Wall clock time and date at job start Tue Mar 31 2020 02:47:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52996 * 109.47240 * 2 1 4 4 H 1.08996 * 115.56123 * 29.31117 * 3 2 1 5 5 C 1.53007 * 117.50150 * 243.62490 * 3 2 1 6 6 C 1.52997 * 60.00086 * 252.50842 * 5 3 2 7 7 H 1.08999 * 117.49962 * 107.48953 * 6 5 3 8 8 C 1.53003 * 117.51806 * 252.51845 * 6 5 3 9 9 N 1.46501 * 109.46945 * 243.71593 * 8 6 5 10 10 C 1.34777 * 119.99810 * 180.02562 * 9 8 6 11 11 O 1.21589 * 120.00117 * 355.01282 * 10 9 8 12 12 N 1.34771 * 119.99946 * 175.01615 * 10 9 8 13 13 C 1.46930 * 120.63297 * 184.94444 * 12 10 9 14 14 C 1.52760 * 109.01130 * 233.58547 * 13 12 10 15 15 C 1.53045 * 109.38321 * 305.58799 * 14 13 12 16 16 C 1.50699 * 109.44876 * 181.25189 * 15 14 13 17 17 H 1.07994 * 120.00104 * 239.93419 * 16 15 14 18 18 C 1.37871 * 119.99951 * 59.94055 * 16 15 14 19 19 N 1.31515 * 120.00053 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00147 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47297 * 59.99446 * 20 18 16 22 22 H 1.48497 * 109.47322 * 180.02562 * 20 18 16 23 23 H 1.48510 * 109.46873 * 299.99687 * 20 18 16 24 24 C 1.53039 * 109.53839 * 61.23883 * 15 14 13 25 25 C 1.46928 * 120.63221 * 5.22482 * 12 10 9 26 26 H 1.09003 * 109.46968 * 299.99688 * 1 2 3 27 27 H 1.09001 * 109.47748 * 59.99988 * 1 2 3 28 28 H 1.09002 * 109.47375 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46968 * 240.00312 * 2 1 3 30 30 H 1.09001 * 109.47748 * 120.00012 * 2 1 3 31 31 H 1.08997 * 117.49933 * 145.01939 * 5 3 2 32 32 H 1.09002 * 117.49493 * 0.02562 * 5 3 2 33 33 H 1.08996 * 109.46697 * 3.71316 * 8 6 5 34 34 H 1.08996 * 109.47046 * 123.71588 * 8 6 5 35 35 H 0.96999 * 120.00252 * 359.97438 * 9 8 6 36 36 H 1.09000 * 109.58179 * 353.41967 * 13 12 10 37 37 H 1.09003 * 109.58676 * 113.84312 * 13 12 10 38 38 H 1.08995 * 109.56742 * 185.55028 * 14 13 12 39 39 H 1.08998 * 109.38369 * 65.50999 * 14 13 12 40 40 H 1.09006 * 109.45718 * 301.22232 * 15 14 13 41 41 H 0.97008 * 120.00167 * 180.02562 * 19 18 16 42 42 H 1.08999 * 109.50160 * 178.68795 * 24 15 14 43 43 H 1.09002 * 109.52796 * 58.60260 * 24 15 14 44 44 H 1.08996 * 109.59101 * 246.15397 * 25 12 10 45 45 H 1.09004 * 109.58573 * 6.43885 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.3884 2.1717 0.4814 5 6 2.8439 1.9076 -1.2159 6 6 3.5501 1.6579 0.1182 7 1 4.1803 0.7720 0.1959 8 6 4.0300 2.8801 0.9036 9 7 5.4912 2.8520 1.0057 10 6 6.1400 3.8357 1.6598 11 8 5.5225 4.7922 2.0866 12 7 7.4733 3.7591 1.8409 13 6 8.1789 4.7671 2.6440 14 6 9.3263 5.3468 1.8188 15 6 10.2163 4.2078 1.3159 16 6 11.3659 4.7801 0.5273 17 1 11.4992 4.5065 -0.5088 18 6 12.2476 5.6528 1.1288 19 7 12.0851 5.9863 2.3905 20 14 13.6723 6.3628 0.1512 21 1 13.1452 7.1272 -1.0077 22 1 14.4675 7.2666 1.0206 23 1 14.5371 5.2583 -0.3363 24 6 9.3973 3.2758 0.4199 25 6 8.2499 2.6695 1.2340 26 1 -0.3633 0.5138 0.8900 27 1 -0.3635 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8932 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 2.7212 2.9428 -1.5344 32 1 3.0091 1.1860 -2.0160 33 1 3.7192 3.7885 0.3876 34 1 3.5956 2.8632 1.9031 35 1 5.9917 2.1251 0.6031 36 1 7.4883 5.5647 2.9180 37 1 8.5791 4.3018 3.5449 38 1 9.9158 6.0230 2.4378 39 1 8.9197 5.8936 0.9680 40 1 10.6030 3.6465 2.1665 41 1 12.7052 6.6007 2.8136 42 1 10.0374 2.4779 0.0433 43 1 8.9897 3.8413 -0.4181 44 1 8.6560 2.0297 2.0174 45 1 7.6056 2.0819 0.5799 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000581650484.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:47:19 Heat of formation + Delta-G solvation = -22.239097 kcal Electronic energy + Delta-G solvation = -21974.124856 eV Core-core repulsion = 18798.637860 eV Total energy + Delta-G solvation = -3175.486996 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 280.189 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.96677 -38.49718 -36.84667 -34.42052 -33.47077 -32.24941 -30.99845 -30.10015 -27.11914 -25.72031 -24.09183 -22.97865 -22.19444 -21.15973 -20.83720 -20.04298 -18.74961 -17.63842 -16.32740 -16.12563 -15.43051 -15.10112 -14.81851 -14.58271 -14.31472 -13.99964 -13.67345 -13.47363 -13.09273 -12.83570 -12.65881 -12.47548 -12.39387 -12.08589 -11.83350 -11.68022 -11.52505 -11.28916 -11.09389 -10.90853 -10.66921 -10.41723 -10.26207 -10.17217 -10.03197 -9.69738 -9.53513 -9.16474 -8.91935 -8.84782 -8.34609 -7.85441 -5.99935 -4.06776 2.98922 3.31106 3.36303 3.38502 3.49044 3.61427 4.18347 4.34819 4.42572 4.55040 4.66243 4.85720 5.00257 5.03514 5.14466 5.29587 5.39411 5.41758 5.51203 5.60438 5.66482 5.70413 5.76642 5.78802 5.81591 5.86700 5.97007 6.06725 6.10029 6.29771 6.45351 6.52891 6.64155 6.71197 6.84649 7.00732 7.18174 7.27522 7.52675 7.73097 7.95590 8.08539 8.35307 8.42361 8.96181 8.99083 9.58077 11.05378 Molecular weight = 280.19amu Principal moments of inertia in cm(-1) A = 0.039583 B = 0.002904 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.207165 B = 9640.275190 C = 9967.217998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.094 4.094 3 C -0.142 4.142 4 H 0.107 0.893 5 C -0.172 4.172 6 C -0.164 4.164 7 H 0.109 0.891 8 C 0.171 3.829 9 N -0.751 5.751 10 C 0.704 3.296 11 O -0.602 6.602 12 N -0.618 5.618 13 C 0.127 3.873 14 C -0.124 4.124 15 C 0.050 3.950 16 C -0.514 4.514 17 H 0.053 0.947 18 C 0.061 3.939 19 N -0.890 5.890 20 Si 0.891 3.109 21 H -0.278 1.278 22 H -0.287 1.287 23 H -0.278 1.278 24 C -0.124 4.124 25 C 0.114 3.886 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.395 0.605 36 H 0.076 0.924 37 H 0.056 0.944 38 H 0.104 0.896 39 H 0.037 0.963 40 H 0.027 0.973 41 H 0.261 0.739 42 H 0.060 0.940 43 H 0.052 0.948 44 H 0.062 0.938 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.695 -11.906 -4.049 21.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.132 4.132 3 C -0.160 4.160 4 H 0.125 0.875 5 C -0.209 4.209 6 C -0.183 4.183 7 H 0.127 0.873 8 C 0.047 3.953 9 N -0.410 5.410 10 C 0.406 3.594 11 O -0.482 6.482 12 N -0.355 5.355 13 C 0.005 3.995 14 C -0.163 4.163 15 C 0.031 3.969 16 C -0.552 4.552 17 H 0.072 0.928 18 C -0.140 4.140 19 N -0.529 5.529 20 Si 0.719 3.281 21 H -0.204 1.204 22 H -0.213 1.213 23 H -0.204 1.204 24 C -0.162 4.162 25 C -0.010 4.010 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.115 0.885 32 H 0.113 0.887 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.231 0.769 36 H 0.094 0.906 37 H 0.074 0.926 38 H 0.122 0.878 39 H 0.056 0.944 40 H 0.045 0.955 41 H 0.071 0.929 42 H 0.078 0.922 43 H 0.071 0.929 44 H 0.080 0.920 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -18.054 -11.088 -3.562 21.485 hybrid contribution 1.147 0.044 -0.805 1.402 sum -16.907 -11.044 -4.367 20.662 Atomic orbital electron populations 1.21746 0.95423 1.01556 1.01992 1.21128 0.96016 0.94013 1.02032 1.22479 0.92782 0.98292 1.02472 0.87491 1.23260 1.03631 1.02637 0.91323 1.22573 0.95514 0.99889 1.00279 0.87321 1.20623 0.79410 0.95847 0.99437 1.45255 1.06998 1.27779 1.60929 1.15860 0.81921 0.82551 0.79082 1.90861 1.66724 1.33326 1.57245 1.47448 1.04473 1.29514 1.54041 1.21674 0.94619 0.90101 0.93139 1.21947 0.94290 1.00807 0.99219 1.18619 0.92142 0.91805 0.94312 1.21145 1.09946 1.26737 0.97381 0.92826 1.24964 0.97722 0.96398 0.94903 1.69837 1.37224 1.34917 1.10901 0.86677 0.82448 0.79001 0.79962 1.20358 1.21311 1.20353 1.22012 0.95614 0.99776 0.98797 1.21704 0.93892 0.88808 0.96562 0.92597 0.92614 0.92757 0.91849 0.91555 0.88527 0.88692 0.91708 0.91647 0.76868 0.90568 0.92600 0.87834 0.94395 0.95488 0.92896 0.92184 0.92921 0.91966 0.92315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.87 37.15 0.37 -0.53 16 2 C -0.09 -0.63 6.22 -26.74 -0.17 -0.79 16 3 C -0.14 -1.10 5.46 -90.62 -0.49 -1.59 16 4 H 0.11 0.84 8.07 -51.93 -0.42 0.42 16 5 C -0.17 -1.38 9.82 -26.73 -0.26 -1.65 16 6 C -0.16 -1.46 5.57 -90.62 -0.50 -1.96 16 7 H 0.11 0.89 8.04 -51.93 -0.42 0.48 16 8 C 0.17 2.06 5.96 -4.04 -0.02 2.04 16 9 N -0.75 -10.53 5.47 -65.23 -0.36 -10.89 16 10 C 0.70 13.11 8.30 -86.92 -0.72 12.39 16 11 O -0.60 -13.33 15.77 5.29 0.08 -13.25 16 12 N -0.62 -11.54 2.98 -178.75 -0.53 -12.07 16 13 C 0.13 2.62 6.41 -3.93 -0.03 2.59 16 14 C -0.12 -2.92 5.14 -26.83 -0.14 -3.06 16 15 C 0.05 1.19 2.07 -91.73 -0.19 1.00 16 16 C -0.51 -13.76 8.56 -34.44 -0.29 -14.06 16 17 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 18 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 19 N -0.89 -24.92 11.30 55.43 0.63 -24.29 16 20 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 C -0.12 -2.41 5.30 -26.61 -0.14 -2.55 16 25 C 0.11 1.84 6.39 -3.71 -0.02 1.82 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.40 7.88 -51.93 -0.41 -0.01 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.10 0.81 8.03 -51.93 -0.42 0.39 16 32 H 0.09 0.68 8.03 -51.93 -0.42 0.27 16 33 H 0.06 0.85 7.88 -51.93 -0.41 0.44 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.39 4.65 5.89 -40.82 -0.24 4.40 16 36 H 0.08 1.62 6.99 -51.93 -0.36 1.26 16 37 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.10 2.71 6.03 -51.93 -0.31 2.40 16 39 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 42 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.06 0.76 5.64 -51.93 -0.29 0.46 16 LS Contribution 354.83 15.07 5.35 5.35 Total: -1.00 -30.37 354.83 -10.46 -40.82 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: -7.89 Total: 3.05 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: -2.71 Total: -4.77 kcal Atomic # 7 Polarization: -46.99 SS G_CDS: -0.26 Total: -47.25 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: 0.08 Total: -13.25 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.37 -10.46 -40.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581650484.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.583 kcal (2) G-P(sol) polarization free energy of solvation -30.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds