 3.833 11 C 0.053 3.947 12 C -0.118 4.118 13 C -0.118 4.118 14 C -0.531 4.531 15 H 0.044 0.956 16 C 0.029 3.971 17 N -0.899 5.899 18 Si 0.946 3.054 19 H -0.278 1.278 20 H -0.282 1.282 21 H -0.277 1.277 22 C 0.126 3.874 23 C -0.118 4.118 24 H 0.104 0.896 25 H 0.104 0.896 26 H 0.104 0.896 27 H 0.089 0.911 28 H 0.095 0.905 29 H 0.055 0.945 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.403 0.597 33 H 0.032 0.968 34 H 0.034 0.966 35 H 0.033 0.967 36 H 0.064 0.936 37 H 0.016 0.984 38 H 0.018 0.982 39 H 0.064 0.936 40 H 0.034 0.966 41 H 0.261 0.739 42 H 0.069 0.931 43 H 0.083 0.917 44 H 0.092 0.908 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.851 -6.522 5.279 21.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.175 4.175 3 C -0.073 4.073 4 C -0.159 4.159 5 C -0.017 4.017 6 N -0.365 5.365 7 C 0.398 3.602 8 O -0.525 6.525 9 N -0.385 5.385 10 C 0.042 3.958 11 C 0.052 3.948 12 C -0.176 4.176 13 C -0.176 4.176 14 C -0.569 4.569 15 H 0.062 0.938 16 C -0.170 4.170 17 N -0.538 5.538 18 Si 0.772 3.228 19 H -0.203 1.203 20 H -0.207 1.207 21 H -0.202 1.202 22 C 0.003 3.997 23 C -0.156 4.156 24 H 0.122 0.878 25 H 0.122 0.878 26 H 0.122 0.878 27 H 0.107 0.893 28 H 0.114 0.886 29 H 0.074 0.926 30 H 0.108 0.892 31 H 0.094 0.906 32 H 0.242 0.758 33 H 0.051 0.949 34 H 0.053 0.947 35 H 0.052 0.948 36 H 0.083 0.917 37 H 0.035 0.965 38 H 0.037 0.963 39 H 0.083 0.917 40 H 0.053 0.947 41 H 0.070 0.930 42 H 0.087 0.913 43 H 0.101 0.899 44 H 0.110 0.890 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -19.370 -6.454 5.808 21.227 hybrid contribution 1.275 0.181 -0.360 1.337 sum -18.095 -6.272 5.448 19.911 Atomic orbital electron populations 1.24004 0.95615 1.02607 1.00062 1.22899 0.96158 0.97811 1.00653 1.20309 0.96463 0.96504 0.94059 1.21902 0.98684 0.96175 0.99144 1.21861 0.96129 0.99072 0.84599 1.47348 1.05674 1.74696 1.08786 1.16156 0.82209 0.77932 0.83952 1.90829 1.67083 1.62077 1.32505 1.45394 1.12920 1.72969 1.07207 1.21130 0.78851 0.96891 0.98901 1.18344 0.94086 0.93448 0.88875 1.21650 0.97234 0.96325 1.02394 1.21653 0.96288 0.97328 1.02354 1.21244 0.96333 1.46863 0.92482 0.93771 1.25443 1.01136 0.95179 0.95290 1.69894 1.37030 1.49379 0.97448 0.85812 0.81369 0.78645 0.76952 1.20342 1.20695 1.20245 1.21469 0.94955 0.98273 0.84994 1.21808 0.98401 0.96253 0.99136 0.87796 0.87771 0.87829 0.89313 0.88645 0.92621 0.89195 0.90568 0.75750 0.94919 0.94707 0.94784 0.91700 0.96479 0.96305 0.91726 0.94679 0.92960 0.91289 0.89885 0.88997 0.93041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.09 14.32 67.78 0.97 -1.12 16 2 C -0.16 -2.11 8.77 25.65 0.22 -1.89 16 3 C -0.05 -0.79 2.44 -11.51 -0.03 -0.82 16 4 C -0.12 -1.95 5.34 30.67 0.16 -1.78 16 5 C 0.11 2.08 6.39 86.36 0.55 2.63 16 6 N -0.63 -17.01 2.98 -837.79 -2.50 -19.51 16 7 C 0.70 25.98 8.30 179.06 1.49 27.47 16 8 O -0.64 -29.46 15.77 -3.99 -0.06 -29.52 16 9 N -0.73 -26.98 4.87 -478.55 -2.33 -29.31 16 10 C 0.17 7.46 4.51 86.38 0.39 7.85 16 11 C 0.05 2.51 0.50 -52.93 -0.03 2.48 16 12 C -0.12 -5.35 8.08 71.98 0.58 -4.76 16 13 C -0.12 -5.31 8.08 71.98 0.58 -4.73 16 14 C -0.53 -28.51 8.01 25.60 0.21 -28.30 16 15 H 0.04 2.42 7.74 -2.91 -0.02 2.40 16 16 C 0.03 1.56 5.15 84.66 0.44 1.99 16 17 N -0.90 -48.03 9.35 21.45 0.20 -47.83 16 18 Si 0.95 42.89 29.54 68.60 2.03 44.92 16 19 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 20 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 21 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 22 C 0.13 2.85 6.41 86.22 0.55 3.41 16 23 C -0.12 -2.06 5.33 30.53 0.16 -1.90 16 24 H 0.10 0.99 8.06 -2.91 -0.02 0.97 16 25 H 0.10 1.00 7.83 -2.91 -0.02 0.97 16 26 H 0.10 1.46 8.06 -2.91 -0.02 1.43 16 27 H 0.09 1.09 7.78 -2.39 -0.02 1.07 16 28 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.08 1.57 5.64 -2.39 -0.01 1.56 16 32 H 0.40 13.04 3.65 -92.70 -0.34 12.70 16 33 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.03 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.03 1.29 6.86 -2.39 -0.02 1.27 16 36 H 0.06 3.23 6.07 -2.38 -0.01 3.21 16 37 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 39 H 0.06 3.20 6.07 -2.39 -0.01 3.18 16 40 H 0.03 1.31 6.86 -2.39 -0.02 1.30 16 41 H 0.26 13.43 8.31 -92.71 -0.77 12.66 16 42 H 0.07 1.93 6.99 -2.39 -0.02 1.92 16 43 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 45 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -63.41 346.81 4.20 -59.21 By element: Atomic # 1 Polarization: 20.91 SS G_CDS: 0.61 Total: 21.52 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: 6.25 Total: 0.52 kcal Atomic # 7 Polarization: -92.02 SS G_CDS: -4.62 Total: -96.64 kcal Atomic # 8 Polarization: -29.46 SS G_CDS: -0.06 Total: -29.52 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -63.41 4.20 -59.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459260461.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.903 kcal (2) G-P(sol) polarization free energy of solvation -63.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds