Wall clock time and date at job start Tue Mar 31 2020 02:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47197 * 2 1 4 4 C 1.53004 * 109.47502 * 119.99715 * 2 1 3 5 5 O 1.42901 * 109.47341 * 300.00357 * 4 2 1 6 6 C 1.52999 * 109.47299 * 239.99746 * 2 1 3 7 7 H 1.09005 * 109.47112 * 179.97438 * 6 2 1 8 8 N 1.46907 * 109.46654 * 60.00105 * 6 2 1 9 9 C 1.46907 * 111.00005 * 123.13155 * 8 6 2 10 10 C 1.52994 * 109.47163 * 174.57563 * 9 8 6 11 11 H 1.09009 * 109.47110 * 305.00200 * 10 9 8 12 12 C 1.47199 * 109.47133 * 64.99524 * 10 9 8 13 13 N 5.21329 * 82.06133 * 307.89306 * 2 1 3 14 14 C 1.53001 * 109.47310 * 184.99942 * 10 9 8 15 15 C 1.50701 * 109.47207 * 174.99910 * 14 10 9 16 16 H 1.08003 * 119.99888 * 0.02562 * 15 14 10 17 17 C 1.37870 * 120.00035 * 179.97438 * 15 14 10 18 18 N 1.31521 * 119.99889 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00329 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46552 * 60.00169 * 19 17 15 21 21 H 1.48495 * 109.47295 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47038 * 300.00533 * 19 17 15 23 23 C 1.52999 * 109.47368 * 299.99992 * 6 2 1 24 24 C 1.52997 * 117.49803 * 253.95620 * 23 6 2 25 25 C 1.52999 * 117.49694 * 185.29362 * 23 6 2 26 26 H 1.08996 * 109.46656 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.47000 * 60.00135 * 1 2 3 28 28 H 1.09004 * 109.47017 * 299.99729 * 1 2 3 29 29 H 1.08996 * 109.47077 * 59.99883 * 3 2 1 30 30 H 1.08998 * 109.47206 * 180.02562 * 3 2 1 31 31 H 1.08993 * 109.46666 * 300.00236 * 3 2 1 32 32 H 1.09003 * 109.46831 * 60.00013 * 4 2 1 33 33 H 1.08998 * 109.47330 * 179.97438 * 4 2 1 34 34 H 0.96691 * 114.00381 * 179.97438 * 5 4 2 35 35 H 1.00898 * 110.99472 * 247.08335 * 8 6 2 36 36 H 1.09002 * 109.46699 * 294.57585 * 9 8 6 37 37 H 1.08999 * 109.46657 * 54.57251 * 9 8 6 38 38 H 1.08994 * 109.46560 * 295.00368 * 14 10 9 39 39 H 1.08995 * 109.46576 * 55.00008 * 14 10 9 40 40 H 0.97003 * 119.99872 * 179.97438 * 18 17 15 41 41 H 1.08996 * 115.54639 * 39.62419 * 23 6 2 42 42 H 1.08997 * 117.49745 * 359.97438 * 24 23 6 43 43 H 1.08994 * 117.49829 * 145.01980 * 24 23 6 44 44 H 1.08997 * 117.49629 * 214.97435 * 25 23 6 45 45 H 1.08995 * 117.50136 * 359.97438 * 25 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 8 1.5638 -0.0476 2.4161 6 6 2.0400 -0.7213 -1.2492 7 1 3.1301 -0.7209 -1.2494 8 7 1.5503 -0.0287 -2.4486 9 6 2.6660 0.3828 -3.3113 10 6 2.1149 0.9772 -4.6089 11 1 1.4425 0.2603 -5.0802 12 6 1.3783 2.2155 -4.3073 13 7 0.8100 3.1713 -4.0747 14 6 3.2729 1.2909 -5.5584 15 6 2.7248 1.7609 -6.8811 16 1 1.6572 1.8294 -7.0296 17 6 3.5861 2.1044 -7.9014 18 7 4.8861 2.0214 -7.7204 19 14 2.9067 2.6863 -9.5413 20 1 2.0912 3.9098 -9.3330 21 1 4.0307 2.9908 -10.4627 22 1 2.0580 1.6203 -10.1318 23 6 1.5301 -2.1638 -1.2492 24 6 2.5364 -3.2688 -0.9218 25 6 2.0340 -3.0912 -2.3569 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 0.5138 0.8900 29 1 1.6767 1.9564 0.8899 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6768 -1.7489 1.2493 33 1 3.1301 -0.7216 1.2490 34 1 1.8488 -0.4512 3.2472 35 1 0.8943 -0.6038 -2.9556 36 1 3.2672 1.1314 -2.7953 37 1 3.2850 -0.4839 -3.5428 38 1 3.8964 2.0728 -5.1249 39 1 3.8707 0.3925 -5.7113 40 1 5.4922 2.2627 -8.4383 41 1 0.5043 -2.2997 -0.9068 42 1 3.5618 -2.9681 -0.7069 43 1 2.1725 -4.1319 -0.3645 44 1 1.3398 -3.8375 -2.7429 45 1 2.7284 -2.6735 -3.0858 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566230813.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:30:37 Heat of formation + Delta-G solvation = -40.688986 kcal Electronic energy + Delta-G solvation = -22596.855152 eV Core-core repulsion = 19420.568108 eV Total energy + Delta-G solvation = -3176.287043 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.59289 -38.41558 -37.63785 -36.07026 -35.51536 -34.65946 -32.59436 -28.78765 -28.12345 -27.39052 -25.98590 -23.89602 -23.49302 -23.05233 -21.80039 -19.53751 -18.56610 -18.32615 -18.26014 -16.97586 -16.50835 -16.23161 -15.71373 -15.64070 -15.34856 -15.02087 -14.52866 -14.34493 -14.16887 -14.04921 -13.69981 -13.56430 -13.35588 -13.23100 -13.07454 -12.89662 -12.70443 -12.48078 -12.45292 -12.33900 -12.25494 -11.94042 -11.91082 -11.58730 -11.40919 -11.30542 -11.15473 -11.04939 -10.83690 -10.65936 -10.54588 -9.17569 -8.19062 -6.27266 1.40984 1.42938 1.49760 2.09748 2.16420 2.41747 2.82996 3.15676 3.17093 3.35868 3.63852 3.81415 3.97998 4.11649 4.18748 4.22916 4.26889 4.32514 4.37549 4.45450 4.62663 4.67753 4.71429 4.81653 4.84703 4.89790 4.91882 5.01955 5.04633 5.13777 5.17816 5.20681 5.34411 5.36280 5.38564 5.47018 5.54860 5.62416 5.65286 5.79633 6.11368 6.23835 6.61651 6.84058 6.95811 7.02640 7.41368 8.91616 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.023503 B = 0.003885 C = 0.003593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.045467 B = 7204.585503 C = 7790.902328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.043 4.043 3 C -0.125 4.125 4 C 0.090 3.910 5 O -0.589 6.589 6 C 0.135 3.865 7 H 0.065 0.935 8 N -0.686 5.686 9 C 0.082 3.918 10 C 0.020 3.980 11 H 0.120 0.880 12 C 0.265 3.735 13 N -0.514 5.514 14 C 0.039 3.961 15 C -0.539 4.539 16 H 0.054 0.946 17 C 0.012 3.988 18 N -0.923 5.923 19 Si 0.947 3.053 20 H -0.282 1.282 21 H -0.282 1.282 22 H -0.262 1.262 23 C -0.175 4.175 24 C -0.166 4.166 25 C -0.182 4.182 26 H 0.062 0.938 27 H 0.048 0.952 28 H 0.041 0.959 29 H 0.044 0.956 30 H 0.043 0.957 31 H 0.042 0.958 32 H 0.062 0.938 33 H 0.045 0.955 34 H 0.393 0.607 35 H 0.351 0.649 36 H 0.064 0.936 37 H 0.065 0.935 38 H -0.002 1.002 39 H 0.035 0.965 40 H 0.264 0.736 41 H 0.115 0.885 42 H 0.094 0.906 43 H 0.106 0.894 44 H 0.102 0.898 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.975 -14.569 17.530 23.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.044 4.044 3 C -0.183 4.183 4 C 0.012 3.988 5 O -0.396 6.396 6 C 0.025 3.975 7 H 0.083 0.917 8 N -0.317 5.317 9 C -0.048 4.048 10 C -0.002 4.002 11 H 0.138 0.862 12 C -0.051 4.051 13 N -0.192 5.192 14 C 0.000 4.000 15 C -0.577 4.577 16 H 0.072 0.928 17 C -0.187 4.187 18 N -0.563 5.563 19 Si 0.773 3.227 20 H -0.208 1.208 21 H -0.208 1.208 22 H -0.187 1.187 23 C -0.193 4.193 24 C -0.203 4.203 25 C -0.219 4.219 26 H 0.081 0.919 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.242 0.758 35 H 0.171 0.829 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.016 0.984 39 H 0.054 0.946 40 H 0.073 0.927 41 H 0.133 0.867 42 H 0.113 0.887 43 H 0.124 0.876 44 H 0.121 0.879 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.991 -12.098 17.644 21.967 hybrid contribution 0.704 -0.694 -1.200 1.555 sum -4.287 -12.792 16.444 21.270 Atomic orbital electron populations 1.21642 0.94331 1.01434 1.00736 1.20440 0.96442 0.94782 0.92734 1.21606 0.99627 0.96498 1.00548 1.22175 0.97040 0.94983 0.84620 1.86448 1.77864 1.58293 1.17032 1.20989 0.97698 0.89232 0.89599 0.91687 1.60394 1.16035 1.46857 1.08414 1.21952 0.92848 0.99451 0.90525 1.19195 0.96600 0.87490 0.96895 0.86215 1.29367 0.91591 0.94271 0.89900 1.80991 1.12606 1.13162 1.12441 1.18968 0.92054 0.97003 0.91939 1.21531 0.92986 1.44500 0.98729 0.92775 1.25696 0.95112 0.95724 1.02126 1.70028 1.02690 1.49403 1.34216 0.85773 0.78041 0.78934 0.79984 1.20797 1.20757 1.18654 1.22854 1.00156 0.90988 1.05352 1.23047 0.98897 1.00030 0.98352 1.23009 1.04076 1.02684 0.92151 0.91922 0.93293 0.93981 0.93673 0.93747 0.93853 0.91954 0.93628 0.75833 0.82890 0.91774 0.91706 0.98372 0.94627 0.92737 0.86728 0.88705 0.87577 0.87924 0.89385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.75 7.92 71.98 0.57 -2.18 16 2 C -0.04 -0.90 0.45 -52.18 -0.02 -0.92 16 3 C -0.13 -3.31 8.17 71.98 0.59 -2.72 16 4 C 0.09 1.49 5.66 71.98 0.41 1.90 16 5 O -0.59 -10.50 12.31 -148.98 -1.83 -12.33 16 6 C 0.13 2.59 1.63 44.91 0.07 2.67 16 7 H 0.06 1.30 7.35 -2.38 -0.02 1.28 16 8 N -0.69 -16.00 4.60 -491.55 -2.26 -18.26 16 9 C 0.08 2.26 4.74 86.30 0.41 2.67 16 10 C 0.02 0.70 2.31 -12.60 -0.03 0.67 16 11 H 0.12 3.73 8.12 -2.38 -0.02 3.71 16 12 C 0.26 10.94 13.67 89.44 1.22 12.17 16 13 N -0.51 -23.53 18.54 20.01 0.37 -23.16 16 14 C 0.04 1.79 4.42 29.85 0.13 1.93 16 15 C -0.54 -28.49 8.60 25.60 0.22 -28.27 16 16 H 0.05 2.82 7.59 -2.91 -0.02 2.80 16 17 C 0.01 0.68 5.46 84.65 0.46 1.14 16 18 N -0.92 -53.01 13.29 21.45 0.28 -52.73 16 19 Si 0.95 43.42 29.54 68.60 2.03 45.45 16 20 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 21 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 22 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 23 C -0.17 -2.60 3.44 -10.80 -0.04 -2.64 16 24 C -0.17 -2.08 9.88 30.62 0.30 -1.78 16 25 C -0.18 -2.68 10.09 30.62 0.31 -2.37 16 26 H 0.06 1.15 6.19 -2.39 -0.01 1.13 16 27 H 0.05 1.25 7.60 -2.39 -0.02 1.23 16 28 H 0.04 1.01 7.68 -2.39 -0.02 1.00 16 29 H 0.04 1.24 7.68 -2.39 -0.02 1.22 16 30 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.04 1.36 7.60 -2.39 -0.02 1.34 16 32 H 0.06 0.84 6.97 -2.39 -0.02 0.83 16 33 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.39 3.30 9.12 -74.06 -0.68 2.63 16 35 H 0.35 7.49 7.91 -89.70 -0.71 6.78 16 36 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.06 1.58 7.77 -2.39 -0.02 1.56 16 38 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 39 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 41 H 0.11 1.67 6.15 -2.39 -0.01 1.66 16 42 H 0.09 1.19 8.08 -2.39 -0.02 1.17 16 43 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.09 1.49 7.78 -2.39 -0.02 1.47 16 Total: -1.00 -65.52 364.93 2.79 -62.73 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -0.41 Total: 16.03 kcal Atomic # 6 Polarization: -22.33 SS G_CDS: 4.61 Total: -17.72 kcal Atomic # 7 Polarization: -92.55 SS G_CDS: -1.60 Total: -94.15 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: -1.83 Total: -12.33 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -65.52 2.79 -62.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566230813.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.045 kcal (2) G-P(sol) polarization free energy of solvation -65.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds