Wall clock time and date at job start Tue Mar 31 2020 03:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50701 * 119.99880 * 2 1 4 4 C 1.53002 * 109.46957 * 124.99953 * 3 2 1 5 5 H 1.08999 * 109.47364 * 305.00368 * 4 3 2 6 6 C 1.52999 * 109.47105 * 184.99955 * 4 3 2 7 7 C 1.53001 * 109.47277 * 174.99951 * 6 4 3 8 8 N 1.46500 * 109.47205 * 65.00508 * 4 3 2 9 9 C 1.34777 * 120.00085 * 205.00384 * 8 4 3 10 10 O 1.21584 * 119.99927 * 355.69048 * 9 8 4 11 11 N 1.34779 * 119.99857 * 175.69657 * 9 8 4 12 12 C 1.46926 * 120.62532 * 184.95705 * 11 9 8 13 13 C 1.52762 * 109.00670 * 233.58097 * 12 11 9 14 14 C 1.53040 * 109.38287 * 305.59221 * 13 12 11 15 15 C 1.50705 * 109.44727 * 181.25517 * 14 13 12 16 16 H 1.07997 * 119.99717 * 239.93703 * 15 14 13 17 17 C 1.37871 * 120.00481 * 59.93652 * 15 14 13 18 18 N 1.31522 * 119.99541 * 0.02562 * 17 15 14 19 19 Si 1.86791 * 120.00443 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47308 * 60.00043 * 19 17 15 21 21 H 1.48501 * 109.47467 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47070 * 299.99943 * 19 17 15 23 23 C 1.53035 * 109.54209 * 61.24171 * 14 13 12 24 24 C 1.46925 * 120.63101 * 5.23730 * 11 9 8 25 25 H 1.07994 * 120.00237 * 359.97438 * 1 2 3 26 26 H 1.08005 * 119.99285 * 179.72581 * 1 2 3 27 27 H 1.07996 * 120.00260 * 179.97438 * 2 1 3 28 28 H 1.08998 * 109.47540 * 245.00248 * 3 2 1 29 29 H 1.08998 * 109.46848 * 5.00280 * 3 2 1 30 30 H 1.08994 * 109.47449 * 295.00505 * 6 4 3 31 31 H 1.09002 * 109.47059 * 55.00352 * 6 4 3 32 32 H 1.09002 * 109.46749 * 60.00211 * 7 6 4 33 33 H 1.09000 * 109.46984 * 180.02562 * 7 6 4 34 34 H 1.08994 * 109.47333 * 300.00624 * 7 6 4 35 35 H 0.97009 * 119.99994 * 24.99205 * 8 4 3 36 36 H 1.08991 * 109.59041 * 353.41583 * 12 11 9 37 37 H 1.09006 * 109.58483 * 113.84424 * 12 11 9 38 38 H 1.09000 * 109.56217 * 185.56009 * 13 12 11 39 39 H 1.09001 * 109.38387 * 65.51970 * 13 12 11 40 40 H 1.09001 * 109.46442 * 301.21422 * 14 13 12 41 41 H 0.97005 * 120.00154 * 180.02562 * 18 17 15 42 42 H 1.08992 * 109.50232 * 178.68070 * 23 14 13 43 43 H 1.09006 * 109.52521 * 58.59765 * 23 14 13 44 44 H 1.09005 * 109.58606 * 246.15636 * 24 11 9 45 45 H 1.08993 * 109.58847 * 6.44176 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1817 5 1 2.4883 1.1468 2.1060 6 6 3.7091 2.7046 1.2553 7 6 4.5856 2.7755 2.5074 8 7 4.0547 0.2970 1.0001 9 6 4.6912 -0.2171 2.0712 10 8 4.4764 0.2332 3.1799 11 7 5.5660 -1.2302 1.9130 12 6 6.1857 -1.8729 3.0798 13 6 7.7038 -1.8545 2.9102 14 6 8.0728 -2.4942 1.5697 15 6 9.5718 -2.5047 1.4146 16 1 10.0324 -1.9885 0.5854 17 6 10.3551 -3.1734 2.3312 18 7 9.7941 -3.8025 3.3408 19 14 12.2131 -3.1858 2.1393 20 1 12.7243 -1.7921 2.1796 21 1 12.8200 -3.9683 3.2459 22 1 12.5723 -3.8074 0.8393 23 6 7.4478 -1.6884 0.4287 24 6 5.9225 -1.7086 0.5704 25 1 -0.5400 0.9352 0.0004 26 1 -0.5399 -0.9354 -0.0045 27 1 1.8500 -0.9353 0.0004 28 1 2.6212 1.4027 -0.9314 29 1 1.3585 2.1316 0.0896 30 1 4.3273 2.8536 0.3701 31 1 2.9467 3.4822 1.3011 32 1 5.3481 1.9979 2.4616 33 1 5.0655 3.7528 2.5600 34 1 3.9674 2.6265 3.3926 35 1 4.2716 -0.0192 0.1091 36 1 5.9139 -1.3287 3.9842 37 1 5.8416 -2.9046 3.1544 38 1 8.1684 -2.4154 3.7211 39 1 8.0576 -0.8238 2.9311 40 1 7.6976 -3.5172 1.5399 41 1 10.3452 -4.2726 3.9859 42 1 7.7303 -2.1309 -0.5265 43 1 7.8036 -0.6590 0.4722 44 1 5.5565 -2.7266 0.4361 45 1 5.4751 -1.0574 -0.1804 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000546667532.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:02:59 Heat of formation + Delta-G solvation = -39.326757 kcal Electronic energy + Delta-G solvation = -22965.495550 eV Core-core repulsion = 19789.267577 eV Total energy + Delta-G solvation = -3176.227973 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.49331 -38.98893 -37.51377 -35.38947 -34.68086 -33.54297 -32.50992 -31.52600 -29.51561 -27.88206 -24.96126 -24.63493 -23.87316 -22.22178 -21.44256 -20.53375 -20.39954 -18.99570 -18.30420 -17.47895 -16.68402 -16.54385 -16.09100 -15.89588 -15.21734 -14.92830 -14.85503 -14.57422 -14.47752 -14.19079 -14.17933 -13.69437 -13.35405 -13.32919 -12.99934 -12.79804 -12.58019 -12.49724 -12.38021 -12.22140 -12.14463 -11.90947 -11.77068 -11.63867 -11.40998 -11.15888 -10.88979 -10.76539 -10.39695 -10.22351 -9.92116 -9.32211 -8.06688 -6.20855 1.42236 1.43228 1.45019 1.50412 1.79496 2.26603 2.44332 3.02659 3.19700 3.79803 4.04014 4.08981 4.18793 4.27307 4.33412 4.35350 4.41162 4.52146 4.57544 4.61362 4.69942 4.75507 4.88806 4.92110 4.98486 4.99880 5.08005 5.09059 5.16003 5.21178 5.23967 5.29317 5.47867 5.52802 5.56387 5.67591 5.71478 5.81487 5.93352 5.99431 6.13342 6.15990 6.39318 6.90609 7.10938 7.47196 7.69626 8.96410 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.028446 B = 0.003864 C = 0.003732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.068878 B = 7244.329144 C = 7501.825206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.164 4.164 3 C -0.090 4.090 4 C 0.167 3.833 5 H 0.062 0.938 6 C -0.128 4.128 7 C -0.139 4.139 8 N -0.728 5.728 9 C 0.702 3.298 10 O -0.627 6.627 11 N -0.625 5.625 12 C 0.141 3.859 13 C -0.110 4.110 14 C 0.047 3.953 15 C -0.534 4.534 16 H 0.052 0.948 17 C 0.013 3.987 18 N -0.915 5.915 19 Si 0.950 3.050 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.269 1.269 23 C -0.115 4.115 24 C 0.119 3.881 25 H 0.109 0.891 26 H 0.097 0.903 27 H 0.099 0.901 28 H 0.094 0.906 29 H 0.101 0.899 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.031 0.969 33 H 0.048 0.952 34 H 0.039 0.961 35 H 0.405 0.595 36 H 0.065 0.935 37 H 0.057 0.943 38 H 0.071 0.929 39 H 0.017 0.983 40 H 0.003 0.997 41 H 0.260 0.740 42 H 0.073 0.927 43 H 0.043 0.957 44 H 0.072 0.928 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.321 9.514 -9.660 21.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.182 4.182 3 C -0.128 4.128 4 C 0.062 3.938 5 H 0.080 0.920 6 C -0.166 4.166 7 C -0.197 4.197 8 N -0.387 5.387 9 C 0.403 3.597 10 O -0.508 6.508 11 N -0.361 5.361 12 C 0.017 3.983 13 C -0.149 4.149 14 C 0.028 3.972 15 C -0.572 4.572 16 H 0.070 0.930 17 C -0.186 4.186 18 N -0.555 5.555 19 Si 0.776 3.224 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.194 1.194 23 C -0.154 4.154 24 C -0.003 4.003 25 H 0.127 0.873 26 H 0.116 0.884 27 H 0.117 0.883 28 H 0.113 0.887 29 H 0.119 0.881 30 H 0.091 0.909 31 H 0.110 0.890 32 H 0.050 0.950 33 H 0.068 0.932 34 H 0.058 0.942 35 H 0.243 0.757 36 H 0.084 0.916 37 H 0.075 0.925 38 H 0.089 0.911 39 H 0.036 0.964 40 H 0.022 0.978 41 H 0.069 0.931 42 H 0.091 0.909 43 H 0.062 0.938 44 H 0.091 0.909 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -16.459 9.718 -8.723 21.011 hybrid contribution 1.585 -0.595 0.166 1.701 sum -14.875 9.123 -8.557 19.435 Atomic orbital electron populations 1.24003 0.95819 1.02566 1.00698 1.22971 0.96372 0.98600 1.00278 1.21039 0.97638 0.96389 0.97695 1.20919 0.87338 0.86342 0.99161 0.91959 1.21966 0.99757 0.96884 0.98010 1.21723 0.99825 0.99857 0.98277 1.45271 1.42297 1.43212 1.07875 1.15985 0.79298 0.79444 0.84932 1.90853 1.70001 1.64140 1.25853 1.47390 1.44904 1.35651 1.08161 1.21268 0.93381 0.95986 0.87632 1.21686 0.92661 0.98237 1.02340 1.18585 0.93842 0.93536 0.91233 1.21572 0.93217 1.32302 1.10107 0.92957 1.25712 1.02636 0.95109 0.95126 1.69980 1.36462 1.34688 1.14363 0.85734 0.80886 0.78002 0.77754 1.20123 1.21184 1.19427 1.21857 0.94150 0.99736 0.99614 1.21765 0.95650 1.00341 0.82585 0.87320 0.88435 0.88288 0.88746 0.88103 0.90889 0.89045 0.95028 0.93250 0.94205 0.75686 0.91613 0.92452 0.91085 0.96372 0.97838 0.93085 0.90890 0.93810 0.90929 0.88153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.73 14.32 67.78 0.97 -1.76 16 2 C -0.16 -2.57 9.25 25.65 0.24 -2.33 16 3 C -0.09 -1.20 5.20 29.85 0.16 -1.04 16 4 C 0.17 3.43 2.24 44.99 0.10 3.53 16 5 H 0.06 1.62 7.64 -2.39 -0.02 1.60 16 6 C -0.13 -2.51 5.61 30.59 0.17 -2.34 16 7 C -0.14 -3.90 8.47 71.98 0.61 -3.30 16 8 N -0.73 -17.60 4.63 -457.81 -2.12 -19.72 16 9 C 0.70 24.01 7.02 179.05 1.26 25.27 16 10 O -0.63 -25.90 12.57 -3.98 -0.05 -25.95 16 11 N -0.62 -22.11 2.98 -837.74 -2.50 -24.60 16 12 C 0.14 5.86 6.41 86.22 0.55 6.41 16 13 C -0.11 -5.34 5.14 30.53 0.16 -5.19 16 14 C 0.05 2.25 2.07 -11.51 -0.02 2.23 16 15 C -0.53 -28.88 8.56 25.60 0.22 -28.66 16 16 H 0.05 2.77 7.74 -2.91 -0.02 2.74 16 17 C 0.01 0.70 5.30 84.65 0.45 1.15 16 18 N -0.92 -52.50 11.31 21.45 0.24 -52.26 16 19 Si 0.95 43.46 29.54 68.60 2.03 45.49 16 20 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 21 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 22 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 23 C -0.12 -4.32 5.30 30.67 0.16 -4.15 16 24 C 0.12 3.53 6.39 86.36 0.55 4.08 16 25 H 0.11 1.21 7.84 -2.91 -0.02 1.19 16 26 H 0.10 1.31 8.06 -2.91 -0.02 1.29 16 27 H 0.10 1.74 8.03 -2.91 -0.02 1.71 16 28 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.10 1.01 7.79 -2.39 -0.02 0.99 16 30 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.03 1.09 5.55 -2.39 -0.01 1.08 16 33 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.04 1.23 7.80 -2.39 -0.02 1.21 16 35 H 0.40 7.70 6.09 -92.70 -0.56 7.14 16 36 H 0.07 2.86 6.99 -2.39 -0.02 2.84 16 37 H 0.06 2.33 8.14 -2.38 -0.02 2.31 16 38 H 0.07 3.89 6.03 -2.39 -0.01 3.87 16 39 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 41 H 0.26 14.32 8.31 -92.70 -0.77 13.55 16 42 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 43 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 44 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 45 H 0.10 2.14 5.65 -2.39 -0.01 2.13 16 Total: -1.00 -66.14 348.57 3.56 -62.58 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: 0.39 Total: 20.57 kcal Atomic # 6 Polarization: -11.67 SS G_CDS: 5.57 Total: -6.10 kcal Atomic # 7 Polarization: -92.21 SS G_CDS: -4.37 Total: -96.58 kcal Atomic # 8 Polarization: -25.90 SS G_CDS: -0.05 Total: -25.95 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.49 kcal Total: -66.14 3.56 -62.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000546667532.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.251 kcal (2) G-P(sol) polarization free energy of solvation -66.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds