Wall clock time and date at job start Tue Mar 31 2020 03:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50701 * 119.99880 * 2 1 4 4 C 1.53002 * 109.46957 * 124.99953 * 3 2 1 5 5 H 1.08999 * 109.47364 * 305.00368 * 4 3 2 6 6 C 1.52999 * 109.47105 * 184.99955 * 4 3 2 7 7 C 1.53001 * 109.47277 * 174.99951 * 6 4 3 8 8 N 1.46500 * 109.47205 * 65.00508 * 4 3 2 9 9 C 1.34777 * 120.00085 * 205.00384 * 8 4 3 10 10 O 1.21584 * 119.99927 * 355.69048 * 9 8 4 11 11 N 1.34779 * 119.99857 * 175.69657 * 9 8 4 12 12 C 1.46926 * 120.62532 * 184.95705 * 11 9 8 13 13 C 1.52762 * 109.00670 * 233.58097 * 12 11 9 14 14 C 1.53040 * 109.38287 * 305.59221 * 13 12 11 15 15 C 1.50705 * 109.44727 * 181.25517 * 14 13 12 16 16 H 1.07997 * 119.99717 * 239.93703 * 15 14 13 17 17 C 1.37871 * 120.00481 * 59.93652 * 15 14 13 18 18 N 1.31522 * 119.99541 * 0.02562 * 17 15 14 19 19 Si 1.86791 * 120.00443 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47308 * 60.00043 * 19 17 15 21 21 H 1.48501 * 109.47467 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47070 * 299.99943 * 19 17 15 23 23 C 1.53035 * 109.54209 * 61.24171 * 14 13 12 24 24 C 1.46925 * 120.63101 * 5.23730 * 11 9 8 25 25 H 1.07994 * 120.00237 * 359.97438 * 1 2 3 26 26 H 1.08005 * 119.99285 * 179.72581 * 1 2 3 27 27 H 1.07996 * 120.00260 * 179.97438 * 2 1 3 28 28 H 1.08998 * 109.47540 * 245.00248 * 3 2 1 29 29 H 1.08998 * 109.46848 * 5.00280 * 3 2 1 30 30 H 1.08994 * 109.47449 * 295.00505 * 6 4 3 31 31 H 1.09002 * 109.47059 * 55.00352 * 6 4 3 32 32 H 1.09002 * 109.46749 * 60.00211 * 7 6 4 33 33 H 1.09000 * 109.46984 * 180.02562 * 7 6 4 34 34 H 1.08994 * 109.47333 * 300.00624 * 7 6 4 35 35 H 0.97009 * 119.99994 * 24.99205 * 8 4 3 36 36 H 1.08991 * 109.59041 * 353.41583 * 12 11 9 37 37 H 1.09006 * 109.58483 * 113.84424 * 12 11 9 38 38 H 1.09000 * 109.56217 * 185.56009 * 13 12 11 39 39 H 1.09001 * 109.38387 * 65.51970 * 13 12 11 40 40 H 1.09001 * 109.46442 * 301.21422 * 14 13 12 41 41 H 0.97005 * 120.00154 * 180.02562 * 18 17 15 42 42 H 1.08992 * 109.50232 * 178.68070 * 23 14 13 43 43 H 1.09006 * 109.52521 * 58.59765 * 23 14 13 44 44 H 1.09005 * 109.58606 * 246.15636 * 24 11 9 45 45 H 1.08993 * 109.58847 * 6.44176 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1817 5 1 2.4883 1.1468 2.1060 6 6 3.7091 2.7046 1.2553 7 6 4.5856 2.7755 2.5074 8 7 4.0547 0.2970 1.0001 9 6 4.6912 -0.2171 2.0712 10 8 4.4764 0.2332 3.1799 11 7 5.5660 -1.2302 1.9130 12 6 6.1857 -1.8729 3.0798 13 6 7.7038 -1.8545 2.9102 14 6 8.0728 -2.4942 1.5697 15 6 9.5718 -2.5047 1.4146 16 1 10.0324 -1.9885 0.5854 17 6 10.3551 -3.1734 2.3312 18 7 9.7941 -3.8025 3.3408 19 14 12.2131 -3.1858 2.1393 20 1 12.7243 -1.7921 2.1796 21 1 12.8200 -3.9683 3.2459 22 1 12.5723 -3.8074 0.8393 23 6 7.4478 -1.6884 0.4287 24 6 5.9225 -1.7086 0.5704 25 1 -0.5400 0.9352 0.0004 26 1 -0.5399 -0.9354 -0.0045 27 1 1.8500 -0.9353 0.0004 28 1 2.6212 1.4027 -0.9314 29 1 1.3585 2.1316 0.0896 30 1 4.3273 2.8536 0.3701 31 1 2.9467 3.4822 1.3011 32 1 5.3481 1.9979 2.4616 33 1 5.0655 3.7528 2.5600 34 1 3.9674 2.6265 3.3926 35 1 4.2716 -0.0192 0.1091 36 1 5.9139 -1.3287 3.9842 37 1 5.8416 -2.9046 3.1544 38 1 8.1684 -2.4154 3.7211 39 1 8.0576 -0.8238 2.9311 40 1 7.6976 -3.5172 1.5399 41 1 10.3452 -4.2726 3.9859 42 1 7.7303 -2.1309 -0.5265 43 1 7.8036 -0.6590 0.4722 44 1 5.5565 -2.7266 0.4361 45 1 5.4751 -1.0574 -0.1804 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000546667532.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:59 Heat of formation + Delta-G solvation = -23.082798 kcal Electronic energy + Delta-G solvation = -22964.791159 eV Core-core repulsion = 19789.267577 eV Total energy + Delta-G solvation = -3175.523582 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.16276 -37.65401 -36.25267 -33.84756 -33.60888 -32.13190 -30.86370 -29.99023 -28.58069 -26.07185 -23.91313 -23.06401 -22.29301 -20.97895 -20.13782 -19.83814 -18.87443 -17.56609 -16.44378 -16.17681 -15.41431 -15.31083 -14.65639 -14.51537 -14.00768 -13.66936 -13.53141 -13.21868 -13.14450 -12.75299 -12.66982 -12.42854 -12.14178 -11.84382 -11.67629 -11.55727 -11.25141 -11.07224 -10.95883 -10.91363 -10.67571 -10.63437 -10.41021 -10.03815 -9.62896 -9.53633 -9.52391 -9.16200 -8.88678 -8.76499 -8.34837 -7.84227 -6.00299 -4.07146 2.09927 3.07410 3.30803 3.36038 3.38248 3.63263 4.24224 4.42281 4.58010 4.83122 4.91049 5.15713 5.25114 5.29294 5.34060 5.37724 5.56749 5.61402 5.74386 5.78032 5.79535 5.91746 6.01959 6.08967 6.12953 6.28306 6.34712 6.44969 6.45222 6.53041 6.55801 6.64007 6.70560 6.79663 6.85944 7.01078 7.19268 7.28018 7.53893 7.72988 7.95364 8.08400 8.38362 8.42070 8.95854 9.03523 9.57779 11.04977 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.028446 B = 0.003864 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.068878 B = 7244.329144 C = 7501.825206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.147 4.147 3 C -0.102 4.102 4 C 0.168 3.832 5 H 0.086 0.914 6 C -0.133 4.133 7 C -0.143 4.143 8 N -0.746 5.746 9 C 0.705 3.295 10 O -0.594 6.594 11 N -0.619 5.619 12 C 0.127 3.873 13 C -0.123 4.123 14 C 0.050 3.950 15 C -0.514 4.514 16 H 0.053 0.947 17 C 0.062 3.938 18 N -0.890 5.890 19 Si 0.891 3.109 20 H -0.278 1.278 21 H -0.287 1.287 22 H -0.278 1.278 23 C -0.123 4.123 24 C 0.114 3.886 25 H 0.095 0.905 26 H 0.095 0.905 27 H 0.109 0.891 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.038 0.962 34 H 0.057 0.943 35 H 0.392 0.608 36 H 0.076 0.924 37 H 0.054 0.946 38 H 0.103 0.897 39 H 0.037 0.963 40 H 0.026 0.974 41 H 0.261 0.739 42 H 0.059 0.941 43 H 0.052 0.948 44 H 0.061 0.939 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.063 8.320 -7.249 18.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.165 4.165 3 C -0.140 4.140 4 C 0.063 3.937 5 H 0.105 0.895 6 C -0.172 4.172 7 C -0.200 4.200 8 N -0.404 5.404 9 C 0.406 3.594 10 O -0.473 6.473 11 N -0.356 5.356 12 C 0.005 3.995 13 C -0.162 4.162 14 C 0.032 3.968 15 C -0.553 4.553 16 H 0.071 0.929 17 C -0.139 4.139 18 N -0.529 5.529 19 Si 0.719 3.281 20 H -0.204 1.204 21 H -0.213 1.213 22 H -0.204 1.204 23 C -0.162 4.162 24 C -0.009 4.009 25 H 0.113 0.887 26 H 0.114 0.886 27 H 0.127 0.873 28 H 0.095 0.905 29 H 0.099 0.901 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.057 0.943 34 H 0.076 0.924 35 H 0.229 0.771 36 H 0.094 0.906 37 H 0.072 0.928 38 H 0.121 0.879 39 H 0.056 0.944 40 H 0.045 0.955 41 H 0.071 0.929 42 H 0.077 0.923 43 H 0.070 0.930 44 H 0.079 0.921 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -15.180 8.511 -6.256 18.494 hybrid contribution 1.224 -0.242 -0.611 1.389 sum -13.957 8.269 -6.867 17.616 Atomic orbital electron populations 1.23821 0.95912 1.01720 1.02019 1.22933 0.95972 0.98569 0.99053 1.21097 0.98123 0.96097 0.98663 1.20786 0.87509 0.86878 0.98558 0.89544 1.21981 0.99477 0.96328 0.99420 1.21800 1.00437 1.00625 0.97143 1.45372 1.42961 1.43556 1.08546 1.15833 0.79323 0.79775 0.84421 1.90871 1.69042 1.63269 1.24111 1.47454 1.44641 1.35323 1.08169 1.21651 0.95456 0.95679 0.86684 1.21936 0.90615 1.00289 1.03351 1.18608 0.94845 0.93998 0.89357 1.21151 0.91376 1.32528 1.10202 0.92854 1.24958 0.98457 0.95230 0.95290 1.69840 1.35170 1.34072 1.13789 0.86682 0.85803 0.78052 0.77587 1.20358 1.21309 1.20357 1.22004 0.91925 1.01231 1.01008 1.21684 0.97947 0.98520 0.82794 0.88694 0.88620 0.87284 0.90487 0.90053 0.92173 0.91762 0.91527 0.94313 0.92366 0.77131 0.90558 0.92760 0.87922 0.94436 0.95541 0.92907 0.92271 0.92956 0.92101 0.92359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.66 14.32 29.01 0.42 -1.24 16 2 C -0.15 -1.35 9.25 -36.03 -0.33 -1.69 16 3 C -0.10 -0.86 5.20 -27.88 -0.15 -1.01 16 4 C 0.17 1.92 2.24 -67.93 -0.15 1.77 16 5 H 0.09 1.17 7.64 -51.93 -0.40 0.78 16 6 C -0.13 -1.49 5.61 -26.73 -0.15 -1.64 16 7 C -0.14 -2.04 8.47 37.16 0.31 -1.72 16 8 N -0.75 -9.78 4.63 -58.68 -0.27 -10.05 16 9 C 0.70 12.25 7.02 -86.92 -0.61 11.64 16 10 O -0.59 -12.05 12.57 5.29 0.07 -11.98 16 11 N -0.62 -11.12 2.98 -178.76 -0.53 -11.65 16 12 C 0.13 2.58 6.41 -3.93 -0.03 2.55 16 13 C -0.12 -2.87 5.14 -26.83 -0.14 -3.01 16 14 C 0.05 1.20 2.07 -91.73 -0.19 1.01 16 15 C -0.51 -13.72 8.56 -34.44 -0.29 -14.01 16 16 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 17 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 18 N -0.89 -24.83 11.31 55.43 0.63 -24.20 16 19 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 C -0.12 -2.37 5.30 -26.61 -0.14 -2.51 16 24 C 0.11 1.81 6.39 -3.71 -0.02 1.78 16 25 H 0.09 0.69 7.84 -52.49 -0.41 0.28 16 26 H 0.10 0.74 8.06 -52.48 -0.42 0.32 16 27 H 0.11 1.08 8.03 -52.49 -0.42 0.65 16 28 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.08 0.59 7.79 -51.93 -0.40 0.18 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.07 1.16 5.55 -51.93 -0.29 0.87 16 33 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.89 7.80 -51.93 -0.40 0.48 16 35 H 0.39 4.40 6.09 -40.82 -0.25 4.15 16 36 H 0.08 1.59 6.99 -51.93 -0.36 1.22 16 37 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 38 H 0.10 2.67 6.03 -51.93 -0.31 2.35 16 39 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 43 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.06 0.73 5.65 -51.93 -0.29 0.44 16 LS Contribution 348.57 15.07 5.25 5.25 Total: -1.00 -29.30 348.57 -9.18 -38.49 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -7.74 Total: 4.65 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: -1.57 Total: -6.50 kcal Atomic # 7 Polarization: -45.72 SS G_CDS: -0.18 Total: -45.90 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: 0.07 Total: -11.98 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.30 -9.18 -38.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000546667532.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.404 kcal (2) G-P(sol) polarization free energy of solvation -29.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds