Wall clock time and date at job start Tue Mar 31 2020 02:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47197 * 2 1 4 4 C 1.53004 * 109.47502 * 119.99715 * 2 1 3 5 5 O 1.42901 * 109.47341 * 300.00357 * 4 2 1 6 6 C 1.52999 * 109.47299 * 239.99746 * 2 1 3 7 7 H 1.09005 * 109.47112 * 179.97438 * 6 2 1 8 8 N 1.46907 * 109.46654 * 60.00105 * 6 2 1 9 9 C 1.46907 * 111.00005 * 123.13155 * 8 6 2 10 10 C 1.52994 * 109.47163 * 174.57563 * 9 8 6 11 11 H 1.09009 * 109.47110 * 305.00200 * 10 9 8 12 12 C 1.47199 * 109.47133 * 64.99524 * 10 9 8 13 13 N 5.21329 * 82.06133 * 307.89306 * 2 1 3 14 14 C 1.53001 * 109.47310 * 184.99942 * 10 9 8 15 15 C 1.50701 * 109.47207 * 174.99910 * 14 10 9 16 16 H 1.08003 * 119.99888 * 0.02562 * 15 14 10 17 17 C 1.37870 * 120.00035 * 179.97438 * 15 14 10 18 18 N 1.31521 * 119.99889 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00329 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46552 * 60.00169 * 19 17 15 21 21 H 1.48495 * 109.47295 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47038 * 300.00533 * 19 17 15 23 23 C 1.52999 * 109.47368 * 299.99992 * 6 2 1 24 24 C 1.52997 * 117.49803 * 253.95620 * 23 6 2 25 25 C 1.52999 * 117.49694 * 185.29362 * 23 6 2 26 26 H 1.08996 * 109.46656 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.47000 * 60.00135 * 1 2 3 28 28 H 1.09004 * 109.47017 * 299.99729 * 1 2 3 29 29 H 1.08996 * 109.47077 * 59.99883 * 3 2 1 30 30 H 1.08998 * 109.47206 * 180.02562 * 3 2 1 31 31 H 1.08993 * 109.46666 * 300.00236 * 3 2 1 32 32 H 1.09003 * 109.46831 * 60.00013 * 4 2 1 33 33 H 1.08998 * 109.47330 * 179.97438 * 4 2 1 34 34 H 0.96691 * 114.00381 * 179.97438 * 5 4 2 35 35 H 1.00898 * 110.99472 * 247.08335 * 8 6 2 36 36 H 1.09002 * 109.46699 * 294.57585 * 9 8 6 37 37 H 1.08999 * 109.46657 * 54.57251 * 9 8 6 38 38 H 1.08994 * 109.46560 * 295.00368 * 14 10 9 39 39 H 1.08995 * 109.46576 * 55.00008 * 14 10 9 40 40 H 0.97003 * 119.99872 * 179.97438 * 18 17 15 41 41 H 1.08996 * 115.54639 * 39.62419 * 23 6 2 42 42 H 1.08997 * 117.49745 * 359.97438 * 24 23 6 43 43 H 1.08994 * 117.49829 * 145.01980 * 24 23 6 44 44 H 1.08997 * 117.49629 * 214.97435 * 25 23 6 45 45 H 1.08995 * 117.50136 * 359.97438 * 25 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 8 1.5638 -0.0476 2.4161 6 6 2.0400 -0.7213 -1.2492 7 1 3.1301 -0.7209 -1.2494 8 7 1.5503 -0.0287 -2.4486 9 6 2.6660 0.3828 -3.3113 10 6 2.1149 0.9772 -4.6089 11 1 1.4425 0.2603 -5.0802 12 6 1.3783 2.2155 -4.3073 13 7 0.8100 3.1713 -4.0747 14 6 3.2729 1.2909 -5.5584 15 6 2.7248 1.7609 -6.8811 16 1 1.6572 1.8294 -7.0296 17 6 3.5861 2.1044 -7.9014 18 7 4.8861 2.0214 -7.7204 19 14 2.9067 2.6863 -9.5413 20 1 2.0912 3.9098 -9.3330 21 1 4.0307 2.9908 -10.4627 22 1 2.0580 1.6203 -10.1318 23 6 1.5301 -2.1638 -1.2492 24 6 2.5364 -3.2688 -0.9218 25 6 2.0340 -3.0912 -2.3569 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 0.5138 0.8900 29 1 1.6767 1.9564 0.8899 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6768 -1.7489 1.2493 33 1 3.1301 -0.7216 1.2490 34 1 1.8488 -0.4512 3.2472 35 1 0.8943 -0.6038 -2.9556 36 1 3.2672 1.1314 -2.7953 37 1 3.2850 -0.4839 -3.5428 38 1 3.8964 2.0728 -5.1249 39 1 3.8707 0.3925 -5.7113 40 1 5.4922 2.2627 -8.4383 41 1 0.5043 -2.2997 -0.9068 42 1 3.5618 -2.9681 -0.7069 43 1 2.1725 -4.1319 -0.3645 44 1 1.3398 -3.8375 -2.7429 45 1 2.7284 -2.6735 -3.0858 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566230813.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:30:38 Heat of formation + Delta-G solvation = -21.115541 kcal Electronic energy + Delta-G solvation = -22596.006384 eV Core-core repulsion = 19420.568108 eV Total energy + Delta-G solvation = -3175.438275 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.73508 -37.16292 -36.65441 -35.00210 -34.05511 -33.04074 -31.04649 -27.44055 -26.99692 -26.38827 -24.78156 -22.66824 -22.31866 -21.80447 -21.00962 -18.63258 -17.53807 -17.05900 -16.46840 -15.98318 -15.30159 -14.90649 -14.74402 -14.58372 -14.17884 -13.65500 -13.46374 -13.28562 -12.78954 -12.63448 -12.44332 -12.31104 -11.99696 -11.83425 -11.67193 -11.63736 -11.41857 -11.31848 -11.09726 -10.97838 -10.76764 -10.66638 -10.56150 -10.41822 -10.38178 -10.22590 -10.13495 -9.97542 -9.51453 -9.22757 -8.45757 -8.20122 -6.09837 -4.13078 3.30944 3.35296 3.39071 3.54562 3.76600 3.85312 3.94596 4.38426 4.40816 4.59785 4.72334 4.88521 4.93075 4.94924 5.03993 5.09757 5.24049 5.28318 5.36893 5.44425 5.46912 5.55323 5.63481 5.68923 5.75834 5.81511 5.93693 6.04072 6.05536 6.08128 6.13545 6.18311 6.35668 6.40210 6.49090 6.54756 6.66377 7.14802 7.41367 7.50843 7.52349 7.57153 7.85210 8.22808 8.60643 8.91494 9.52468 11.00989 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.023503 B = 0.003885 C = 0.003593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.045467 B = 7204.585503 C = 7790.902328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.043 4.043 3 C -0.131 4.131 4 C 0.085 3.915 5 O -0.569 6.569 6 C 0.129 3.871 7 H 0.066 0.934 8 N -0.680 5.680 9 C 0.067 3.933 10 C 0.009 3.991 11 H 0.098 0.902 12 C 0.254 3.746 13 N -0.477 5.477 14 C 0.033 3.967 15 C -0.527 4.527 16 H 0.056 0.944 17 C 0.063 3.937 18 N -0.892 5.892 19 Si 0.891 3.109 20 H -0.276 1.276 21 H -0.286 1.286 22 H -0.275 1.275 23 C -0.175 4.175 24 C -0.177 4.177 25 C -0.178 4.178 26 H 0.045 0.955 27 H 0.066 0.934 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.042 0.958 31 H 0.069 0.931 32 H 0.046 0.954 33 H 0.039 0.961 34 H 0.373 0.627 35 H 0.345 0.655 36 H 0.076 0.924 37 H 0.047 0.953 38 H 0.026 0.974 39 H 0.036 0.964 40 H 0.263 0.737 41 H 0.111 0.889 42 H 0.093 0.907 43 H 0.091 0.909 44 H 0.094 0.906 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.524 -12.523 16.987 21.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.044 4.044 3 C -0.188 4.188 4 C 0.007 3.993 5 O -0.373 6.373 6 C 0.019 3.981 7 H 0.085 0.915 8 N -0.310 5.310 9 C -0.062 4.062 10 C -0.013 4.013 11 H 0.116 0.884 12 C -0.063 4.063 13 N -0.154 5.154 14 C -0.006 4.006 15 C -0.565 4.565 16 H 0.074 0.926 17 C -0.139 4.139 18 N -0.531 5.531 19 Si 0.719 3.281 20 H -0.202 1.202 21 H -0.212 1.212 22 H -0.201 1.201 23 C -0.194 4.194 24 C -0.215 4.215 25 C -0.215 4.215 26 H 0.064 0.936 27 H 0.086 0.914 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.088 0.912 32 H 0.064 0.936 33 H 0.057 0.943 34 H 0.219 0.781 35 H 0.164 0.836 36 H 0.094 0.906 37 H 0.065 0.935 38 H 0.044 0.956 39 H 0.054 0.946 40 H 0.072 0.928 41 H 0.129 0.871 42 H 0.111 0.889 43 H 0.110 0.890 44 H 0.113 0.887 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -4.532 -10.032 17.082 20.322 hybrid contribution 0.561 -1.352 -1.082 1.820 sum -3.971 -11.385 16.000 20.035 Atomic orbital electron populations 1.21724 0.93993 1.00828 1.02271 1.20435 0.96787 0.95936 0.91226 1.21684 0.99656 0.95092 1.02397 1.22252 0.96754 0.94730 0.85569 1.86494 1.77494 1.57450 1.15889 1.21056 0.97830 0.88266 0.90932 0.91545 1.60484 1.16576 1.45799 1.08154 1.22192 0.92454 0.99373 0.92224 1.19224 0.98226 0.88109 0.95780 0.88399 1.28841 0.92282 0.94207 0.90983 1.80994 1.11246 1.12099 1.11044 1.19149 0.90914 0.98201 0.92340 1.21106 0.93010 1.45114 0.97256 0.92564 1.24945 0.94793 0.95312 0.98855 1.69931 1.01700 1.48185 1.33247 0.86659 0.78540 0.79462 0.83456 1.20199 1.21199 1.20071 1.23017 0.99727 0.92130 1.04519 1.22972 0.99126 1.00352 0.99044 1.22991 1.03977 1.02625 0.91911 0.93642 0.91450 0.92821 0.92767 0.93882 0.91190 0.93606 0.94260 0.78113 0.83601 0.90558 0.93464 0.95596 0.94551 0.92754 0.87120 0.88881 0.89046 0.88710 0.88409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.52 7.92 37.16 0.29 -1.22 16 2 C -0.04 -0.47 0.45 -154.51 -0.07 -0.54 16 3 C -0.13 -1.72 8.17 37.16 0.30 -1.42 16 4 C 0.09 0.80 5.66 37.16 0.21 1.02 16 5 O -0.57 -5.59 12.31 -35.23 -0.43 -6.03 16 6 C 0.13 1.36 1.63 -67.71 -0.11 1.25 16 7 H 0.07 0.73 7.35 -51.93 -0.38 0.35 16 8 N -0.68 -8.33 4.60 -106.72 -0.49 -8.82 16 9 C 0.07 0.96 4.74 -3.82 -0.02 0.94 16 10 C 0.01 0.15 2.31 -93.41 -0.22 -0.06 16 11 H 0.10 1.62 8.12 -51.92 -0.42 1.19 16 12 C 0.25 5.24 13.67 -20.76 -0.28 4.95 16 13 N -0.48 -10.79 18.54 42.16 0.78 -10.01 16 14 C 0.03 0.75 4.42 -27.88 -0.12 0.62 16 15 C -0.53 -13.95 8.60 -34.44 -0.30 -14.24 16 16 H 0.06 1.48 7.59 -52.48 -0.40 1.08 16 17 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 18 N -0.89 -25.47 13.29 55.43 0.74 -24.73 16 19 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 21 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 C -0.17 -1.54 3.44 -90.62 -0.31 -1.86 16 24 C -0.18 -1.40 9.88 -26.69 -0.26 -1.66 16 25 C -0.18 -1.55 10.09 -26.69 -0.27 -1.82 16 26 H 0.04 0.46 6.19 -51.93 -0.32 0.14 16 27 H 0.07 0.87 7.60 -51.93 -0.39 0.48 16 28 H 0.05 0.66 7.68 -51.93 -0.40 0.27 16 29 H 0.05 0.74 7.68 -51.93 -0.40 0.34 16 30 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 1.07 7.60 -51.93 -0.39 0.68 16 32 H 0.05 0.39 6.97 -51.93 -0.36 0.03 16 33 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.37 1.98 9.12 45.56 0.42 2.39 16 35 H 0.34 3.99 7.91 -39.29 -0.31 3.68 16 36 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.05 0.62 7.77 -51.93 -0.40 0.21 16 38 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 41 H 0.11 0.98 6.15 -51.93 -0.32 0.67 16 42 H 0.09 0.73 8.08 -51.93 -0.42 0.31 16 43 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.10 0.94 7.78 -51.93 -0.40 0.54 16 LS Contribution 364.93 15.07 5.50 5.50 Total: -1.00 -30.54 364.93 -7.19 -37.73 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -7.01 Total: 2.51 kcal Atomic # 6 Polarization: -11.17 SS G_CDS: -1.25 Total: -12.42 kcal Atomic # 7 Polarization: -44.59 SS G_CDS: 1.03 Total: -43.56 kcal Atomic # 8 Polarization: -5.59 SS G_CDS: -0.43 Total: -6.03 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.54 -7.19 -37.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566230813.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.614 kcal (2) G-P(sol) polarization free energy of solvation -30.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds